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Registro Completo |
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Biblioteca(s): |
Embrapa Pecuária Sudeste. |
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Data corrente: |
06/04/2020 |
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Data da última atualização: |
20/04/2020 |
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Tipo da produção científica: |
Artigo em Periódico Indexado |
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Autoria: |
OLIVEIRA, F. A. de; VIGNA, B. B. Z.; SILVA, C. C. da; FAVERO, A. P.; MATTA, F. de P.; AZEVEDO, A. L. S.; SOUZA, A. P. de. |
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Afiliação: |
Fernanda A. de Oliveira, UNICAMP; BIANCA BACCILI ZANOTTO VIGNA, CPPSE; Carla C. da Silva, UNICAMP; ALESSANDRA PEREIRA FAVERO, CPPSE; FREDERICO DE PINA MATTA, CPPSE; ANA LUISA SOUSA AZEVEDO, CNPGL; Anete P. de Souza, UNICAMP. |
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Título: |
Coexpression and transcriptome analyses identify active apomixis-related genes in Paspalum notatum leaves. |
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Ano de publicação: |
2020 |
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Fonte/Imprenta: |
BMC Genomics, v. 21, n. 78, 2020. |
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Páginas: |
15 p. |
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DOI: |
https://doi.org/10.1186/s12864-020-6518-z |
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Idioma: |
Inglês |
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Conteúdo: |
RNA sequencing (RNA-seq) is the most effective method for simultaneously predicting new transcripts and identifying differentially expressed genes among distinct tissues, genotypes, abiotic conditions and developmental stages [1]. Conversely, considering the large amount of data generated from RNA-seq, new approaches that efficiently extract meaningful associations from highly multivariate datasets are needed [2]. Transcriptome coexpression studies can show how complex phenotypes depend on the activity of coordinated batteries of genes [3]. Therefore, the construction of coexpression networks based on gene expression data using correlation metrics provides valuable information
regarding alterations in biological systems in response to differential gene expression patterns [2, 4]. |
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Palavras-Chave: |
Differential expression; Gene coexpression network; RNA sequencing. |
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Thesaurus Nal: |
Apomixis; Paspalum. |
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Categoria do assunto: |
X Pesquisa, Tecnologia e Engenharia |
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URL: |
http://ainfo.cnptia.embrapa.br/digital/bitstream/item/212171/1/CoexpressionTranscriptomeAnalyses.pdf
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Marc: |
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024 7 $ahttps://doi.org/10.1186/s12864-020-6518-z$2DOI
100 1 $aOLIVEIRA, F. A. de
245 $aCoexpression and transcriptome analyses identify active apomixis-related genes in Paspalum notatum leaves.$h[electronic resource]
260 $c2020
300 $a15 p.
520 $aRNA sequencing (RNA-seq) is the most effective method for simultaneously predicting new transcripts and identifying differentially expressed genes among distinct tissues, genotypes, abiotic conditions and developmental stages [1]. Conversely, considering the large amount of data generated from RNA-seq, new approaches that efficiently extract meaningful associations from highly multivariate datasets are needed [2]. Transcriptome coexpression studies can show how complex phenotypes depend on the activity of coordinated batteries of genes [3]. Therefore, the construction of coexpression networks based on gene expression data using correlation metrics provides valuable information regarding alterations in biological systems in response to differential gene expression patterns [2, 4].
650 $aApomixis
650 $aPaspalum
653 $aDifferential expression
653 $aGene coexpression network
653 $aRNA sequencing
700 1 $aVIGNA, B. B. Z.
700 1 $aSILVA, C. C. da
700 1 $aFAVERO, A. P.
700 1 $aMATTA, F. de P.
700 1 $aAZEVEDO, A. L. S.
700 1 $aSOUZA, A. P. de
773 $tBMC Genomics$gv. 21, n. 78, 2020.
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Registro original: |
Embrapa Pecuária Sudeste (CPPSE) |
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| 1. |  | OLIVEIRA, F. A. de; VIGNA, B. B. Z.; SILVA, C. C. da; FAVERO, A. P.; MATTA, F. de P.; AZEVEDO, A. L. S.; SOUZA, A. P. de. Coexpression and transcriptome analyses identify active apomixis-related genes in Paspalum notatum leaves. BMC Genomics, v. 21, n. 78, 2020. 15 p.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
| Biblioteca(s): Embrapa Pecuária Sudeste. |
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