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Registro Completo |
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Biblioteca(s): |
Embrapa Agricultura Digital; Embrapa Caprinos e Ovinos; Embrapa Meio-Norte; Embrapa Pecuária Sul; Embrapa Recursos Genéticos e Biotecnologia; Embrapa Tabuleiros Costeiros; Embrapa Unidades Centrais. |
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Data corrente: |
08/05/2019 |
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Data da última atualização: |
02/10/2019 |
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Tipo da produção científica: |
Artigo em Periódico Indexado |
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Autoria: |
PAIM, T. do P.; McMANUS, C.; VIEIRA, F. D.; OLIVEIRA, S. R. de M.; FACÓ, O.; AZEVEDO, H. C.; ARAÚJO, A. M. de; MORAES, J. C. F.; YAMAGISHI, M. E. B.; CARNEIRO, P. L. S.; CAETANO, A. R.; PAIVA, S. R. |
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Afiliação: |
TIAGO DO PRADO PAIM, Instituto Federal de Educação, Ciência e Tecnologia Goiano (IFEgoiano); CONCEPTA MCMANUS, Instituto de Biologia/UnB; FABIO DANILO VIEIRA, CNPTIA; STANLEY ROBSON DE MEDEIROS OLIVEIRA, CNPTIA; OLIVARDO FACÓ, CNPC; HYMERSON COSTA AZEVEDO, CPATC; ADRIANA MELLO DE ARAÚJO, CPAMN; JOSE CARLOS FERRUGEM MORAES, CPPSUL; MICHEL EDUARDO BELEZA YAMAGISHI, CNPTIA; PAULO LUIZ SOUZA CARNEIRO, Departamento de Ciências Biológicas/Universidade Estadual do Sudoeste da Bahia; ALEXANDRE RODRIGUES CAETANO, Cenargen; SAMUEL REZENDE PAIVA, Cenargen. |
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Título: |
Validation of a customized subset of SNPs for sheep breed assignment in Brazil. |
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Ano de publicação: |
2019 |
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Fonte/Imprenta: |
Pesquisa Agropecuária Brasileira, Brasília, DF, v. 54, p. 1-5, 2019. |
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DOI: |
10.1590/S1678-3921.pab2019.v54.00506 |
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Idioma: |
Inglês |
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Notas: |
Article number: e00506. Título em português: Validação de um subconjunto de SNPs específicos para certificação racial de ovinos no Brasil. |
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Conteúdo: |
The objective of this work was to evaluate the usefulness of a subset of 18 single nucleotide polymorphisms (SNPs) for breed identification of Brazilian Crioula, Morada Nova (MN), and Santa Inês (SI) sheep. Data of 588 animals were analyzed with the Structure software. Assignments higher than 90% confidence were observed in 82% of the studied samples. Most of the low-value assignments were observed in MN and SI breeds. Therefore, although there is a high reliability in this subset of 18 SNPs, it is not enough for an unequivocal assignment of the studied breeds, mainly of hair breeds. A more precise panel still needs to be developed for the widespread use in breed assignment. |
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Palavras-Chave: |
Certificação de origem; Ertification of origin; Genômica; Polimorfismo de nucleotídeo único; Rastreabilidade; Recurso genéticos animal. |
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Thesagro: |
Ovis Aries. |
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Thesaurus Nal: |
Animal genetic resources; Genomics; Single nucleotide polymorphism; Traceability. |
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Categoria do assunto: |
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G Melhoramento Genético |
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URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/item/197140/1/Validation-of-a-customized-subset-of-SNPs.pdf
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Marc: |
LEADER 02053naa a2200409 a 4500
001 2110747
005 2019-10-02
008 2019 bl uuuu u00u1 u #d
024 7 $a10.1590/S1678-3921.pab2019.v54.00506$2DOI
100 1 $aPAIM, T. do P.
245 $aValidation of a customized subset of SNPs for sheep breed assignment in Brazil.$h[electronic resource]
260 $c2019
500 $aArticle number: e00506. Título em português: Validação de um subconjunto de SNPs específicos para certificação racial de ovinos no Brasil.
520 $aThe objective of this work was to evaluate the usefulness of a subset of 18 single nucleotide polymorphisms (SNPs) for breed identification of Brazilian Crioula, Morada Nova (MN), and Santa Inês (SI) sheep. Data of 588 animals were analyzed with the Structure software. Assignments higher than 90% confidence were observed in 82% of the studied samples. Most of the low-value assignments were observed in MN and SI breeds. Therefore, although there is a high reliability in this subset of 18 SNPs, it is not enough for an unequivocal assignment of the studied breeds, mainly of hair breeds. A more precise panel still needs to be developed for the widespread use in breed assignment.
650 $aAnimal genetic resources
650 $aGenomics
650 $aSingle nucleotide polymorphism
650 $aTraceability
650 $aOvis Aries
653 $aCertificação de origem
653 $aErtification of origin
653 $aGenômica
653 $aPolimorfismo de nucleotídeo único
653 $aRastreabilidade
653 $aRecurso genéticos animal
700 1 $aMcMANUS, C.
700 1 $aVIEIRA, F. D.
700 1 $aOLIVEIRA, S. R. de M.
700 1 $aFACÓ, O.
700 1 $aAZEVEDO, H. C.
700 1 $aARAÚJO, A. M. de
700 1 $aMORAES, J. C. F.
700 1 $aYAMAGISHI, M. E. B.
700 1 $aCARNEIRO, P. L. S.
700 1 $aCAETANO, A. R.
700 1 $aPAIVA, S. R.
773 $tPesquisa Agropecuária Brasileira, Brasília, DF$gv. 54, p. 1-5, 2019.
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Registro original: |
Embrapa Agricultura Digital (CNPTIA) |
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 | Acesso ao texto completo restrito à biblioteca da Embrapa Soja. Para informações adicionais entre em contato com valeria.cardoso@embrapa.br. |
Registro Completo
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Biblioteca(s): |
Embrapa Soja. |
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Data corrente: |
28/09/2016 |
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Data da última atualização: |
28/09/2016 |
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Tipo da produção científica: |
Resumo em Anais de Congresso |
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Autoria: |
BINNECK, E.; SOSA-GOMEZ, D. R. |
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Afiliação: |
ELISEU BINNECK, CNPSO; DANIEL RICARDO SOSA GOMEZ, CNPSO. |
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Título: |
The complete genome of Metarhizium rileyi, a key fungal pathogen of Lepidoptera. |
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Ano de publicação: |
2016 |
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Fonte/Imprenta: |
In: ANNUAL MEETING OF THE SOCIETY FOR INVERTEBRATE PATHOLOGY, 49.; INTERNATIONAL CONGRESS ON INVERTEBRATE PATHOLOGY AND MICROBIAL CONTROL, 2016. Tours. [S.l.]: Society for Invertebrate Pathology, 2016. |
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Páginas: |
p. 110. |
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Idioma: |
Português |
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Notas: |
Poster: FU-23. |
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Conteúdo: |
The fungus Metarhizium rileyi (= Nomuraea rileyi) is a key regulatory agent of lepidopteran populations. In soybean and cotton agroecosystems, it causes major epizootics decimating important lepidopteran pests such as velvetbean caterpillar, soybean loopers, green cloverworm, cotton leafworm and others. Despite its recent phylogenetic transfer to Metarhizium, M. rileyi displays unusually high specificity by infecting only lepidopteran species. The complete genome of M. rileyi was assembled de novo using short-read Illumina data from paired-end and mate- pair libraries. A total of 311 scaffolds were constructed (> 1 kb, N50 = 800 kb), with a total length of 31,007,635 bp. An ab initio annotation, using a set of 2,159 gene stuctures of Metarhizium robertsii ARSEF 23 to train the model, predicted a total of 10,880 genes coding for proteins in this genome. Orthologous genes were detected in M. robertsii and M. acridum: 4,806 orthologs in both species, 349 orthologs only in M. robertsii, and 301 orthologs only in M. acridum. In-paralogs were not counted. Divergent genes (4,534) with no shared orthologs were compared to annotation data for known functions and were categorized according to an enrichment analysis of function-related aspects. A remarkable and more numerous category of genes appears to be polyketide synthases, possibly involved in the secondary metabolism required for virulence to insect hosts. This study provides the genome sequence and annotation of M. rileyi. Comparative studies of its genome among different isolates and species could provide new insights on differential pathogenicity and improved understandings of its relationships to phylogenetically related species. MenosThe fungus Metarhizium rileyi (= Nomuraea rileyi) is a key regulatory agent of lepidopteran populations. In soybean and cotton agroecosystems, it causes major epizootics decimating important lepidopteran pests such as velvetbean caterpillar, soybean loopers, green cloverworm, cotton leafworm and others. Despite its recent phylogenetic transfer to Metarhizium, M. rileyi displays unusually high specificity by infecting only lepidopteran species. The complete genome of M. rileyi was assembled de novo using short-read Illumina data from paired-end and mate- pair libraries. A total of 311 scaffolds were constructed (> 1 kb, N50 = 800 kb), with a total length of 31,007,635 bp. An ab initio annotation, using a set of 2,159 gene stuctures of Metarhizium robertsii ARSEF 23 to train the model, predicted a total of 10,880 genes coding for proteins in this genome. Orthologous genes were detected in M. robertsii and M. acridum: 4,806 orthologs in both species, 349 orthologs only in M. robertsii, and 301 orthologs only in M. acridum. In-paralogs were not counted. Divergent genes (4,534) with no shared orthologs were compared to annotation data for known functions and were categorized according to an enrichment analysis of function-related aspects. A remarkable and more numerous category of genes appears to be polyketide synthases, possibly involved in the secondary metabolism required for virulence to insect hosts. This study provides the genome sequence and annotation of M. rileyi. Compa... Mostrar Tudo |
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Thesagro: |
Entomologia. |
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Categoria do assunto: |
-- |
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Marc: |
LEADER 02352naa a2200169 a 4500
001 2053606
005 2016-09-28
008 2016 bl --- 0-- u #d
100 1 $aBINNECK, E.
245 $aThe complete genome of Metarhizium rileyi, a key fungal pathogen of Lepidoptera.$h[electronic resource]
260 $c2016
300 $ap. 110.
500 $aPoster: FU-23.
520 $aThe fungus Metarhizium rileyi (= Nomuraea rileyi) is a key regulatory agent of lepidopteran populations. In soybean and cotton agroecosystems, it causes major epizootics decimating important lepidopteran pests such as velvetbean caterpillar, soybean loopers, green cloverworm, cotton leafworm and others. Despite its recent phylogenetic transfer to Metarhizium, M. rileyi displays unusually high specificity by infecting only lepidopteran species. The complete genome of M. rileyi was assembled de novo using short-read Illumina data from paired-end and mate- pair libraries. A total of 311 scaffolds were constructed (> 1 kb, N50 = 800 kb), with a total length of 31,007,635 bp. An ab initio annotation, using a set of 2,159 gene stuctures of Metarhizium robertsii ARSEF 23 to train the model, predicted a total of 10,880 genes coding for proteins in this genome. Orthologous genes were detected in M. robertsii and M. acridum: 4,806 orthologs in both species, 349 orthologs only in M. robertsii, and 301 orthologs only in M. acridum. In-paralogs were not counted. Divergent genes (4,534) with no shared orthologs were compared to annotation data for known functions and were categorized according to an enrichment analysis of function-related aspects. A remarkable and more numerous category of genes appears to be polyketide synthases, possibly involved in the secondary metabolism required for virulence to insect hosts. This study provides the genome sequence and annotation of M. rileyi. Comparative studies of its genome among different isolates and species could provide new insights on differential pathogenicity and improved understandings of its relationships to phylogenetically related species.
650 $aEntomologia
700 1 $aSOSA-GOMEZ, D. R.
773 $tIn: ANNUAL MEETING OF THE SOCIETY FOR INVERTEBRATE PATHOLOGY, 49.; INTERNATIONAL CONGRESS ON INVERTEBRATE PATHOLOGY AND MICROBIAL CONTROL, 2016. Tours. [S.l.]: Society for Invertebrate Pathology, 2016.
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