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Registro Completo |
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Biblioteca(s): |
Embrapa Meio Ambiente. |
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Data corrente: |
02/12/2011 |
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Data da última atualização: |
02/12/2011 |
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Tipo da produção científica: |
Artigo em Periódico Indexado |
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Autoria: |
DIAS, A. C. F.; DINI-ANDREOTE, F.; TAKETANI, R. G.; TSAI, S. M.; AZEVEDO, J. L.; MELO, I. S. de; ANDREOTE, F. D. |
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Afiliação: |
ARMANDO CAVALCANTE FRANCO DIAS, CENA-USP; FRANCISCO DINI-ANDREOTE, ESALQ-USP; RODIRGO GOUVÊA TAKETANI, CENA-USP; SIU MUI TSAI, CENA-USP; JOÃO LÚCIO AZEVEDO, CENA-USP; ITAMAR SOARES DE MELO, CNPMA; FERNANDO DINI ANDREOTE, ESALQ-USP. |
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Título: |
Archaeal communities in the sediments of three contrasting mangroves. |
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Ano de publicação: |
2011 |
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Fonte/Imprenta: |
Journal of Soils and Sediments, Berlin, v. 11, n. 8, p. 1466-1476, 2011. |
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Idioma: |
Inglês |
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Conteúdo: |
Abstract: This study evaluates the presence and diversity of 16S rRNA (rrs) and amoA genes from archaea in three mangrove sediments under different stages of preservation(one pristine mangrove, one affected by anthropogenic activity, and another contaminated by an oil spill) in the state of São Paulo (Brazil). Materials and methods A combination of DGGE, coupled with ordination analysis, and clone libraries of both targeted genes (rrs and amoA) was used to infer the diversity and phylogeny of archaeal communities in the mangrove analyzed samples. Results and discussion The DGGE combined with multivariate analysis revealed, based on the ribosomal gene, differences in archaeal communities according to environmental parameters such as mangrove location, anthropogenic activity, and oil contamination. The profiles based on the amoA gene were more similar than those obtained for the gene rrs, with the only difference statistically observed for the community found in the mangrove under anthropogenic pressure. Furthermore, phylogenetic analysis revealed most archaeal groups affiliated to sequences belonging to the Thaumarchaeota (53.1%, 24 OTUs) and Euryarchaeota (29.6%, 14 OTUs) phyla, in addition to 14 sequences affiliated to an unclassified Archaea (16.1%, 8 OTUs). Concerning the analysis of the amoA gene, mangroves harbored sequences affiliated with those previously described in water column and soil/sediment samples, besides two possible clusters specifically found in mangroves. Conclusions The findings are that the mangroves act as a reservoir for archaeal diversity, are possibly involved in nitrogen transformation in this ecosystem, and are affected by distinct pressures caused by anthropogenic activities. MenosAbstract: This study evaluates the presence and diversity of 16S rRNA (rrs) and amoA genes from archaea in three mangrove sediments under different stages of preservation(one pristine mangrove, one affected by anthropogenic activity, and another contaminated by an oil spill) in the state of São Paulo (Brazil). Materials and methods A combination of DGGE, coupled with ordination analysis, and clone libraries of both targeted genes (rrs and amoA) was used to infer the diversity and phylogeny of archaeal communities in the mangrove analyzed samples. Results and discussion The DGGE combined with multivariate analysis revealed, based on the ribosomal gene, differences in archaeal communities according to environmental parameters such as mangrove location, anthropogenic activity, and oil contamination. The profiles based on the amoA gene were more similar than those obtained for the gene rrs, with the only difference statistically observed for the community found in the mangrove under anthropogenic pressure. Furthermore, phylogenetic analysis revealed most archaeal groups affiliated to sequences belonging to the Thaumarchaeota (53.1%, 24 OTUs) and Euryarchaeota (29.6%, 14 OTUs) phyla, in addition to 14 sequences affiliated to an unclassified Archaea (16.1%, 8 OTUs). Concerning the analysis of the amoA gene, mangroves harbored sequences affiliated with those previously described in water column and soil/sediment samples, besides two possible clusters specifically found in mangroves... Mostrar Tudo |
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Palavras-Chave: |
16S rRNA; Ammonium processing; amoA; Thaumarchaeota. |
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Thesagro: |
Mangue; Microrganismo; Sedimento. |
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Thesaurus Nal: |
Archaea; Euryarchaeota; Mangrove swamps. |
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Categoria do assunto: |
S Ciências Biológicas |
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Marc: |
LEADER 02590naa a2200313 a 4500
001 1908298
005 2011-12-02
008 2011 bl uuuu u00u1 u #d
100 1 $aDIAS, A. C. F.
245 $aArchaeal communities in the sediments of three contrasting mangroves.$h[electronic resource]
260 $c2011
520 $aAbstract: This study evaluates the presence and diversity of 16S rRNA (rrs) and amoA genes from archaea in three mangrove sediments under different stages of preservation(one pristine mangrove, one affected by anthropogenic activity, and another contaminated by an oil spill) in the state of São Paulo (Brazil). Materials and methods A combination of DGGE, coupled with ordination analysis, and clone libraries of both targeted genes (rrs and amoA) was used to infer the diversity and phylogeny of archaeal communities in the mangrove analyzed samples. Results and discussion The DGGE combined with multivariate analysis revealed, based on the ribosomal gene, differences in archaeal communities according to environmental parameters such as mangrove location, anthropogenic activity, and oil contamination. The profiles based on the amoA gene were more similar than those obtained for the gene rrs, with the only difference statistically observed for the community found in the mangrove under anthropogenic pressure. Furthermore, phylogenetic analysis revealed most archaeal groups affiliated to sequences belonging to the Thaumarchaeota (53.1%, 24 OTUs) and Euryarchaeota (29.6%, 14 OTUs) phyla, in addition to 14 sequences affiliated to an unclassified Archaea (16.1%, 8 OTUs). Concerning the analysis of the amoA gene, mangroves harbored sequences affiliated with those previously described in water column and soil/sediment samples, besides two possible clusters specifically found in mangroves. Conclusions The findings are that the mangroves act as a reservoir for archaeal diversity, are possibly involved in nitrogen transformation in this ecosystem, and are affected by distinct pressures caused by anthropogenic activities.
650 $aArchaea
650 $aEuryarchaeota
650 $aMangrove swamps
650 $aMangue
650 $aMicrorganismo
650 $aSedimento
653 $a16S rRNA
653 $aAmmonium processing
653 $aamoA
653 $aThaumarchaeota
700 1 $aDINI-ANDREOTE, F.
700 1 $aTAKETANI, R. G.
700 1 $aTSAI, S. M.
700 1 $aAZEVEDO, J. L.
700 1 $aMELO, I. S. de
700 1 $aANDREOTE, F. D.
773 $tJournal of Soils and Sediments, Berlin$gv. 11, n. 8, p. 1466-1476, 2011.
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| 6. |  | LIMA FILHO, O. F. de; TSAI, S. M. Fixação simbiótica de nitrogênio em soja cultivada em perlita e suplementada com silicato de sódio. In: REUNIÃO BRASILEIRA DE FERTILIDADE DO SOLO E NUTRIÇÃO DE PLANTAS, 27.; REUNIÃO BRASILEIRA SOBRE MICORRIZAS, 11.; SIMPÓSIO BRASILEIRO DE MICROBIOLOGIA DO SOLO, 9.; REUNIÃO BRASILEIRA DE BIOLOGIA DO SOLO, 6., 2006, Bonito, MS. A busca das raízes: anais. Dourados: Embrapa Agropecuária Oeste, 2006. (Embrapa Agropecuária Oeste. Documentos, 82). 1 CD-ROM. FERTBIO| Tipo: Artigo em Anais de Congresso / Nota Técnica |
| Biblioteca(s): Embrapa Agropecuária Oeste. |
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| 8. | | VIEIRA, R. F.; TSAI, S. M.; TEIXEIRA, M. A. Nodulação e fixação simbiótica de nitrogênio em feijoeiro com estirpes nativas de rizóbio, em solo tratado com lodo de esgoto. Pesquisa Agropecuária Brasileira, Brasília, DF, v. 40, n. 10, p. 1047-1050, out. 2005. Notas científicas.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: Internacional - A |
| Biblioteca(s): Embrapa Meio Ambiente; Embrapa Unidades Centrais. |
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| 17. | | SANTOS, J. L. S.; PETTER, F. A.; BORGES, C. D.; TSAI, S. M.; MADARI, B. E. Biocarvão na estrutura de comunidades bacterianas de solo e de rizosfera de soja (G. max). In: SEMINÁRIO JOVENS TALENTOS, 5., 2011, Santo Antônio de Goiás. Resumos apresentados. Santo Antônio de Goiás: Embrapa Arroz e Feijão, 2011. p. 22. (Embrapa Arroz e Feijão. Documentos, 270).| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Arroz e Feijão. |
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| Registros recuperados : 98 | |
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