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Registro Completo |
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Biblioteca(s): |
Embrapa Agricultura Digital; Embrapa Pesca e Aquicultura; Embrapa Recursos Genéticos e Biotecnologia. |
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Data corrente: |
09/02/2017 |
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Data da última atualização: |
31/03/2023 |
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Tipo da produção científica: |
Artigo em Periódico Indexado |
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Autoria: |
VILLELA, L. C. V.; ALVES, A. L.; VARELA, E. S.; YAMAGISHI, M. E. B.; GIACHETTO, P. F.; SILVA, N. M. A. da; PONZETTO, J. M.; PAIVA, S. R.; CAETANO, A. R. |
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Afiliação: |
LUCIANA CRISTINE VASQUES VILLELA, CNPASA; ANDERSON LUIS ALVES, CNPASA; EDUARDO SOUSA VARELA, CNPASA; MICHEL EDUARDO BELEZA YAMAGISHI, CNPTIA; POLIANA FERNANDA GIACHETTO, CNPTIA; NAIARA MILAGRES AUGUSTO DA SILVA, Cenargen; JOSI MARGARETE PONZETO, UFSCar; SAMUEL REZENDE PAIVA, Cenargen; ALEXANDRE RODRIGUES CAETANO, Cenargen. |
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Título: |
Complete mitochondrial genome from South American catfish Pseudoplatystoma reticulatum (Eigenmann & Eigenmann) and its impact in Siluriformes phylogenetic tree. |
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Ano de publicação: |
2017 |
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Fonte/Imprenta: |
Genetica, v. 145, n. 1, p. 51-66, Feb. 2017. |
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DOI: |
10.1007/s10709-016-9945-7 |
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Idioma: |
Inglês |
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Conteúdo: |
The cachara (Pseudoplatystoma reticulatum) is a Neotropical freshwater catfish from family Pimelodidae (Siluriformes) native to Brazil. The species is of relative economic importance for local aquaculture production and basic biological information is under development to help boost efforts to domesticate and raise the species in commercial systems. The complete cachara mitochondrial genome was obtained by assembling Illumina RNA-seq data from pooled samples. The full mitogenome was found to be 16,576 bp in length, showing the same basic structure, order, and genetic organization observed in other Pimelodidae, with 13 protein-coding genes, 2 rNA genes, 22 trNAs, and a control region. Observed base composition was 24.63% T, 28.47% C, 31.45% A, and 15.44% G. With the exception of NAD6 and eight tRNAs, all of the observed mitochondrial genes were found to be coded on the H strand. A total of 107 SNPs were identified in P. reticulatum mtDNA, 67 of which were located in coding regions. Of these SNPs, 10 result in amino acid changes. Analysis of the obtained sequence with 94 publicly available full Siluriformes mitogenomes resulted in a phylogenetic tree that generally agreed with available phylogenetic proposals for the order. The first report of the complete Pseudoplatystoma reticulatum mitochondrial genome sequence revealed general gene organization, structure, content, and order similar to most vertebrates. Specific sequence and content features were observed and may have functional attributes which are now available for further investigation. MenosThe cachara (Pseudoplatystoma reticulatum) is a Neotropical freshwater catfish from family Pimelodidae (Siluriformes) native to Brazil. The species is of relative economic importance for local aquaculture production and basic biological information is under development to help boost efforts to domesticate and raise the species in commercial systems. The complete cachara mitochondrial genome was obtained by assembling Illumina RNA-seq data from pooled samples. The full mitogenome was found to be 16,576 bp in length, showing the same basic structure, order, and genetic organization observed in other Pimelodidae, with 13 protein-coding genes, 2 rNA genes, 22 trNAs, and a control region. Observed base composition was 24.63% T, 28.47% C, 31.45% A, and 15.44% G. With the exception of NAD6 and eight tRNAs, all of the observed mitochondrial genes were found to be coded on the H strand. A total of 107 SNPs were identified in P. reticulatum mtDNA, 67 of which were located in coding regions. Of these SNPs, 10 result in amino acid changes. Analysis of the obtained sequence with 94 publicly available full Siluriformes mitogenomes resulted in a phylogenetic tree that generally agreed with available phylogenetic proposals for the order. The first report of the complete Pseudoplatystoma reticulatum mitochondrial genome sequence revealed general gene organization, structure, content, and order similar to most vertebrates. Specific sequence and content features were observed and may have func... Mostrar Tudo |
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Palavras-Chave: |
Cachara; Mitogenome; Peixe-gato. |
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Thesagro: |
Aquicultura; Filogenia; Melhoramento genético animal; Peixe de água doce; RNA. |
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Thesaurus Nal: |
Catfish; Mitochondrial genome; Phylogeny; Pseudoplatystoma reticulatum; Siluriformes; Single nucleotide polymorphism. |
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Categoria do assunto: |
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L Ciência Animal e Produtos de Origem Animal |
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URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/item/180992/1/Villela2017-Article-CompleteMitochondrialGenomeFro.pdf
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Marc: |
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008 2017 bl uuuu u00u1 u #d
024 7 $a10.1007/s10709-016-9945-7$2DOI
100 1 $aVILLELA, L. C. V.
245 $aComplete mitochondrial genome from South American catfish Pseudoplatystoma reticulatum (Eigenmann & Eigenmann) and its impact in Siluriformes phylogenetic tree.$h[electronic resource]
260 $c2017
520 $aThe cachara (Pseudoplatystoma reticulatum) is a Neotropical freshwater catfish from family Pimelodidae (Siluriformes) native to Brazil. The species is of relative economic importance for local aquaculture production and basic biological information is under development to help boost efforts to domesticate and raise the species in commercial systems. The complete cachara mitochondrial genome was obtained by assembling Illumina RNA-seq data from pooled samples. The full mitogenome was found to be 16,576 bp in length, showing the same basic structure, order, and genetic organization observed in other Pimelodidae, with 13 protein-coding genes, 2 rNA genes, 22 trNAs, and a control region. Observed base composition was 24.63% T, 28.47% C, 31.45% A, and 15.44% G. With the exception of NAD6 and eight tRNAs, all of the observed mitochondrial genes were found to be coded on the H strand. A total of 107 SNPs were identified in P. reticulatum mtDNA, 67 of which were located in coding regions. Of these SNPs, 10 result in amino acid changes. Analysis of the obtained sequence with 94 publicly available full Siluriformes mitogenomes resulted in a phylogenetic tree that generally agreed with available phylogenetic proposals for the order. The first report of the complete Pseudoplatystoma reticulatum mitochondrial genome sequence revealed general gene organization, structure, content, and order similar to most vertebrates. Specific sequence and content features were observed and may have functional attributes which are now available for further investigation.
650 $aCatfish
650 $aMitochondrial genome
650 $aPhylogeny
650 $aPseudoplatystoma reticulatum
650 $aSiluriformes
650 $aSingle nucleotide polymorphism
650 $aAquicultura
650 $aFilogenia
650 $aMelhoramento genético animal
650 $aPeixe de água doce
650 $aRNA
653 $aCachara
653 $aMitogenome
653 $aPeixe-gato
700 1 $aALVES, A. L.
700 1 $aVARELA, E. S.
700 1 $aYAMAGISHI, M. E. B.
700 1 $aGIACHETTO, P. F.
700 1 $aSILVA, N. M. A. da
700 1 $aPONZETTO, J. M.
700 1 $aPAIVA, S. R.
700 1 $aCAETANO, A. R.
773 $tGenetica$gv. 145, n. 1, p. 51-66, Feb. 2017.
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Registro original: |
Embrapa Recursos Genéticos e Biotecnologia (CENARGEN) |
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