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 | Acesso ao texto completo restrito à biblioteca da Embrapa Gado de Leite. Para informações adicionais entre em contato com cnpgl.biblioteca@embrapa.br. |
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Registro Completo |
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Biblioteca(s): |
Embrapa Gado de Leite; Embrapa Pecuária Sudeste. |
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Data corrente: |
17/12/2013 |
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Data da última atualização: |
15/06/2023 |
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Tipo da produção científica: |
Artigo em Periódico Indexado |
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Autoria: |
McCLURE, M. C.; SONSTEGARD, T. S.; WIGGANS, G. R.; EENENNAAM, A. L. V.; WEBER, K. L.; PENEDO, C. T.; BERRY, D. P.; FLYNN, J.; GARCIA, J. F.; CARMO, A. S.; REGITANO, L. C. de A.; ALBUQUERQUE, M.; SILVA, M. V. G. B.; MACHADO, M. A.; COFFEY, M.; MOORE, K.; BOSCHER, M. Y.; GENESTOUT, L.; MAZZA, R.; TAYLOR, J. F.; SCHNABEL, R. D.; SIMPSON, B.; MARQUES, E.; McEWAN, J. C.; CROMIE, A.; COUTINHO, L. L.; KUEHN, L. A.; KEELE, J. W.; PIPER, E. K.; COOK, J.; WILLIAMS, R.; TASSELL, C. P. V. |
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Afiliação: |
MATTHEW C. McCLURE, USDA; TAD S. SONSTEGARD, USDA; GEORGE R. WIGGANS, USDA; ALISON L. VAN EENENNAAM, University of California - Davis; KRISTINA L. WEBER, University of California-Davis; CECILIA T. PENEDO, University of California-Davis; DONAGH P. BERRY, Animal and Grassland Research and Innovation Centre, Ireland; JOHN FLYNN, Weatherbys DNA Laboratory, Ireland; JOSÉ F. GARCIA, UNESP; ADRIANA S. CARMO, Deoxi Biotecnologia, Araçatuba; LUCIANA CORREIA DE ALMEIDA REGITANO, CPPSE; MILLA ALBUQUERQUE, USP; MARCOS VINICIUS GUALBERTO B SILVA, CNPGL; MARCO ANTONIO MACHADO, CNPGL; MIKE COFFEY, SRUC, Scotland; KIRSTY MOORE, SRUC, Scotland; MARIE-YVONNE BOSCHER, LABOGENA, France; LUCIE GENESTOUT, LABOGENA, France; RAFFAELE MAZZA, Italian Breeders Association, Roma; JEREMY F. TAYLOR, University of Missouri-Columbia; ROBERT D. SCHNABEL, University of Missouri-Columbia; BARRY SIMPSON, GeneSeek, Neogen Company, Lincoln, USA; ELISA MARQUES, GeneSeek, Neogen Company, Lincoln, USA; JOHN C. McEWAN, AgResearch, Invermay Agricultural Centre, New Zealand; ANDREW CROMIE, Irish Cattle Breeding Federation, Ireland; LUIZ L. COUTINHO, ESALQ/USP; LARRY A. KUEHN, USDA-ARS; JOHN W. KEELE, USDA-ARS; EMILY K. PIPER, University of Queensland, Australia; JIM COOK, University of New England, Australia; ROBERT WILLIAMS, American-International Charolais Association, USA; CURTIS P. VAN TASSELL, USDA. |
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Título: |
Imputation of microsatellite alleles from dense SNP genotypes for parentage verification across multiple Bos taurus and Bos indicus breeds. |
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Ano de publicação: |
2013 |
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Fonte/Imprenta: |
Frontiers in Genetics, v. 4, n. 176, 2013. |
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Páginas: |
11 p. |
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Idioma: |
Inglês |
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Conteúdo: |
To assist cattle producers transition from microsatellite (MS) to single nucleotide polymorphism (SNP) genotyping for parental verification we previously devised an effective and inexpensive method to impute MS alleles from SNP haplotypes. While the reported method was verified with only a limited data set (N = 479) from Brown Swiss, Guernsey, Holstein, and Jersey cattle, some of the MS-SNP haplotype associations were concordant across these phylogenetically diverse breeds. This implied that some haplotypes predate modern breed formation and remain in strong linkage disequilibrium. To expand the utility of MS allele imputation across breeds, MS and SNP data from more than 8000 animals representing 39 breeds (Bos taurus and B. indicus) were used to predict 9410 SNP haplotypes, incorporating an average of 73 SNPs per haplotype, for which alleles from 12 MS markers could be accurately be imputed. Approximately 25% of the MS-SNP haplotypes were present in multiple breeds (N = 2 to 36 breeds). These shared haplotypes allowed for MS imputation in breeds that were not represented in the reference population with only a small increase in Mendelian inheritance inconsistancies. Our reported reference haplotypes can be used for any cattle breed and the reported methods can be applied to any species to aid the transition from MS to SNP genetic markers. While ~91% of the animals with imputed alleles for 12 MS markers had ≤1 Mendelian inheritance conflicts with their parents' reported MS genotypes, this figure was 96% for our reference animals, indicating potential errors in the reported MS genotypes. The workflow we suggest autocorrects for genotyping errors and rare haplotypes, by MS genotyping animals whose imputed MS alleles fail parentage verification, and then incorporating those animals into the reference dataset. MenosTo assist cattle producers transition from microsatellite (MS) to single nucleotide polymorphism (SNP) genotyping for parental verification we previously devised an effective and inexpensive method to impute MS alleles from SNP haplotypes. While the reported method was verified with only a limited data set (N = 479) from Brown Swiss, Guernsey, Holstein, and Jersey cattle, some of the MS-SNP haplotype associations were concordant across these phylogenetically diverse breeds. This implied that some haplotypes predate modern breed formation and remain in strong linkage disequilibrium. To expand the utility of MS allele imputation across breeds, MS and SNP data from more than 8000 animals representing 39 breeds (Bos taurus and B. indicus) were used to predict 9410 SNP haplotypes, incorporating an average of 73 SNPs per haplotype, for which alleles from 12 MS markers could be accurately be imputed. Approximately 25% of the MS-SNP haplotypes were present in multiple breeds (N = 2 to 36 breeds). These shared haplotypes allowed for MS imputation in breeds that were not represented in the reference population with only a small increase in Mendelian inheritance inconsistancies. Our reported reference haplotypes can be used for any cattle breed and the reported methods can be applied to any species to aid the transition from MS to SNP genetic markers. While ~91% of the animals with imputed alleles for 12 MS markers had ≤1 Mendelian inheritance conflicts with their parents' reported MS ... Mostrar Tudo |
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Palavras-Chave: |
Imputation; Microsatellite; Parentage verification; SNP; STR. |
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Categoria do assunto: |
G Melhoramento Genético |
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Marc: |
LEADER 03360naa a2200565 a 4500
001 2154448
005 2023-06-15
008 2013 bl uuuu u00u1 u #d
100 1 $aMcCLURE, M. C.
245 $aImputation of microsatellite alleles from dense SNP genotypes for parentage verification across multiple Bos taurus and Bos indicus breeds.$h[electronic resource]
260 $c2013
300 $a11 p.
520 $aTo assist cattle producers transition from microsatellite (MS) to single nucleotide polymorphism (SNP) genotyping for parental verification we previously devised an effective and inexpensive method to impute MS alleles from SNP haplotypes. While the reported method was verified with only a limited data set (N = 479) from Brown Swiss, Guernsey, Holstein, and Jersey cattle, some of the MS-SNP haplotype associations were concordant across these phylogenetically diverse breeds. This implied that some haplotypes predate modern breed formation and remain in strong linkage disequilibrium. To expand the utility of MS allele imputation across breeds, MS and SNP data from more than 8000 animals representing 39 breeds (Bos taurus and B. indicus) were used to predict 9410 SNP haplotypes, incorporating an average of 73 SNPs per haplotype, for which alleles from 12 MS markers could be accurately be imputed. Approximately 25% of the MS-SNP haplotypes were present in multiple breeds (N = 2 to 36 breeds). These shared haplotypes allowed for MS imputation in breeds that were not represented in the reference population with only a small increase in Mendelian inheritance inconsistancies. Our reported reference haplotypes can be used for any cattle breed and the reported methods can be applied to any species to aid the transition from MS to SNP genetic markers. While ~91% of the animals with imputed alleles for 12 MS markers had ≤1 Mendelian inheritance conflicts with their parents' reported MS genotypes, this figure was 96% for our reference animals, indicating potential errors in the reported MS genotypes. The workflow we suggest autocorrects for genotyping errors and rare haplotypes, by MS genotyping animals whose imputed MS alleles fail parentage verification, and then incorporating those animals into the reference dataset.
653 $aImputation
653 $aMicrosatellite
653 $aParentage verification
653 $aSNP
653 $aSTR
700 1 $aSONSTEGARD, T. S.
700 1 $aWIGGANS, G. R.
700 1 $aEENENNAAM, A. L. V.
700 1 $aWEBER, K. L.
700 1 $aPENEDO, C. T.
700 1 $aBERRY, D. P.
700 1 $aFLYNN, J.
700 1 $aGARCIA, J. F.
700 1 $aCARMO, A. S.
700 1 $aREGITANO, L. C. de A.
700 1 $aALBUQUERQUE, M.
700 1 $aSILVA, M. V. G. B.
700 1 $aMACHADO, M. A.
700 1 $aCOFFEY, M.
700 1 $aMOORE, K.
700 1 $aBOSCHER, M. Y.
700 1 $aGENESTOUT, L.
700 1 $aMAZZA, R.
700 1 $aTAYLOR, J. F.
700 1 $aSCHNABEL, R. D.
700 1 $aSIMPSON, B.
700 1 $aMARQUES, E.
700 1 $aMcEWAN, J. C.
700 1 $aCROMIE, A.
700 1 $aCOUTINHO, L. L.
700 1 $aKUEHN, L. A.
700 1 $aKEELE, J. W.
700 1 $aPIPER, E. K.
700 1 $aCOOK, J.
700 1 $aWILLIAMS, R.
700 1 $aTASSELL, C. P. V.
773 $tFrontiers in Genetics$gv. 4, n. 176, 2013.
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Registro original: |
Embrapa Pecuária Sudeste (CPPSE) |
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Biblioteca |
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Origem |
Tipo/Formato |
Classificação |
Cutter |
Registro |
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Registro Completo
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Biblioteca(s): |
Embrapa Semiárido. |
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Data corrente: |
16/10/2020 |
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Data da última atualização: |
16/10/2020 |
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Tipo da produção científica: |
Artigo em Periódico Indexado |
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Circulação/Nível: |
B - 1 |
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Autoria: |
FERREIRA, T. de O.; LIMA, A. de S.; BIASOTO, A. C. T.; RYBKA, A. C. P.; LIMA, M. A. C. de. |
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Afiliação: |
Talita de Oliveira Ferreira; Arlete de Sousa Lima; ALINE TELLES BIASOTO MARQUES, CPATSA; ANA CECILIA POLONI RYBKA, CPATSA; MARIA AUXILIADORA COELHO DE LIMA, CPATSA. |
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Título: |
Rootstock for the BRS Magna grapevine grown in a tropical region affects the quality of the stored juice. |
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Ano de publicação: |
2020 |
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Fonte/Imprenta: |
Revista Ciência Agronômica, v. 51, n. 3, e20186562, 2020. |
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DOI: |
10.5935/1806-6690.20200052 |
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Idioma: |
Inglês |
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Conteúdo: |
The ‘BRS Magna’ grapevine has the advantage of adapting to different regions of Brazil and producing juice of good quality. However, it is necessary to define the components of the cropping system, such as the rootstock, for each region. The aim of this study was to characterise the chemical composition and antioxidant capacity of grape juice collected from ‘BRS Magna’ grapevines grown on different rootstock under the tropical conditions of the Sub-middle São Francisco Valley. The grapes were harvested in the Experimental Area of Bebedouro/Embrapa Semiárido, in Petrolina, Pernambuco, Brazil. The treatments corresponded to the ‘IAC 766’, ‘IAC 572’, ‘IAC 313’, ‘Freedom’, ‘Paulsen 1103’, ‘Harmony’ and ‘SO4’ rootstock. The grape juice was prepared from two harvests for evaluation after storage. For each harvest, a randomised block design was used, with four replications. The quality of the juice varied with the treatment in each storage period. At nine months, the juice from the first harvest showed a loss of pigment and phenolic compounds, while the juice made with grapes from plants grafted onto ‘Harmony’ stood out for soluble solids content (SS), colour intensity (CI), anthocyanins, total polyphenol index (TPI) and antioxidant capacity. Juice from the second harvest was characterised at four months by higher levels of various compounds, especially the ‘SO4’ treatment for SS, CI, total extractable polyphenols, TPI and antioxidant capacity. Considering storage potential and the preparation process, the less-vigorous rootstock resulted in better quality juice. MenosThe ‘BRS Magna’ grapevine has the advantage of adapting to different regions of Brazil and producing juice of good quality. However, it is necessary to define the components of the cropping system, such as the rootstock, for each region. The aim of this study was to characterise the chemical composition and antioxidant capacity of grape juice collected from ‘BRS Magna’ grapevines grown on different rootstock under the tropical conditions of the Sub-middle São Francisco Valley. The grapes were harvested in the Experimental Area of Bebedouro/Embrapa Semiárido, in Petrolina, Pernambuco, Brazil. The treatments corresponded to the ‘IAC 766’, ‘IAC 572’, ‘IAC 313’, ‘Freedom’, ‘Paulsen 1103’, ‘Harmony’ and ‘SO4’ rootstock. The grape juice was prepared from two harvests for evaluation after storage. For each harvest, a randomised block design was used, with four replications. The quality of the juice varied with the treatment in each storage period. At nine months, the juice from the first harvest showed a loss of pigment and phenolic compounds, while the juice made with grapes from plants grafted onto ‘Harmony’ stood out for soluble solids content (SS), colour intensity (CI), anthocyanins, total polyphenol index (TPI) and antioxidant capacity. Juice from the second harvest was characterised at four months by higher levels of various compounds, especially the ‘SO4’ treatment for SS, CI, total extractable polyphenols, TPI and antioxidant capacity. Considering storage potential and the... Mostrar Tudo |
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Palavras-Chave: |
Potencial antioxidante; Sistemas de cultivo; Suco de uva; Uvas híbridas; Variedade BRS Magna; Vitivinicultura tropical. |
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Thesagro: |
Porta Enxerto; Uva. |
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Thesaurus NAL: |
Cropping systems; Grapes; Vitis. |
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Categoria do assunto: |
F Plantas e Produtos de Origem Vegetal |
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URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/item/216725/1/Rootstock-for-the-BRS-Magna-grapevine-grown-in-a-tropical-region-2020.pdf
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Marc: |
LEADER 02562naa a2200313 a 4500
001 2125575
005 2020-10-16
008 2020 bl uuuu u00u1 u #d
024 7 $a10.5935/1806-6690.20200052$2DOI
100 1 $aFERREIRA, T. de O.
245 $aRootstock for the BRS Magna grapevine grown in a tropical region affects the quality of the stored juice.$h[electronic resource]
260 $c2020
520 $aThe ‘BRS Magna’ grapevine has the advantage of adapting to different regions of Brazil and producing juice of good quality. However, it is necessary to define the components of the cropping system, such as the rootstock, for each region. The aim of this study was to characterise the chemical composition and antioxidant capacity of grape juice collected from ‘BRS Magna’ grapevines grown on different rootstock under the tropical conditions of the Sub-middle São Francisco Valley. The grapes were harvested in the Experimental Area of Bebedouro/Embrapa Semiárido, in Petrolina, Pernambuco, Brazil. The treatments corresponded to the ‘IAC 766’, ‘IAC 572’, ‘IAC 313’, ‘Freedom’, ‘Paulsen 1103’, ‘Harmony’ and ‘SO4’ rootstock. The grape juice was prepared from two harvests for evaluation after storage. For each harvest, a randomised block design was used, with four replications. The quality of the juice varied with the treatment in each storage period. At nine months, the juice from the first harvest showed a loss of pigment and phenolic compounds, while the juice made with grapes from plants grafted onto ‘Harmony’ stood out for soluble solids content (SS), colour intensity (CI), anthocyanins, total polyphenol index (TPI) and antioxidant capacity. Juice from the second harvest was characterised at four months by higher levels of various compounds, especially the ‘SO4’ treatment for SS, CI, total extractable polyphenols, TPI and antioxidant capacity. Considering storage potential and the preparation process, the less-vigorous rootstock resulted in better quality juice.
650 $aCropping systems
650 $aGrapes
650 $aVitis
650 $aPorta Enxerto
650 $aUva
653 $aPotencial antioxidante
653 $aSistemas de cultivo
653 $aSuco de uva
653 $aUvas híbridas
653 $aVariedade BRS Magna
653 $aVitivinicultura tropical
700 1 $aLIMA, A. de S.
700 1 $aBIASOTO, A. C. T.
700 1 $aRYBKA, A. C. P.
700 1 $aLIMA, M. A. C. de
773 $tRevista Ciência Agronômica$gv. 51, n. 3, e20186562, 2020.
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