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Registro Completo |
Biblioteca(s): |
Embrapa Soja. |
Data corrente: |
18/06/2012 |
Data da última atualização: |
13/07/2017 |
Tipo da produção científica: |
Artigo em Periódico Indexado |
Autoria: |
NASCIMENTO, L. C. do; COSTA, G. G. L.; BINNECK, E.; PEREIRA, G. A. G.; CARAZZOLLE, M. F. |
Afiliação: |
LEANDRO COSTA DO NASCIMENTO, UNICAMP; GUSTAVO GILSON LACERDA COSTA, UNICAMP; ELISEU BINNECK, CNPSO; GONÇALO AMARANTE GUIMARÃES PEREIRA, UNICAMP; MARCELO FALSARELLA CARAZZOLLE, UNICAMP. |
Título: |
A web-based bioinformatics interface applied to the GENOSOJA Project: databases and pipelines. |
Ano de publicação: |
2012 |
Fonte/Imprenta: |
Genetics and Molecular Biology, Ribeirão Preto, v. 35, n. 1, suppl., p. 203-211, May 2012. |
Idioma: |
Inglês |
Conteúdo: |
The Genosoja consortium is an initiative to integrate different omics research approaches carried out in Brazil. Basically, the aim of the project is to improve the plant by identifying genes involved in responses against stresses that affect domestic production, like drought stress and Asian Rust fungal disease. To do so, the project generated several types of sequence data using different methodologies, most of them sequenced by next generation sequencers. The initial stage of the project is highly dependent on bioinformatics analysis, providing suitable tools and integrated databases. In this work, we describe the main features of the Genosoja web database, including the pipelines to analyze some kinds of data (ESTs, SuperSAGE, microRNAs, subtractive cDNA libraries), as well as web interfaces to access information about soybean gene annotation and expression. |
Palavras-Chave: |
Bioinformática; Expressão genética. |
Thesagro: |
Gene; Soja. |
Thesaurus Nal: |
Bioinformatics; Gene expression; Genes; Soybeans. |
Categoria do assunto: |
S Ciências Biológicas |
URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/item/61065/1/gmb.web-based.v35n1s.203-211.2012.pdf
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Marc: |
LEADER 01639naa a2200265 a 4500 001 1926586 005 2017-07-13 008 2012 bl uuuu u00u1 u #d 100 1 $aNASCIMENTO, L. C. do 245 $aA web-based bioinformatics interface applied to the GENOSOJA Project$bdatabases and pipelines. 260 $c2012 520 $aThe Genosoja consortium is an initiative to integrate different omics research approaches carried out in Brazil. Basically, the aim of the project is to improve the plant by identifying genes involved in responses against stresses that affect domestic production, like drought stress and Asian Rust fungal disease. To do so, the project generated several types of sequence data using different methodologies, most of them sequenced by next generation sequencers. The initial stage of the project is highly dependent on bioinformatics analysis, providing suitable tools and integrated databases. In this work, we describe the main features of the Genosoja web database, including the pipelines to analyze some kinds of data (ESTs, SuperSAGE, microRNAs, subtractive cDNA libraries), as well as web interfaces to access information about soybean gene annotation and expression. 650 $aBioinformatics 650 $aGene expression 650 $aGenes 650 $aSoybeans 650 $aGene 650 $aSoja 653 $aBioinformática 653 $aExpressão genética 700 1 $aCOSTA, G. G. L. 700 1 $aBINNECK, E. 700 1 $aPEREIRA, G. A. G. 700 1 $aCARAZZOLLE, M. F. 773 $tGenetics and Molecular Biology, Ribeirão Preto$gv. 35, n. 1, suppl., p. 203-211, May 2012.
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Embrapa Soja (CNPSO) |
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1. | | NASCIMENTO, L. C. do; COSTA, G. G. L.; BINNECK, E.; PEREIRA, G. A. G.; CARAZZOLLE, M. F. A web-based bioinformatics interface applied to the GENOSOJA Project: databases and pipelines. Genetics and Molecular Biology, Ribeirão Preto, v. 35, n. 1, suppl., p. 203-211, May 2012.Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 2 |
Biblioteca(s): Embrapa Soja. |
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