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Registro Completo |
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Biblioteca(s): |
Embrapa Agroindústria de Alimentos; Embrapa Mandioca e Fruticultura. |
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Data corrente: |
21/12/2022 |
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Data da última atualização: |
27/06/2023 |
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Tipo da produção científica: |
Artigo em Periódico Indexado |
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Autoria: |
SANTOS, C. S. DOS; SOUSA, M. B.; BRITO, A. C.; OLIVEIRA, L. A. de; CARVALHO, C. W. P. de; OLIVEIRA, E. J. de. |
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Afiliação: |
CRISTIANO SILVA DOS SANTOS, UFRB; MASSAINE BANDEIRA SOUSA, UFRB; ANA CARLA BRITO; LUCIANA ALVES DE OLIVEIRA, CNPMF; CARLOS WANDERLEI PILER DE CARVALHO, CTAA; EDER JORGE DE OLIVEIRA, CNPMF. |
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Título: |
Genome-wide association study of cassava starch paste properties. |
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Ano de publicação: |
2022 |
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Fonte/Imprenta: |
PLoS One , v. 17, n. 1, e0262888, 2022. |
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ISSN: |
1932-6203 |
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DOI: |
https://doi.org/10.1371/journal.pone.0262888 |
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Idioma: |
Inglês |
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Conteúdo: |
An understanding of cassava starch paste properties (CSPP) can contribute to the selection of clones with differentiated starches. This study aimed to identify genomic regions associated with CSPP using different genome-wide association study (GWAS) methods (MLM, MLMM, and Farm-CPU). The GWAS was performed using 23,078 single-nucleotide polymorphisms (SNPs). The rapid viscoanalyzer (RVA) parameters were pasting temperature (PastTemp), peak viscosity (PeakVisc), hot-paste viscosity (Hot-PVisc), cool-paste viscosty (Cold-PVisc), final viscosity (FinalVis), breakdown (BreDow), and setback (Setback). Broad phenotypic and molecular diversity was identified based on the genomic kinship matrix. The broad-sense heritability estimates (h2) ranged from moderate to high magnitudes (0.66 to 0.76). The linkage disequilibrium (LD) declined to between 0.3 and 2.0 Mb (r2<0.1) for most chromosomes, except chromosome 17, which exhibited an extensive LD. Thirteen SNPs were found to be significantly associated with CSPP, on chromosomes 3, 8, 17, and 18. Only the BreDow trait had no associated SNPs. The regional marker-trait associations on chromosome 18 indicate a LD block between 2907312 and 3567816 bp and that SNP S18_3081635 was associated with SetBack, FinalVis, and Cold-PVisc (all three GWAS methods) and with Hot-PVisc (MLM), indicating that this SNP can track these four traits simultaneously. The variance explained by the SNPs ranged from 0.13 to 0.18 for Set-Back, FinalVis, and Cold-PVisc and from 0.06 to 0.09 for PeakVisc and Hot-PVisc. The results indicated additive effects of the genetic control of Cold-PVisc, FinalVis, Hot-PVisc,and SetBack, especially on the large LD block on chromosome 18. One transcript encoding the glycosyl hydrolase family 35 enzymes on chromosome 17 and one encoding the mannose-p-dolichol utilization defect 1 protein on chromosome 18 were the most likely candidate genes for the regulation of CSPP. These results underline the potential for the assisted selection of high-value starches to improve cassava root quality through breeding programs. MenosAn understanding of cassava starch paste properties (CSPP) can contribute to the selection of clones with differentiated starches. This study aimed to identify genomic regions associated with CSPP using different genome-wide association study (GWAS) methods (MLM, MLMM, and Farm-CPU). The GWAS was performed using 23,078 single-nucleotide polymorphisms (SNPs). The rapid viscoanalyzer (RVA) parameters were pasting temperature (PastTemp), peak viscosity (PeakVisc), hot-paste viscosity (Hot-PVisc), cool-paste viscosty (Cold-PVisc), final viscosity (FinalVis), breakdown (BreDow), and setback (Setback). Broad phenotypic and molecular diversity was identified based on the genomic kinship matrix. The broad-sense heritability estimates (h2) ranged from moderate to high magnitudes (0.66 to 0.76). The linkage disequilibrium (LD) declined to between 0.3 and 2.0 Mb (r2<0.1) for most chromosomes, except chromosome 17, which exhibited an extensive LD. Thirteen SNPs were found to be significantly associated with CSPP, on chromosomes 3, 8, 17, and 18. Only the BreDow trait had no associated SNPs. The regional marker-trait associations on chromosome 18 indicate a LD block between 2907312 and 3567816 bp and that SNP S18_3081635 was associated with SetBack, FinalVis, and Cold-PVisc (all three GWAS methods) and with Hot-PVisc (MLM), indicating that this SNP can track these four traits simultaneously. The variance explained by the SNPs ranged from 0.13 to 0.18 for Set-Back, FinalVis, and Cold-PVis... Mostrar Tudo |
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Thesagro: |
Fécula; Genoma; Mandioca. |
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Thesaurus Nal: |
Cassava starch; Food paste; Genomics. |
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Categoria do assunto: |
X Pesquisa, Tecnologia e Engenharia |
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URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/doc/1150198/1/pone.0262888.pdf
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Marc: |
LEADER 02860naa a2200277 a 4500
001 2150198
005 2023-06-27
008 2022 bl uuuu u00u1 u #d
022 $a1932-6203
024 7 $ahttps://doi.org/10.1371/journal.pone.0262888$2DOI
100 1 $aSANTOS, C. S. DOS
245 $aGenome-wide association study of cassava starch paste properties.$h[electronic resource]
260 $c2022
520 $aAn understanding of cassava starch paste properties (CSPP) can contribute to the selection of clones with differentiated starches. This study aimed to identify genomic regions associated with CSPP using different genome-wide association study (GWAS) methods (MLM, MLMM, and Farm-CPU). The GWAS was performed using 23,078 single-nucleotide polymorphisms (SNPs). The rapid viscoanalyzer (RVA) parameters were pasting temperature (PastTemp), peak viscosity (PeakVisc), hot-paste viscosity (Hot-PVisc), cool-paste viscosty (Cold-PVisc), final viscosity (FinalVis), breakdown (BreDow), and setback (Setback). Broad phenotypic and molecular diversity was identified based on the genomic kinship matrix. The broad-sense heritability estimates (h2) ranged from moderate to high magnitudes (0.66 to 0.76). The linkage disequilibrium (LD) declined to between 0.3 and 2.0 Mb (r2<0.1) for most chromosomes, except chromosome 17, which exhibited an extensive LD. Thirteen SNPs were found to be significantly associated with CSPP, on chromosomes 3, 8, 17, and 18. Only the BreDow trait had no associated SNPs. The regional marker-trait associations on chromosome 18 indicate a LD block between 2907312 and 3567816 bp and that SNP S18_3081635 was associated with SetBack, FinalVis, and Cold-PVisc (all three GWAS methods) and with Hot-PVisc (MLM), indicating that this SNP can track these four traits simultaneously. The variance explained by the SNPs ranged from 0.13 to 0.18 for Set-Back, FinalVis, and Cold-PVisc and from 0.06 to 0.09 for PeakVisc and Hot-PVisc. The results indicated additive effects of the genetic control of Cold-PVisc, FinalVis, Hot-PVisc,and SetBack, especially on the large LD block on chromosome 18. One transcript encoding the glycosyl hydrolase family 35 enzymes on chromosome 17 and one encoding the mannose-p-dolichol utilization defect 1 protein on chromosome 18 were the most likely candidate genes for the regulation of CSPP. These results underline the potential for the assisted selection of high-value starches to improve cassava root quality through breeding programs.
650 $aCassava starch
650 $aFood paste
650 $aGenomics
650 $aFécula
650 $aGenoma
650 $aMandioca
700 1 $aSOUSA, M. B.
700 1 $aBRITO, A. C.
700 1 $aOLIVEIRA, L. A. de
700 1 $aCARVALHO, C. W. P. de
700 1 $aOLIVEIRA, E. J. de
773 $tPLoS One$gv. 17, n. 1, e0262888, 2022.
Download
Esconder MarcMostrar Marc Completo |
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Registro original: |
Embrapa Mandioca e Fruticultura (CNPMF) |
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Biblioteca |
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| Registros recuperados : 48 | |
| 3. |  | ROCHA, C. R. M. da; CRUZ, E. D.; MARTINS, L. de L.; SANTOS, C. S. dos. Caracterização de frutos oriundos de clones de cupuaçu. In: CONGRESSO BRASILEIRO DE FRUTICULTURA, 20.; ANNUAL MEETING OF THE INTERAMERICAN SOCIETY FOR TROPICAL HORTICULTURE, 54., 2008, Vitória. Frutas para todos: estratégias, tecnologias e visão sustentável: anais. Vitória: INCAPER: Sociedade Brasileira de Fruticultura, 2008. 1 CD-ROM.| Tipo: Artigo em Anais de Congresso |
| Biblioteca(s): Embrapa Amazônia Oriental. |
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| 8. | | MANOS, M. G. L.; GONCALVES, L. O.; RIBEIRO, J. M. C.; SANTOS, C. S. Sistema participativo de garantia de rede de agroecologia plantar para vida: trajetória e construção coletiva. In: CONGRESSO DA SOCIEDADE BRASILEIRA DE ECONOMIA, ADMINISTRAÇÃO E SOCIOLOGIA RURAL, 58., 2020, Foz do Iguaçu. Cooperativismo, inovação e sustentabilidade para o desenvolvimento rural: anais. Foz do Iguaçu: SOBER, 2020. 4 p. SOBER 2020.| Tipo: Artigo em Anais de Congresso |
| Biblioteca(s): Embrapa Tabuleiros Costeiros. |
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| 9. | | SANTOS, C. S. dos; JESUS, V. L. T. de; McINTOSH, D.; BERTO, B. P.; LOPES, C. W. G. Co-infection by Tritrichomonas foetus and Pentatrichomonas hominis in asymptomatic cats. Pesquisa Veterinária Brasileira, Brasília, DF, v. 35, n. 12, p. 980-988, dez. 2015.| Biblioteca(s): Embrapa Unidades Centrais. |
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| 10. | | RIBEIRO, M. E. R.; KOLLING, G. J.; ZANELA, M. B.; SANTOS, C. S. dos; PERIN, L.; FISCHER, V. Composição do leite normal e do LINA em rebanho jersey: resultados preliminares 2011. In.: CONFERENCIA INTERNACIONAL SOBRE LECHE INESTABLE, 2., 2011, Colonia. [Anais...]. Colonia: Instituto Nacional de Investigación Agropecuaria de Uruguay, 2011. p. 62.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Clima Temperado. |
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| 12. | | FEITOSA FILHO, J. C.; CAVALCANTE, L. F.; SANTOS, C. S.; LEITE JUNIOR, G. P.; LOPES, W. F.; PINTO, J. M. Estudos de doses de nitrogenio e de potassio aplicadas em banana por fertirrigacao em comparacao a adubacao convencional. In: WORKSHOP DE FERTIRRIGACAO, 2., 2001, Piracicaba. Artigos cientificos... Piracicaba: ESALQ/USP, 2001. p. 48-66.| Tipo: Artigo em Anais de Congresso |
| Biblioteca(s): Embrapa Semiárido. |
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| 13. | | FEITOSA FILHO, J. C.; CAVALCANTE, L. F.; LEITE JUNIOR, G. P.; SANTOS, C. S.; LOPES, W. F.; PINTO, J. M. Estudos de doses de nitrogenio e de potassio aplicadas no pimentao por fertirrigacao em comparacao a adubacao convencional. In: WORKSHOP DE FERTIRRIGACAO, 2., 2001, Piracicaba. Artigos cientificos... Piracicaba: ESALQ: USP, 2001. p. 32-47.| Tipo: Artigo em Anais de Congresso |
| Biblioteca(s): Embrapa Semiárido. |
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| 14. | | FEITOSA FILHO, J. C.; LEITE JUNIOR, G. P.; CAVALCANTE, L. F.; SANTOS, C. S.; LOPES, W. F.; PINTO, J. M. Resposta da cultura do pimentao a diferentes doses de N e K aplicadas por fertirrigacao em comparacao a adubacao convencional. In: WORKSHOP DE FERTIRRIGACAO, 2., 2001, Piracicaba. Artigos cientificos... Piracicaba: ESALQ/USP, 2001. p. 19-31.| Tipo: Artigo em Anais de Congresso |
| Biblioteca(s): Embrapa Semiárido. |
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| 16. | | SANTOS, C. S. dos; MATOS, N. M. S. de; REZENDE, T. T.; MAURI, J.; RODRIGUES, G. C.; VEIGA, A. D.; BARTHOLO, G. F.; CARVALHO, M. A. de F. Agronomic, anatomic and physiological characterization of Coffea arabica L. genotypes on irrigated system in the Central Cerrado. Coffee Science, v. 17, e172021, 2022.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: B - 3 |
| Biblioteca(s): Embrapa Agricultura Digital; Embrapa Café; Embrapa Cerrados. |
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| 17. | | SANTOS, C. S. dos; PEREIRA, F. A. C.; MAURI, J.; VIANA, M. T. R.; RODRIGUES, G. C.; VEIGA, A. D.; BARTHOLO, G. F.; CARVALHO, M. A. de F. Assessment of leaf anatomic and physiological characteristics and genetic divergence among Coffea arabica L. cultivars in the Brazilian Savanna. Pesquisa Agropecuaria Tropical, v. 52, e73265, 2022.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: B - 1 |
| Biblioteca(s): Embrapa Agricultura Digital. |
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| 18. | | SOUZA, I. I. F.; RAMOS, C. A. N.; GUEDES JUNIOR, D. S.; SANTOS, C. S.; ELISEI, C.; ROSINHA, G. M. S.; SOARES, C. O.; ARAÚJO, F. R. Comparação de reações de imunoadsorção enzimática com antígenos recombinantes e bruto no diagnóstico de anticorpos contra Anaplasma marginale. In: JORNADA CIENTÍFICA DA EMBRAPA GADO DE CORTE, 3., 2007, Campo Grande, MS. Anais [da]... Campo Grande, MS: Embrapa Gado de Corte, 2007. p. 74 1 CD-ROM.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Gado de Corte. |
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| 19. | | SOARES, J. P. R.; BRUN, A. G.; RIBEIRO, M. E. R.; SPALLONE, M. G.; SANTOS, C. S.; RABELO, R. N.; ZANELA, M. B. Composição do leite e contagem de células somáticas de diferentes turnos de ordenha. In: ENCONTRO DE INICIAÇÃO CIENTÍFICA E PÓS-GRADUAÇÃO DA EMBRAPA CLIMA TEMPERADO, 4., 2012, Pelotas. Ciência e inovação para 2050: qual o futuro que queremos? Resumos e palestras... Pelotas: Embrapa Clima Temperado, 2012.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Clima Temperado. |
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| 20. | | AZEVEDO, S. S.; VILAR, A. L. T.; SANTOS, C. S. A. B.; CLEMENTINO, I. J.; FERNANDES, L. G.; ALVES, C. J. Spatial cluster analysis for bovine paratuberculosis in Paraiba State, Northeastern Brazil. Pesquisa Veterinária Brasileira, Rio de Janeiro, v. 37, n. 11, 1193-1197, novembro 2017. Título em português: Análise de aglomerados espaciais para paratuberculose bovina no Estado da Paraíba, Nordeste do Brasil.| Biblioteca(s): Embrapa Unidades Centrais. |
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| Registros recuperados : 48 | |
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| Nenhum registro encontrado para a expressão de busca informada. |
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