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Registro Completo |
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Biblioteca(s): |
Embrapa Mandioca e Fruticultura. |
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Data corrente: |
25/03/2008 |
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Data da última atualização: |
05/07/2023 |
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Tipo da produção científica: |
Artigo em Periódico Indexado |
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Autoria: |
LESCOT, M.; PIFFANELLI, P.; CIAMPI, A. Y.; RUIZ, M.; BLANC, G.; LEEBENS-MACK, J.; SILVA, F. R. da; SANTOS, C. M. R.; D'HONT, A.; GARSMEUR, O.; VILARINHOS, A. D.; KANAMORI, H.; MATSUMOTO, T.; RONNING, C. M.; CHEUNG, F.; HAAS, B. J.; ALTHOFF, R.; ARBOGAST, T.; HIRE, E.; PAPPAS JUNIOR, G.; SASAKI, T.; SOUZA JUNIOR, M. T.; MILLER, R. N. G.; GLASZMANN, J. C.; TOWN, C. D. |
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Afiliação: |
Magali Lescot, CIRAD/IBSM; Pietro Piffanelli, CIRAD/PADANO; Ana Y. Ciampi, CENARGEN; Manuel Ruiz, CIRAD; Guillaume Blanc, IGS; Jim Leebens-Mack, University of Georgia; Felipe R. da Silva, CENARGEN; Candice M. R. Santos, CENARGEN; Angélique D'Hont, CIRAD; Olivier Garsmeur, CIRAD; Alberto Duarte Vilarinhos, CNPMF; Hiroyuki Kanamori, RGP; Takashi Matsumoto, RGP; Catherine M. Ronning, J. Craig Venter Institute; Foo Cheung, J. Craig Venter Institute; Brian J. Haas, J. Craig Venter Institute; Ryan Althoff, J. Craig Venter Institute; Tammy Arbogast, J. Craig Venter Institute; Erin Hine, J. Craig Venter Institute; Georgios J. Pappas Junior, UCB; Takuji Sasaki, RGP; Manoel T. Souza Junior, CENARGEN; Robert N. G. Miller, UCB; Jean-Christophe Glaszmann, CIRAD; Christopher D. Town, J. Craig Venter Institute. |
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Título: |
Insights into the Musa genome: syntenic relationships to rice and between Musa species. |
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Ano de publicação: |
2007 |
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Fonte/Imprenta: |
BMC Genomics, London, v. 9, 2007. |
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Descrição Física: |
il. |
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ISSN: |
1471-2164 |
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Idioma: |
Inglês |
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Conteúdo: |
Musa species (Zingiberaceae, Zingiberales) including bananas and plantains are collectively the fourth most important crop in developing countries. Knowledge concerning Musa genome structure and the origin of distinct cultivars has greatly increased over the last few years. Until now, however, no large-scale analyses of Musa genomic sequence have been conducted. This study compares genomic sequence in two Musa species with orthologous regions in the rice genome.We produced 1.4 Mb of Musa sequence from 13 BAC clones, annotated and analyzed them along with 4 previously sequenced BACs. The 443 predicted genes revealed that Zingiberales genes share GC content and distribution characteristics with eudicot and Poaceae genomes. Comparison with rice revealed microsynteny regions that have persisted since the divergence of the Commelinid orders Poales and Zingiberales at least 117 Mya. The previously hypothesized large-scale duplication event in the common ancestor of major cereal lineages within the Poaceae was verified. The divergence time distributions for Musa-Zingiber (Zingiberaceae, Zingiberales) orthologs and paralogs provide strong evidence for a large-scale duplication event in the Musa lineage after its divergence from the Zingiberaceae approximately 61 Mya. Comparisons of genomic regions from M. acuminata and M. balbisiana revealed highly conserved genome structure, and indicated that these genomes diverged circa 4.6 Mya. These results point to the utility of comparative analyses between distantly-related monocot species such as rice and Musa for improving our understanding of monocot genome evolution. Sequencing the genome of M. acuminata would provide a strong foundation for comparative genomics in the monocots. In addition a genome sequence would aid genomic and genetic analyses of cultivated Musa polyploid genotypes in research aimed at localizing and cloning genes controlling important agronomic traits for breeding purposes. MenosMusa species (Zingiberaceae, Zingiberales) including bananas and plantains are collectively the fourth most important crop in developing countries. Knowledge concerning Musa genome structure and the origin of distinct cultivars has greatly increased over the last few years. Until now, however, no large-scale analyses of Musa genomic sequence have been conducted. This study compares genomic sequence in two Musa species with orthologous regions in the rice genome.We produced 1.4 Mb of Musa sequence from 13 BAC clones, annotated and analyzed them along with 4 previously sequenced BACs. The 443 predicted genes revealed that Zingiberales genes share GC content and distribution characteristics with eudicot and Poaceae genomes. Comparison with rice revealed microsynteny regions that have persisted since the divergence of the Commelinid orders Poales and Zingiberales at least 117 Mya. The previously hypothesized large-scale duplication event in the common ancestor of major cereal lineages within the Poaceae was verified. The divergence time distributions for Musa-Zingiber (Zingiberaceae, Zingiberales) orthologs and paralogs provide strong evidence for a large-scale duplication event in the Musa lineage after its divergence from the Zingiberaceae approximately 61 Mya. Comparisons of genomic regions from M. acuminata and M. balbisiana revealed highly conserved genome structure, and indicated that these genomes diverged circa 4.6 Mya. These results point to the utility of comparative a... Mostrar Tudo |
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Palavras-Chave: |
Species. |
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Categoria do assunto: |
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Marc: |
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245 $aInsights into the Musa genome$bsyntenic relationships to rice and between Musa species.$h[electronic resource]
260 $c2007
300 $cil.
520 $aMusa species (Zingiberaceae, Zingiberales) including bananas and plantains are collectively the fourth most important crop in developing countries. Knowledge concerning Musa genome structure and the origin of distinct cultivars has greatly increased over the last few years. Until now, however, no large-scale analyses of Musa genomic sequence have been conducted. This study compares genomic sequence in two Musa species with orthologous regions in the rice genome.We produced 1.4 Mb of Musa sequence from 13 BAC clones, annotated and analyzed them along with 4 previously sequenced BACs. The 443 predicted genes revealed that Zingiberales genes share GC content and distribution characteristics with eudicot and Poaceae genomes. Comparison with rice revealed microsynteny regions that have persisted since the divergence of the Commelinid orders Poales and Zingiberales at least 117 Mya. The previously hypothesized large-scale duplication event in the common ancestor of major cereal lineages within the Poaceae was verified. The divergence time distributions for Musa-Zingiber (Zingiberaceae, Zingiberales) orthologs and paralogs provide strong evidence for a large-scale duplication event in the Musa lineage after its divergence from the Zingiberaceae approximately 61 Mya. Comparisons of genomic regions from M. acuminata and M. balbisiana revealed highly conserved genome structure, and indicated that these genomes diverged circa 4.6 Mya. These results point to the utility of comparative analyses between distantly-related monocot species such as rice and Musa for improving our understanding of monocot genome evolution. Sequencing the genome of M. acuminata would provide a strong foundation for comparative genomics in the monocots. In addition a genome sequence would aid genomic and genetic analyses of cultivated Musa polyploid genotypes in research aimed at localizing and cloning genes controlling important agronomic traits for breeding purposes.
653 $aSpecies
700 1 $aPIFFANELLI, P.
700 1 $aCIAMPI, A. Y.
700 1 $aRUIZ, M.
700 1 $aBLANC, G.
700 1 $aLEEBENS-MACK, J.
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700 1 $aSANTOS, C. M. R.
700 1 $aD'HONT, A.
700 1 $aGARSMEUR, O.
700 1 $aVILARINHOS, A. D.
700 1 $aKANAMORI, H.
700 1 $aMATSUMOTO, T.
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700 1 $aALTHOFF, R.
700 1 $aARBOGAST, T.
700 1 $aHIRE, E.
700 1 $aPAPPAS JUNIOR, G.
700 1 $aSASAKI, T.
700 1 $aSOUZA JUNIOR, M. T.
700 1 $aMILLER, R. N. G.
700 1 $aGLASZMANN, J. C.
700 1 $aTOWN, C. D.
773 $tBMC Genomics, London$gv. 9, 2007.
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Registro original: |
Embrapa Mandioca e Fruticultura (CNPMF) |
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| Registros recuperados : 20 | |
| 10. |  | HASHIMOTO, G. S. de O.; MARINHO NETO, F.; RUIZ, M. L.; ACCHILE, M.; CHAGAS, E. C.; CHAVES, F. C. M.; MARTINS, M. L. Essential oils of Lippia sidoides and Mentha piperita against monogenean parasites and their influence on the hematology of Nile tilapia. Aquaculture, v. 450, p. 182-186, 2016.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 2 |
| Biblioteca(s): Embrapa Amazônia Ocidental. |
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| 11. | | CORRÊA, A. S.; ARRUDA, Z. J. de; CORREA, E. S.; KESSLER, R. H.; FIGUEIREDO, G. R. de; RUIZ, M. E.; CARVALHO, E. G. de. O sistema físico de produção de gado de corte, implantado na Fazenda Modelo - CNPGC. Campo Grande, MS: EMBRAPA, CNPGC, 1985. 23 p. CNPGC.| Biblioteca(s): Embrapa Gado de Corte. |
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| 12. | | CORRÊA, A. S.; ARRUDA, Z. J. de; CORRÊA, E. S.; KESSLER, R. H.; FIGUEIREDO, G. R. de; RUIZ, M. E.; CARVALHO, E. G. de. O sistema de produção de gado de corte, implantado no CNPGC. Campo Grande, MS : EMBRAPA-CNPGC, 1985. 31 p. (EMBRAPA-CNPGC. Documentos, 32).| Biblioteca(s): Embrapa Gado de Corte. |
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| 13. | | CORRÊA, A. S.; ARRUDA, Z. J. de; CORRÊA, E. S.; KESSLER, R. H.; FIGUEIREDO, G. R. de; RUIZ, M. E.; CARVALHO, E. G. de. O sistema de produção de gado de corte implantado no CNPGC. 2. ed. Campo Grande, MS: EMBRAPA-CNPGC, 1988. 38 p. (EMBRAPA-CNPGC. Documentos, 32).| Biblioteca(s): Embrapa Gado de Corte. |
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| 14. | | CORRÊA, A. S.; ARRUDA, Z. J. de; CORRÊA, E. S.; KESSLER, R. H.; FIGUEIREDO, G. R. de; RUIZ, M. E.; CARVALHO, E. G. de. O sistema de produção de gado de corte implantado no CNPGC. 2. ed. Campo Grande, MS : EMBRAPA-CNPGC, 1991. 38 p. (EMBRAPA-CNPGC. Documentos, 32).| Biblioteca(s): Embrapa Gado de Corte. |
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| 15. | | PIFFANELLI, P.; CIAMPI, A.; RUIZ, M.; SILVA, F. R. da; LESCOT, M.; PAPAS, G.; RONNING, C.; HAAS, B.; WORTMAN, J.; FRISON, E.; ROUX, N.; MILLER, R. N. G.; COTE, F.; D'HONT, A.; SOUZA, M.; GLASZMANN, J. C.; TOWN, C. Analysis of the Musa genome from BAC sequencing and its comparison with rice. In: INTERNATIONAL PLANT & ANIMAL GENOMES CONFERENCE, 13., 2005, San Diego, CA. [Proceedings...]. [S. l.: s.n.], 2005. Não paginado.| Biblioteca(s): Embrapa Recursos Genéticos e Biotecnologia. |
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| 16. | | LESCOT, M.; PIFFANELLI, P.; CIAMPI, A. Y.; RUIZ, M.; BLANC, G.; LEEBENS-MACK, J.; SILVA, F. R. da; SANTOS, C. M. R.; D'HONT, A.; GARSMEUR, O.; VILARINHOS, A. D.; KANAMORI, H.; MATSUMOTO, T.; RONNING, C. M.; CHEUNG, F.; HAAS, B. J.; ALTHOFF, R.; ARBOGAST, T.; HIRE, E.; PAPPAS JUNIOR, G.; SASAKI, T.; SOUZA JUNIOR, M. T.; MILLER, R. N. G.; GLASZMANN, J. C.; TOWN, C. D. Insights into the Musa genome: syntenic relationships to rice and between Musa species. BMC Genomics, London, v. 9, 2007. il.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: Internacional - A |
| Biblioteca(s): Embrapa Mandioca e Fruticultura. |
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| 17. | | LESCOT, M.; PIFFANELLI, P.; CIAMPI, A. Y.; RUIZ, M.; BLANC, G.; LEEBENS MACK, J.; SILVA, F. R. da; SANTOS, C. M. R.; D'HONT, A.; GARSMEUR, O.; VILARINHOS, A. D.; KANAMORI, H.; MATSUMOTO, T.; RONNING, C. M.; CHEUNG, F.; HAAS, B. J.; ALTHOFF, R.; ARBOGAST, T.; HIRE, E.; PAPPAS JUNIOR, G.; SASAKI, T.; SOUZA JUNIOR, M. T.; MILLER, R. N. G.; GLASZMANN, J. C.; TOWN, C. D. Insights into the Musa genome: syntenic relationships to rice and between Musa species. BMC Genomics, London, v.9, n.58, 2008.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: Internacional - A |
| Biblioteca(s): Embrapa Recursos Genéticos e Biotecnologia. |
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| 18. | | D'HONT, A.; DENOEUD, F.; AURY, J. M.; BAURENS, F. C.; CARREEL, F.; GARSMEUR, O.; NOEL, B.; BOCS, S.; DROC, G.; ROUARD, M.; SILVA, C. da; JABBARI, K.; CARDI, C.; POULAIN, J.; SOUQUET, M.; LABADIE, K.; JOURDA, C.; LENGELLÉ. J.; RODIER-GOUD, M.; ALBERTI, A.; BERNARD, M.; CORREA, M.; AYYAMPALAYAM, S.; MCKAIN, M. R.; LEEBENS-MACK, J.; BURGESS, D.; FREELING, M.; MBÉGUIÉ-A-MBÉGUIÉ, D.; CHABANNES, M.; WICKER, T.; PANAUD, O.; BARBOSA, J.; HRIBOVA, E.; HESLOP-HARRISON, P.; HABAS, R.; RIVALLAN, R.; FRANCOIS, P.; POIRON, C.; KILIAN, A.; BURTHIA, D.; JENNY, C.; BAKRY, F.; BROWN, S.; GUIGNON, V.; KEMA, G.; RODRIGUEZ, M. A. D.; WAALWIJK, C.; JOSEPH, S.; DIEVART, A.; JAILLON, O.; LECLERCQ, J.; ARGOUT, X.; LYONS, E.; ALMEIDA, A.; JERIDI, M.; DOLEZEL, J.; ROUX, N.; RISTERUCCI, A. M.; WEISSENBACH, J.; RUIZ, M.; GLASZMANN, J. C.; QUÉTIER, F.; YAHIAOUI, N.; WINCKER, P. The banana (Musa acuminata) genome and the evolution of monocotyledonous plants. Nature, v. 488, August, 2012.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
| Biblioteca(s): Embrapa Mandioca e Fruticultura. |
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| 19. | | BRUSKIEWICH, R.; SENGER, M.; DAVENPORT, G.; RUIZ, M.; ROUARD, M.; HAZEKAMP, T.; TAKEYA, M.; DOI, K.; SATOH, K.; COSTA, M.; SIMON, R.; BALAJI, J.; AKINTUNDE, A.; MAULEON, R.; WANCHANA, S.; SHAH, T.; ANACLETO, M.; PORTUGAL, A.; ULAT, V. J.; THONGJUEA, S.; BRAAK, K.; RITTER, S.; DEREEPER, M.; SKOFIC, M.; ROJAS, E.; MARTINS, N.; PAPPAS, G.; ALAMBAN, R.; ALMODIEL, R.; BARBOZA, L. H.; DETRAS, J.; MANANSALA, K.; MENDOZA, M. J.; MORALES, J.; PERALTA, B.; VALERIO, R.; ZHANG, Y.; GREGORIO, S.; HERMOCILLA, J.; ECHAVEZ, M.; YAP, J. M.; FARMER, A.; SCHILTZ, G.; LEE, J.; CASSTEVENS, T.; JAISWAL, P.; MEINTJES, A.; WILKINSON, M.; GOOD, B.; WAGNER, J.; MORRIS, J.; MARSHALL, D.; COLLINS, A.; KIKUCHI, S.; METZ, T.; MCLAREN, G.; HINTUM, T. van. The generation challenge programme platform: semantic standards and workbench for crop science. International Journal of Plant Genomics, v.2008, 6 p., 2008. doi:10.1155/2008/369601.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: Nacional - B |
| Biblioteca(s): Embrapa Recursos Genéticos e Biotecnologia. |
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| 20. | | WU, A.; PROCHNIK, S.; JENKINS, J.; SALSE, J.; HELLSTEN, U.; MURAT, F.; PERRIER, X.; RUIZ, M.; SCALABRIN, S.; TEROL, J.; TAKITA, M. A.; LABADIE, K.; POULAIN, J.; COULOUX, A.; JABBARI, K.; CATTONARO, F.; DEL FABBRO, C.; PINOSIO, S.; ZUCCOLO, A.; CHAPMAN, J.; GRIMWOOD, J.; TADEO, F. O R.; ESTORNELL, L. H.; MUÑOZ-SANZ, J. V.; IBANEZ, V.; HERRERO-ORTEGA, A.; ALEZA, P.; PÉREZ-PÉREZ, J.; RAMÓN, D.; BRUNEL, D.; LUROM, F.; CHEN, C.; FARMERIE, W. G.; DESANY, B.; KODIRA, C.; MOHIUDDIN, M.; HARKINS, T.; FREDRIKSON, K.; BURNS, P.; LOMSADZE, A.; BORODOVSKY, M.; REFORGIATO, G.; ASTUA, J. de F.; QUETIER, F.; NAVARRO, L.; ROOSE, M.; WINCKER, P.; SCHMUTZ, J.; MORGANTE, M.; MARCOS ANTONIO MACHADO; MANUEL TALON. Sequencing of diverse mandarin, pummelo and orange genomes reveals complex history of admixture during citrus domestication. Nature biotechnology, n. 7,v. 32, July, 2014.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
| Biblioteca(s): Embrapa Mandioca e Fruticultura. |
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| Registros recuperados : 20 | |
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