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Registro Completo |
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Biblioteca(s): |
Embrapa Agricultura Digital. |
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Data corrente: |
24/12/2014 |
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Data da última atualização: |
22/01/2020 |
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Tipo da produção científica: |
Artigo em Anais de Congresso |
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Autoria: |
URBITANI, I.; BUZANSKAS, M. E.; CHUD, T. C. S.; MORKRY, F. B; REGITANO, L. C. A.; HIGA, R. H.; MUNARI, D. P. |
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Afiliação: |
ISMAEL URBINATI, FCAV/Unesp; MARCOS ELI BUZANSKAS, FCAV/Unesp; FCAV/Unesp; FABIANA BARICHELLO MORKRY, UFSCar; LUCIANA CORREIA DE ALMEIDA REGITANO, CPPSE; ROBERTO HIROSHI HIGA, CNPTIA; DANÍSIO PRADO MUNARI, FCAV/Unesp. |
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Título: |
Selection signatures in Canchim beef cattle. |
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Ano de publicação: |
2014 |
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Fonte/Imprenta: |
In: WORLD CONGRESS OF GENETICS APPLIED TO LIVESTOCK PRODUCTION, 10., 2014, Vancouver. Proceedings... Champaign: ASAS, 2014. |
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Páginas: |
Não paginado. |
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Idioma: |
Inglês |
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Conteúdo: |
Selection signature (SS) was assessed in this study by means of the integrated haplotype score (iHS) method, which determines the decay of homozygosity in the surroundings of a core single nucleotide polymorphism (SNP) marker. Canchim breed animals were genotyped using the Illumina BovineHD BeadChip; which has almost 800 thousand SNP markers. Genotype quality control (QC) was applied to exclude SNP with genotype calling score lower than 0.20; SNP with minor allele frequency lower than 0.01; and call rate for SNP and samples which were lower than 0.95 and 0.90, respectively. Only autosomal SNPs with known genome position were used. After the QC, 687,655 SNPs and 396 samples remained for SS analysis. Signals of SS were detected on chromosomes 5, 6, 8, and 14, indicating that these regions are conserved through recent generations. |
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Palavras-Chave: |
Polimorfismo de nucleotídeo único. |
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Thesagro: |
Gado de corte. |
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Thesaurus Nal: |
Beef cattle; Single nucleotide polymorphism. |
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Categoria do assunto: |
-- |
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URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/item/114439/1/Selection-Urbinati.pdf
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Marc: |
LEADER 01604nam a2200241 a 4500
001 2003696
005 2020-01-22
008 2014 bl uuuu u00u1 u #d
100 1 $aURBITANI, I.
245 $aSelection signatures in Canchim beef cattle.$h[electronic resource]
260 $aIn: WORLD CONGRESS OF GENETICS APPLIED TO LIVESTOCK PRODUCTION, 10., 2014, Vancouver. Proceedings... Champaign: ASAS$c2014
300 $aNão paginado.
520 $aSelection signature (SS) was assessed in this study by means of the integrated haplotype score (iHS) method, which determines the decay of homozygosity in the surroundings of a core single nucleotide polymorphism (SNP) marker. Canchim breed animals were genotyped using the Illumina BovineHD BeadChip; which has almost 800 thousand SNP markers. Genotype quality control (QC) was applied to exclude SNP with genotype calling score lower than 0.20; SNP with minor allele frequency lower than 0.01; and call rate for SNP and samples which were lower than 0.95 and 0.90, respectively. Only autosomal SNPs with known genome position were used. After the QC, 687,655 SNPs and 396 samples remained for SS analysis. Signals of SS were detected on chromosomes 5, 6, 8, and 14, indicating that these regions are conserved through recent generations.
650 $aBeef cattle
650 $aSingle nucleotide polymorphism
650 $aGado de corte
653 $aPolimorfismo de nucleotídeo único
700 1 $aBUZANSKAS, M. E.
700 1 $aCHUD, T. C. S.
700 1 $aMORKRY, F. B
700 1 $aREGITANO, L. C. A.
700 1 $aHIGA, R. H.
700 1 $aMUNARI, D. P.
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Registro original: |
Embrapa Agricultura Digital (CNPTIA) |
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| 1. |  | URBITANI, I.; BUZANSKAS, M. E.; CHUD, T. C. S.; MORKRY, F. B; REGITANO, L. C. A.; HIGA, R. H.; MUNARI, D. P. Selection signatures in Canchim beef cattle. In: WORLD CONGRESS OF GENETICS APPLIED TO LIVESTOCK PRODUCTION, 10., 2014, Vancouver. Proceedings... Champaign: ASAS, 2014. Não paginado.| Tipo: Artigo em Anais de Congresso |
| Biblioteca(s): Embrapa Agricultura Digital. |
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