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Registro Completo |
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Biblioteca(s): |
Embrapa Agricultura Digital; Embrapa Amazônia Oriental; Embrapa Recursos Genéticos e Biotecnologia. |
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Data corrente: |
13/06/2022 |
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Data da última atualização: |
13/06/2022 |
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Tipo da produção científica: |
Artigo em Periódico Indexado |
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Autoria: |
SALIM, J. A.; SARAIVA, A. M.; ZERMOGLIO, P. F.; AGOSTINI, K.; WOLOWSKI, M.; DRUCKER, D. P.; SOARES, F. M.; BERGAMO, P. J.; VARASSIN, I. G.; FREITAS, L.; MAUES, M. M.; RECH, A. R.; VEIGA, A. K.; ACOSTA, A. L.; ARAUJO, A. C.; NOGUEIRA, A.; BLOCHTEIN, B.; FREITAS, B. M.; ALBERTINI, B. C.; MAIA-SILVA, C.; NUNES, C. E. P.; PIRES, C. S. S.; SANTOS, C. F. dos; QUEIROZ, E. P.; CARTOLANO, E. A.; OLIVEIRA, F. F. de; AMORIM, F. W.; FONTÚRBEL, F. E.; SILVA, G. V. da; CONSOLARO, H.; ALVES-DOS-SANTOS, I.; MACHADO, I. C.; SILVA, J. S.; ALEIXO, K. P.; CARVALHEIRO, L. G.; ROCCA, M. A.; PINHEIRO, M.; HRNCIR, M.; STREHER, N. S.; FERREIRA, P. A.; ALBUQUERQUE, P. M. C. de; MARUYAMA, P. K.; BORGES, R. C.; GIANNINI, T. C.; BRITO, V. L. G. |
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Afiliação: |
JOSÉ A. SALIM, USP; ANTONIO M. SARAIVA, USP; PAULA F. ZERMOGLIO, UNIVERSIDAD DE BUENOS AIRES; KAYNA AGOSTINI, UFSCAR; MARINA WOLOWSKI, UNIFAL; DEBORA PIGNATARI DRUCKER, CNPTIA; FILIPI M. SOARES, USP; PEDRO J. BERGAMO, JARDIM BOTÂNICO DO RIO DE JANEIRO; ISABELA G. VARASSIN, UFPR; LEANDRO FREITAS, JARDIM BOTÂNICO DO RIO DE JANEIRO; MARCIA MOTTA MAUES, CPATU; ANDRÉ R. RECH, UNIVERSIDADE FEDERAL DOS VALES DO JEQUITINHONHA E MUCURI, DIAMANTINA; ALLAN K. VEIGA, USP; ANDRE L. ACOSTA, INSTITUTO TECNOLÓGICO VALE, BELÉM; ANDRÉA C. ARAUJO, UFMS; ANSELMO NOGUEIRA, UFABC; BETINA BLOCHTEIN, PUCRS; BRENO M. FREITAS, UFC; BRUNO C. ALBERTINI, USP; CAMILA MAIA-SILVA, UNIVERSIDADE FEDERAL RURAL DO SEMI-ÁRIDO; CARLOS E. P. NUNES, UNIVERSITY OF STIRLING; CARMEN SILVIA SOARES PIRES, Cenargen; CHARLES F. DOS SANTOS, PUCRS; ELISA P. QUEIROZ, USP; ETIENNE A. CARTOLANO, USP; FAVÍZIA F. DE OLIVEIRA, UFBA; FELIPE W. AMORIM, UNESP; FRANCISCO E. FONTÚRBEL, PONTIFICIA UNIVERSIDAD CATÓLICA DE VALPARAÍSO, CHILE; GLEYCON V. DA SILVA, INPA; HÉLDER CONSOLARO, UNIVERSIDADE FEDERAL DE CATALÃO; ISABEL ALVES-DOS-SANTOS, USP; ISABEL C. MACHADO, UFPE; JULIANA S. SILVA, INSTITUTO FEDERAL DE EDUCAÇÃO CIÊNCIA E TECNOLOGIA DE MATO GROSSO; KÁTIA P. ALEIXO, ASSOCIAÇÃO BRASILEIRA DE ESTUDOS DAS ABELHAS; LUÍSA G. CARVALHEIRO, UFG, UNIVERSITY OF LISBOA; MÁRCIA A. ROCCA, UFS; MARDIORE PINHEIRO, UNIVERSIDADE FEDERAL DA FRONTEIRA SUL; MICHAEL HRNCIR, USP; NATHÁLIA S. STREHER, UNIVERSITY OF PITTSBURGH; PATRICIA A. FERREIRA, UFSCAR; PATRICIA M. C. DE ALBUQUERQUE, UFMA; PIETRO K. MARUYAMA, UFMG; RAFAEL C. BORGES, INSTITUTO TECNOLÓGICO VALE, BELÉM; TEREZA C. GIANNINI, INSTITUTO TECNOLÓGICO VALE, BELÉM; VINÍCIUS L. G. BRITO, UFU. |
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Título: |
Data standardization of plant-pollinator interactions. |
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Ano de publicação: |
2022 |
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Fonte/Imprenta: |
GigaScience, v. 11, p. 1-15, 2022. |
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DOI: |
https://doi.org/10.1093/gigascience/giac043 |
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Idioma: |
Inglês |
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Conteúdo: |
Abstract. Background: Animal pollination is an important ecosystem function and service, ensuring both the integrity of natural systems and human well-being. Although many knowledge shortfalls remain, some high-quality data sets on biological interactions are now available. The development and adoption of standards for biodiversity data and metadata has promoted great advances in biological data sharing and aggregation, supporting large-scale studies and science-based public policies. However, these standards are currently not suitable to fully support interaction data sharing. Results: Here we present a vocabulary of terms and a data model for sharing plant-pollinator interactions data based on the Darwin Core standard. The vocabulary introduces 48 new terms targeting several aspects of plant-pollinator interactions and can be used to capture information from different approaches and scales. Additionally, we provide solutions for data serialization using RDF, XML, and DwC-Archives and recommendations of existing controlled vocabularies for some of the terms. Our contribution supports open access to standardized data on plant-pollinator interactions. Conclusions: The adoption of the vocabulary would facilitate data sharing to support studies ranging from the spatial and temporal distribution of interactions to the taxonomic, phenological, functional, and phylogenetic aspects of plant-pollinator interactions. We expect to fill data and knowledge gaps, thus further enabling scientific research on the ecology and evolution of plant-pollinator communities, biodiversity conservation, ecosystem services, and the development of public policies. The proposed data model is flexible and can be adapted for sharing other types of interactions data by developing discipline-specific vocabularies of terms. MenosAbstract. Background: Animal pollination is an important ecosystem function and service, ensuring both the integrity of natural systems and human well-being. Although many knowledge shortfalls remain, some high-quality data sets on biological interactions are now available. The development and adoption of standards for biodiversity data and metadata has promoted great advances in biological data sharing and aggregation, supporting large-scale studies and science-based public policies. However, these standards are currently not suitable to fully support interaction data sharing. Results: Here we present a vocabulary of terms and a data model for sharing plant-pollinator interactions data based on the Darwin Core standard. The vocabulary introduces 48 new terms targeting several aspects of plant-pollinator interactions and can be used to capture information from different approaches and scales. Additionally, we provide solutions for data serialization using RDF, XML, and DwC-Archives and recommendations of existing controlled vocabularies for some of the terms. Our contribution supports open access to standardized data on plant-pollinator interactions. Conclusions: The adoption of the vocabulary would facilitate data sharing to support studies ranging from the spatial and temporal distribution of interactions to the taxonomic, phenological, functional, and phylogenetic aspects of plant-pollinator interactions. We expect to fill data and knowledge gaps, thus further enabling sc... Mostrar Tudo |
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Palavras-Chave: |
Biodiversity informatics; Biodiversity information; Darwin Core; Informação sobre biodiversidade; Informática para biodiversidade; Interação planta-polinizador; Padronização de dados; Polinizador; Pollinator; Termos de vocabulário; Vocabulary of terms. |
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Thesagro: |
Biodiversidade; Polinização. |
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Thesaurus Nal: |
Pollination. |
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Categoria do assunto: |
-- |
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URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/doc/1143956/1/AP-Data-standardization-2022.pdf
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Marc: |
LEADER 04110naa a2200829 a 4500
001 2143956
005 2022-06-13
008 2022 bl uuuu u00u1 u #d
024 7 $ahttps://doi.org/10.1093/gigascience/giac043$2DOI
100 1 $aSALIM, J. A.
245 $aData standardization of plant-pollinator interactions.$h[electronic resource]
260 $c2022
520 $aAbstract. Background: Animal pollination is an important ecosystem function and service, ensuring both the integrity of natural systems and human well-being. Although many knowledge shortfalls remain, some high-quality data sets on biological interactions are now available. The development and adoption of standards for biodiversity data and metadata has promoted great advances in biological data sharing and aggregation, supporting large-scale studies and science-based public policies. However, these standards are currently not suitable to fully support interaction data sharing. Results: Here we present a vocabulary of terms and a data model for sharing plant-pollinator interactions data based on the Darwin Core standard. The vocabulary introduces 48 new terms targeting several aspects of plant-pollinator interactions and can be used to capture information from different approaches and scales. Additionally, we provide solutions for data serialization using RDF, XML, and DwC-Archives and recommendations of existing controlled vocabularies for some of the terms. Our contribution supports open access to standardized data on plant-pollinator interactions. Conclusions: The adoption of the vocabulary would facilitate data sharing to support studies ranging from the spatial and temporal distribution of interactions to the taxonomic, phenological, functional, and phylogenetic aspects of plant-pollinator interactions. We expect to fill data and knowledge gaps, thus further enabling scientific research on the ecology and evolution of plant-pollinator communities, biodiversity conservation, ecosystem services, and the development of public policies. The proposed data model is flexible and can be adapted for sharing other types of interactions data by developing discipline-specific vocabularies of terms.
650 $aPollination
650 $aBiodiversidade
650 $aPolinização
653 $aBiodiversity informatics
653 $aBiodiversity information
653 $aDarwin Core
653 $aInformação sobre biodiversidade
653 $aInformática para biodiversidade
653 $aInteração planta-polinizador
653 $aPadronização de dados
653 $aPolinizador
653 $aPollinator
653 $aTermos de vocabulário
653 $aVocabulary of terms
700 1 $aSARAIVA, A. M.
700 1 $aZERMOGLIO, P. F.
700 1 $aAGOSTINI, K.
700 1 $aWOLOWSKI, M.
700 1 $aDRUCKER, D. P.
700 1 $aSOARES, F. M.
700 1 $aBERGAMO, P. J.
700 1 $aVARASSIN, I. G.
700 1 $aFREITAS, L.
700 1 $aMAUES, M. M.
700 1 $aRECH, A. R.
700 1 $aVEIGA, A. K.
700 1 $aACOSTA, A. L.
700 1 $aARAUJO, A. C.
700 1 $aNOGUEIRA, A.
700 1 $aBLOCHTEIN, B.
700 1 $aFREITAS, B. M.
700 1 $aALBERTINI, B. C.
700 1 $aMAIA-SILVA, C.
700 1 $aNUNES, C. E. P.
700 1 $aPIRES, C. S. S.
700 1 $aSANTOS, C. F. dos
700 1 $aQUEIROZ, E. P.
700 1 $aCARTOLANO, E. A.
700 1 $aOLIVEIRA, F. F. de
700 1 $aAMORIM, F. W.
700 1 $aFONTÚRBEL, F. E.
700 1 $aSILVA, G. V. da
700 1 $aCONSOLARO, H.
700 1 $aALVES-DOS-SANTOS, I.
700 1 $aMACHADO, I. C.
700 1 $aSILVA, J. S.
700 1 $aALEIXO, K. P.
700 1 $aCARVALHEIRO, L. G.
700 1 $aROCCA, M. A.
700 1 $aPINHEIRO, M.
700 1 $aHRNCIR, M.
700 1 $aSTREHER, N. S.
700 1 $aFERREIRA, P. A.
700 1 $aALBUQUERQUE, P. M. C. de
700 1 $aMARUYAMA, P. K.
700 1 $aBORGES, R. C.
700 1 $aGIANNINI, T. C.
700 1 $aBRITO, V. L. G.
773 $tGigaScience$gv. 11, p. 1-15, 2022.
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Registro original: |
Embrapa Agricultura Digital (CNPTIA) |
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Biblioteca |
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Tipo/Formato |
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| Registros recuperados : 34 | |
| 3. |  | BORRO, L. C.; SALIM, J. A.; MAZONI, I.; YANO, I.; JARDINE, J. G.; NESHICH, G. Improving binding affinity prediction by using a rule-based model with physical-chemical and structural descriptors of the nano-environment for protein-ligand interactions. In: CONGRESS OF THE INTERNATIONAL UNION FOR BIOCHEMISTRY AND MOLECULAR BIOLOGY, 23.; ANNUAL MEETING OF THE BRAZILIAN SOCIETY FOR BIOCHEMISTRY AND MOLECULAR BIOLOGY, 44., 2015, Foz do Iguaçu. Biochemistry for a better world: abstracts book. [Foz do Iguaçu]: SBBq, 2015. p. 153. C.047.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Agricultura Digital. |
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| 4. | | SALIM, J. A.; BORRO, L.; MAZONI, I.; YANO, I. H.; JARDINE, J. G.; NESHICH, G. Multiple structure single parameter: analysis of a single protein nano environment descriptor characterizing a shared loci on structurally aligned proteins. Bioinformatics, v. 32, n. 12, p. 1885-1887, 2016.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
| Biblioteca(s): Embrapa Agricultura Digital. |
|  |
| 6. | | MAZONI, I.; BORRO, L. C.; JARDINE, J. G.; YANO, I. H.; SALIM, J. A.; NESHICH, G. Study of specific nanoenvironments containing [alfa]-helices in all-[alfa] and ([alfa]+[beta])+([alfa]/[beta]) proteins. Plos One, v. 13, n. 7, p. 1-25, 2018. Artigo e0200018.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
| Biblioteca(s): Embrapa Agricultura Digital; Embrapa Territorial. |
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| 8. | | JARDINE, J. G.; NESHICH, I. A. P.; MORAES, F. R. de; MAZONI, I.; MANCINI, A.; SALIM, J. A.; NESHICH, G. Generation of lipase B mutants with increased surface hydrophobicity in order to improve biodiesel catalysis. In: INTERNATIONAL CONFERENCE OF THE BRAZILIAN ASSOCIATION FOR BIOINFORMATICS AND COMPUTATIONAL BIOLOGY, 5., 2009, Angra dos Reis. Abstracts book... Angra dos Reis: ABBCB, 2009. Não paginado. X-Meeting 2009.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Agricultura Digital. |
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| 9. | | SALIM, J. A.; MAZONI, I.; MANCINI, A. L.; MORAES, F. R.; JARDINE, J. G.; NESHICH, I. P.; NESHICH, G. MSSP: a web-based application for analysis of selected parameter from multiple structures in a graphical manner. In: INTERNATIONAL CONFERENCE OF THE BRAZILIAN ASSOCIATION FOR BIOINFORMATICS AND COMPUTATIONAL BIOLOGY, 5., 2009, Angra dos Reis. Abstracts book... Angra dos Reis: ABBCB, 2009. Não paginado. X-Meeting 2009.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Agricultura Digital. |
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| 10. | | NESHICH, I. A. P.; MAZONI, I.; SALIM, J. A.; MORAES, F. R. de; NISHIMURA, L.; JARDINE, J. G.; NESHICH, G. Pathogenic Prion Proteins (PrP) have higher electrostatic potential pattern than normal cellular prion protein in a specific region. In: ANNUAL MEETING OF THE SBBq, 40., 2011, Foz do Iguaçu. [Proceedings...]. São Paulo, SP: Brazilian Society for Biochemistry and Molecular Biology, 2011. Não paginado.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Agricultura Digital. |
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| 12. | | NESHICH, I. A. P.; MORAES, F. R. de; SALIM, J. A.; MAZONI, I.; MANCINI, A.; JARDINE, J. G.; NESHICH, G. Surface hydrophobicity index (SHI): insight into the mechanisms of protein-protein associations. In: INTERNATIONAL CONFERENCE OF THE BRAZILIAN ASSOCIATION FOR BIOINFORMATICS AND COMPUTATIONAL BIOLOGY, 5., 2009, Angra dos Reis. Abstracts book... Angra dos Reis: ABBCB, 2009. Não paginado. X-Meeting 2009| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Agricultura Digital. |
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| 13. | | MAZONI, I.; SALIM, J. A; NESHICH, I. A. P.; MORAES, F. R. de; NISHIMURA, L.; JARDINE, J. G.; NESHICH, G. Structure function relationship de convoluted to a level of physical chemical descriptors: case study - lysozyme / lactalbumine differences. In: ANNUAL MEETING OF THE SBBq, 40., 2011, Foz do Iguaçu. [Proceedings...]. São Paulo, SP: Brazilian Society for Biochemistry and Molecular Biology, 2011. Não paginado.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Agricultura Digital. |
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| 14. | | NESHICH, I. A. P.; MORAES, F. de; SALIM, J. A.; MAZONI, I.; JARDINE, J. G.; NESHICH, G. Size matters: surface hydrophobicity index (SHI) describes the impact of the size of interface area on oligomerization driven by hydrophobic effect. In: ANNUAL INTERNATIONAL CONFERENCE ON INTELLIGENT SYSTEMS FOR MOLECULAR BIOLOGY; STRUCTURAL BIOINFORMATICS AND COMPUTATIONAL BIOPHYSICS MEETING, 8., 2012, Long Beach, California. Abstracts... California: ISMB, 2012. Não paginado. 3Dsig 2012.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Agricultura Digital. |
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| 15. | | JARDINE, J. G.; NESHICH, I. A. P.; MAZONI, I.; YANO, I. H.; MORAES, F. R. de; SALIM, J. A.; BORRO, L.; NISHIMURA, L. S.; NESHICH, G. Biologia computacional molecular e suas aplicações na agricultura. In: MASSRUHÁ, S. M. F. S.; LEITE, M. A. de A.; LUCHIARI JUNIOR, A.; ROMANI, L. A. S. (Ed.). Tecnologias da informação e comunicação e suas relações com a agricultura. Brasília, DF: Embrapa, 2014. Cap. 6. p. 101-117.| Tipo: Capítulo em Livro Técnico-Científico |
| Biblioteca(s): Embrapa Agricultura Digital. |
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| 16. | | SALIM, J. A.; VON ZUBEN, F. J.; MORAES, F. R. de; NESHICH, I. A. P.; MAZONI, I.; JARDINE, J.; NESHICH, G. Characterization of catalytic site residues using STING_DB structural descriptors. In: ANNUAL INTERNATIONAL CONFERENCE ON INTELLIGENT SYSTEMS FOR MOLECULAR BIOLOGY; STRUCTURAL BIOINFORMATICS AND COMPUTATIONAL BIOPHYSICS CONFERENCE MEETING, 8., 2012, Long Beach, California. Abstracts... California: ISCB, 2012. Não paginado. Poster. 3DSIG 2012.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Agricultura Digital. |
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| 17. | | MAZONI, I.; BORRO, L. C.; MANCINI, A.; SALIM, J. A.; MORAES, F. R.; JARDINE, J. G.; NESHICH, I. P.; NESHICH, G. Computational analysis of the secondary structure elements based on the physical chemical and geometrical descriptors and statistics data. In: INTERNATIONAL CONFERENCE OF THE BRAZILIAN ASSOCIATION FOR BIOINFORMATICS AND COMPUTATIONAL BIOLOGY, 5., 2009, Angra dos Reis. Abstracts book... Angra dos Reis: ABBCB, 2009. Não paginado X-Meeting 2009.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Agricultura Digital. |
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| 18. | | JARDINE, J. G.; NESHICH, I. A. P.; MAZONI, I.; YANO, I. H.; MORAES, F. R. de; SALIM, J. A; BORRO, L.; NISHIMURA, L. S.; NESHICH, G. Computational Molecular Biology and its applications in agriculture. In: MASSRUHÁ, S. M. F. S.; LEITE, M. A. de A.; LUCHIARI JUNIOR, A.; ROMANI, L. A. S. (Ed.). Information and communication technologies and their relations with agriculture. Brasília, DF: Embrapa, 2016. ch. 6, p. 103-118.| Tipo: Capítulo em Livro Técnico-Científico |
| Biblioteca(s): Embrapa Agricultura Digital. |
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| 19. | | MAZONI, I.; BORRO, L. C.; MANCINI, A.; SALIM, J. A.; MORAES, F. R.; JARDINE, J. G.; NESHICH, I. A. P.; NESHICH, G. Comparison between physical chemical and geometrical characteristics of the amino acids present in alpha-helices and beta-sheets. In: INTERNATIONAL CONFERENCE OF THE BRAZILIAN ASSOCIATION FOR BIOINFORMATICS AND COMPUTATIONAL BIOLOGY, 5., 2009, Angra dos Reis. Abstracts book... Angra dos Reis: ABBCB, 2009. Não pagiando. X-Meeting 2009.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Agricultura Digital. |
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| 20. | | KOFFLER, S.; SOARES, F. M.; GHILARDI-LOPES, N. P.; ALBERTINI, B.; DRUCKER, D. P.; SALIM, J. A.; NUNES-SILVA, P.; FRANCOY, T. M.; SARAIVA, A. M.; CARVELL, C. FIT Count Brasil: monitoramento de visitantes florais por contagem. Santo André, SP: Universidade Federal do ABC, 2022. 90 p. (Ciência cidadã, v. 7).| Tipo: Autoria/Organização/Edição de Livros |
| Biblioteca(s): Embrapa Agricultura Digital. |
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| Registros recuperados : 34 | |
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| Nenhum registro encontrado para a expressão de busca informada. |
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