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Registro Completo |
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Biblioteca(s): |
Embrapa Recursos Genéticos e Biotecnologia. |
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Data corrente: |
10/02/2017 |
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Data da última atualização: |
29/03/2023 |
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Tipo da produção científica: |
Resumo em Anais de Congresso |
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Autoria: |
LOBO, F. P.; CINTRA, L. C.; VARELA, E. S.; ALVES, A. L.; SILVA, N. M. A. da; IANELLA, P.; PAIVA, S. R.; CAETANO, A. R. |
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Afiliação: |
FRANCISCO PEREIRA LOBO, CNPTIA; LEANDRO CARRIJO CINTRA, CNPTIA; EDUARDO SOUSA VARELA, CNPASA; ANDERSON LUIS ALVES, CNPASA; NAIARA MILAGRES AUGUSTO DA SILVA, CENARGEN; PATRICIA IANELLA, CENARGEN; SAMUEL REZENDE PAIVA, SRI; ALEXANDRE RODRIGUES CAETANO, CENARGEN. |
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Título: |
Genome Sequencing and de novo assembly of the South American Tiger Catfish (Pseudoplatystoma punctifer). |
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Ano de publicação: |
2016 |
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Fonte/Imprenta: |
In: PLANT & ANIMAL GENOME CONFERENCE, 24., 2016, San Diego, CA. [Abstracts...]. San Diego: [s. n.], 2016. |
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Páginas: |
Não paginado. |
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Idioma: |
Inglês |
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Notas: |
PAG 2016. Pôster P0481. |
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Conteúdo: |
The South American Tiger Catfish (Pseudoplatystoma punctifer) is a freshwater fish species naturally found in the Amazon river basin with an important role in local community and commercial fishing. Recent efforts to domesticate and raise the species in aquaculture systems has led to >10-fold production increases in the last decade. Current production levels are >15,000mt/year. Recently stablished initiatives to structure genetic improvement programs for increasing productivity-associated traits could greatly benefit from using genomic tools for broodstock management and assisted genetic evaluations and breeding. Multiple shotgun libraries with two different insert sizes and multiple Nextera mate pair libraries with three different sizes were sequenced (2x160bps) with Illumina HiSeq2000 technology. A total of 124.8Gbp quality-filtered nucleotides were sequenced which amount to 85x mean genome coverage, considering previously published information (C-value = 1.12pg = 1.095Gbp). Initial sequence assembly was performed with SOAPdenovo and generated 686.171 scaffolds spanning 1.41 Gbp (N50 scaffold length: 908Kbp, L50 scaffold count: 420). Gene model prediction is underway with MAKER2 using as extrinsic evidence protein and EST data from phylogenetically related taxa. This represents the first report of a draft genome sequence for this species, which will be a valuable resource for basic biology studies, and marker detection/selection for use in genetic improvement and resource conservation activities. MenosThe South American Tiger Catfish (Pseudoplatystoma punctifer) is a freshwater fish species naturally found in the Amazon river basin with an important role in local community and commercial fishing. Recent efforts to domesticate and raise the species in aquaculture systems has led to >10-fold production increases in the last decade. Current production levels are >15,000mt/year. Recently stablished initiatives to structure genetic improvement programs for increasing productivity-associated traits could greatly benefit from using genomic tools for broodstock management and assisted genetic evaluations and breeding. Multiple shotgun libraries with two different insert sizes and multiple Nextera mate pair libraries with three different sizes were sequenced (2x160bps) with Illumina HiSeq2000 technology. A total of 124.8Gbp quality-filtered nucleotides were sequenced which amount to 85x mean genome coverage, considering previously published information (C-value = 1.12pg = 1.095Gbp). Initial sequence assembly was performed with SOAPdenovo and generated 686.171 scaffolds spanning 1.41 Gbp (N50 scaffold length: 908Kbp, L50 scaffold count: 420). Gene model prediction is underway with MAKER2 using as extrinsic evidence protein and EST data from phylogenetically related taxa. This represents the first report of a draft genome sequence for this species, which will be a valuable resource for basic biology studies, and marker detection/selection for use in genetic improvement and resource ... Mostrar Tudo |
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Palavras-Chave: |
Bioinformática; Genômica; Sequenciamento de genoma. |
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Thesaurus Nal: |
Bioinformatics; Genome assembly; Genomics; Sequence analysis. |
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Categoria do assunto: |
X Pesquisa, Tecnologia e Engenharia |
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URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/item/140246/1/PAG-p0481.pdf
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Marc: |
LEADER 02464nam a2200301 a 4500
001 2063462
005 2023-03-29
008 2016 bl uuuu u01u1 u #d
100 1 $aLOBO, F. P.
245 $aGenome Sequencing and de novo assembly of the South American Tiger Catfish (Pseudoplatystoma punctifer).$h[electronic resource]
260 $aIn: PLANT & ANIMAL GENOME CONFERENCE, 24., 2016, San Diego, CA. [Abstracts...]. San Diego: [s. n.]$c2016
300 $aNão paginado.
500 $aPAG 2016. Pôster P0481.
520 $aThe South American Tiger Catfish (Pseudoplatystoma punctifer) is a freshwater fish species naturally found in the Amazon river basin with an important role in local community and commercial fishing. Recent efforts to domesticate and raise the species in aquaculture systems has led to >10-fold production increases in the last decade. Current production levels are >15,000mt/year. Recently stablished initiatives to structure genetic improvement programs for increasing productivity-associated traits could greatly benefit from using genomic tools for broodstock management and assisted genetic evaluations and breeding. Multiple shotgun libraries with two different insert sizes and multiple Nextera mate pair libraries with three different sizes were sequenced (2x160bps) with Illumina HiSeq2000 technology. A total of 124.8Gbp quality-filtered nucleotides were sequenced which amount to 85x mean genome coverage, considering previously published information (C-value = 1.12pg = 1.095Gbp). Initial sequence assembly was performed with SOAPdenovo and generated 686.171 scaffolds spanning 1.41 Gbp (N50 scaffold length: 908Kbp, L50 scaffold count: 420). Gene model prediction is underway with MAKER2 using as extrinsic evidence protein and EST data from phylogenetically related taxa. This represents the first report of a draft genome sequence for this species, which will be a valuable resource for basic biology studies, and marker detection/selection for use in genetic improvement and resource conservation activities.
650 $aBioinformatics
650 $aGenome assembly
650 $aGenomics
650 $aSequence analysis
653 $aBioinformática
653 $aGenômica
653 $aSequenciamento de genoma
700 1 $aCINTRA, L. C.
700 1 $aVARELA, E. S.
700 1 $aALVES, A. L.
700 1 $aSILVA, N. M. A. da
700 1 $aIANELLA, P.
700 1 $aPAIVA, S. R.
700 1 $aCAETANO, A. R.
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Registro original: |
Embrapa Recursos Genéticos e Biotecnologia (CENARGEN) |
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Biblioteca |
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Registro Completo
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Biblioteca(s): |
Embrapa Milho e Sorgo. |
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Data corrente: |
29/11/2011 |
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Data da última atualização: |
29/11/2011 |
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Tipo da produção científica: |
Resumo em Anais de Congresso |
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Autoria: |
SILVA, R. B.; RODRIGUES, T. B.; MOURÃO, H. C. M.; SOUZA, C. S. F.; BOREGAS, K. G. B.; SILVA, C. G. M.; RAMOS, E. C.; TORRES, A. A. G.; MENDONÇA, R. S.; VALICENTE, F. H. |
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Afiliação: |
FERNANDO HERCOS VALICENTE, CNPMS. |
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Título: |
Detecção do gene cry1 em cepas de Bacillus thuringiensis visando o controle de Spodoptera frugiperda (J. E. Smith) (Lepidoptera: noctuidae). |
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Ano de publicação: |
2011 |
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Fonte/Imprenta: |
In: SIMPOSIO DE CONTROLE BIOLÓGICO, 12., 2011, São Paulo. Mudanças climáticas e sustentabilidade: quebra de paradigmas: resumos. São Paulo: Sociedade Entomológica do Brasil, 2011. p. 221. |
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Idioma: |
Português |
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Palavras-Chave: |
Cristais protéicos. |
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Thesagro: |
Bactéria. |
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Categoria do assunto: |
S Ciências Biológicas |
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URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/item/48255/1/Deteccao-gene.pdf
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Marc: |
LEADER 00904nam a2200229 a 4500
001 1907594
005 2011-11-29
008 2011 bl uuuu u00u1 u #d
100 1 $aSILVA, R. B.
245 $aDetecção do gene cry1 em cepas de Bacillus thuringiensis visando o controle de Spodoptera frugiperda (J. E. Smith) (Lepidoptera$bnoctuidae).$h[electronic resource]
260 $aIn: SIMPOSIO DE CONTROLE BIOLÓGICO, 12., 2011, São Paulo. Mudanças climáticas e sustentabilidade: quebra de paradigmas: resumos. São Paulo: Sociedade Entomológica do Brasil, 2011. p. 221.$c2011
650 $aBactéria
653 $aCristais protéicos
700 1 $aRODRIGUES, T. B.
700 1 $aMOURÃO, H. C. M.
700 1 $aSOUZA, C. S. F.
700 1 $aBOREGAS, K. G. B.
700 1 $aSILVA, C. G. M.
700 1 $aRAMOS, E. C.
700 1 $aTORRES, A. A. G.
700 1 $aMENDONÇA, R. S.
700 1 $aVALICENTE, F. H.
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Registro original: |
Embrapa Milho e Sorgo (CNPMS) |
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