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Registro Completo |
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Biblioteca(s): |
Embrapa Agrobiologia. |
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Data corrente: |
13/11/2017 |
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Data da última atualização: |
08/05/2018 |
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Tipo da produção científica: |
Artigo em Periódico Indexado |
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Autoria: |
SILVA, P. R. A.; ARAUJO, J. L. S. de; VIDAL, M. S.; CRUZ, L. M.; SOUZA, E. M. de; BALDANI, J. I. |
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Afiliação: |
PAULA RENATA ALVES DA SILVA, UFRRJ; JEAN LUIZ SIMOES DE ARAUJO, CNPAB; MARCIA SOARES VIDAL, CNPAB; LEONARDO MAGALHÃES CRUZ, UFPR; EMANUEL MALTEMPI DE SOUZA, UFPR; JOSE IVO BALDANI, CNPAB. |
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Título: |
Draft genome sequence of Paraburkholderia tropica Ppe8 strain, a sugarcane endophytic diazotrophic bacterium. |
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Ano de publicação: |
2018 |
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Fonte/Imprenta: |
Brazilian Journal of Microbiology, v. 49, n. 2, p. 2010-2011, Apr./Jun. 2018. |
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DOI: |
https://doi.org/10.1016/j.bjm.2017.07.005 |
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Idioma: |
Inglês |
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Conteúdo: |
Paraburkholderia tropica (syn Burkholderia tropica) are nitrogen-fixing bacteria commonly found in sugarcane. The Paraburkholderia tropica strain Ppe8 is part of the sugarcane inoculant consortium that has a beneficial effect on yield. Here, we report a draft genome sequence of this strain elucidating the mechanisms involved in its interaction mainly with Poaceae. A genome size of approximately 8.75 Mb containing 7844 protein coding genes distributed in 526 subsystems was de novo assembled with ABySS and annotated by RAST. Genes related to the nitrogen fixation process, the secretion systems (I, II, III, IV, and VI), and related to a variety of metabolic traits, such as metabolism of carbohydrates, amino acids, vitamins, and proteins, were detected, suggesting a broad metabolic capacity and possible adaptation to plant association. |
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Palavras-Chave: |
Diazotrophic; Next generation sequencing; Nitrogen fixing; Secretion system. |
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Categoria do assunto: |
S Ciências Biológicas |
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URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/item/176513/1/JEAN-IVO-MARCIA-Draft-genome.pdf
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Marc: |
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001 2079611
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008 2018 bl uuuu u00u1 u #d
024 7 $ahttps://doi.org/10.1016/j.bjm.2017.07.005$2DOI
100 1 $aSILVA, P. R. A.
245 $aDraft genome sequence of Paraburkholderia tropica Ppe8 strain, a sugarcane endophytic diazotrophic bacterium.$h[electronic resource]
260 $c2018
520 $aParaburkholderia tropica (syn Burkholderia tropica) are nitrogen-fixing bacteria commonly found in sugarcane. The Paraburkholderia tropica strain Ppe8 is part of the sugarcane inoculant consortium that has a beneficial effect on yield. Here, we report a draft genome sequence of this strain elucidating the mechanisms involved in its interaction mainly with Poaceae. A genome size of approximately 8.75 Mb containing 7844 protein coding genes distributed in 526 subsystems was de novo assembled with ABySS and annotated by RAST. Genes related to the nitrogen fixation process, the secretion systems (I, II, III, IV, and VI), and related to a variety of metabolic traits, such as metabolism of carbohydrates, amino acids, vitamins, and proteins, were detected, suggesting a broad metabolic capacity and possible adaptation to plant association.
653 $aDiazotrophic
653 $aNext generation sequencing
653 $aNitrogen fixing
653 $aSecretion system
700 1 $aARAUJO, J. L. S. de
700 1 $aVIDAL, M. S.
700 1 $aCRUZ, L. M.
700 1 $aSOUZA, E. M. de
700 1 $aBALDANI, J. I.
773 $tBrazilian Journal of Microbiology$gv. 49, n. 2, p. 2010-2011, Apr./Jun. 2018.
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Embrapa Agrobiologia (CNPAB) |
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| 1. |  | SILVA, P. R. A.; ARAUJO, J. L. S. de; VIDAL, M. S.; CRUZ, L. M.; SOUZA, E. M. de; BALDANI, J. I. Draft genome sequence of Paraburkholderia tropica Ppe8 strain, a sugarcane endophytic diazotrophic bacterium. Brazilian Journal of Microbiology, v. 49, n. 2, p. 2010-2011, Apr./Jun. 2018.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
| Biblioteca(s): Embrapa Agrobiologia. |
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