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Registro Completo |
Biblioteca(s): |
Embrapa Clima Temperado. |
Data corrente: |
21/01/2010 |
Data da última atualização: |
13/10/2011 |
Autoria: |
CUNHA, G. da C.; ROMÃO, L. P. C.; SANTOS, M. C.; ARAÚJO, B. R. |
Título: |
Humina: um adsorvente alternativo na remoção de trihalometanos nos sistemas aquáticos. |
Ano de publicação: |
2009 |
Fonte/Imprenta: |
In: ENCONTRO BRASILEIRO DE SUBSTÂNCIAS HÚMICAS, 8., 2009. Pelotas. Resumos... Pelotas: Embrapa Clima Temperado, 2009. p. 79. |
ISBN: |
987-85-85941-40-6 |
Idioma: |
Português |
Categoria do assunto: |
-- |
Marc: |
LEADER 00552naa a2200157 a 4500 001 1747308 005 2011-10-13 008 2009 bl uuuu u00u1 u #d 020 $a987-85-85941-40-6 100 1 $aCUNHA, G. da C. 245 $aHumina$bum adsorvente alternativo na remoção de trihalometanos nos sistemas aquáticos. 260 $c2009 700 1 $aROMÃO, L. P. C. 700 1 $aSANTOS, M. C. 700 1 $aARAÚJO, B. R. 773 $tIn: ENCONTRO BRASILEIRO DE SUBSTÂNCIAS HÚMICAS, 8., 2009. Pelotas. Resumos... Pelotas: Embrapa Clima Temperado, 2009. p. 79.
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Registro Completo
Biblioteca(s): |
Embrapa Arroz e Feijão. |
Data corrente: |
03/03/2017 |
Data da última atualização: |
04/10/2021 |
Tipo da produção científica: |
Artigo em Periódico Indexado |
Circulação/Nível: |
B - 1 |
Autoria: |
VALDISSER, P. A. M. R.; PAPPAS JUNIOR, G. J.; MENEZES, I. P. P. de; MÜLLER, B. S. F.; PEREIRA, W. J.; NARCISO, M. G.; BRONDANI, C.; SOUZA, T. L. P. O.; BORBA, T. C. O.; VIANELLO, R. P. |
Afiliação: |
PAULA ARIELLE M RIBEIRO VALDISSER, CNPAF; GEORGIOS J. PAPPAS JUNIOR, UNB; IVANDILSON P. P. DE MENEZES, INSTITUTO FEDERAL GOIANO, Urutaí-GO; BARBARA S. F. MULLER, UNB; WENDELL J. PEREIRA, UFG; MARCELO GONCALVES NARCISO, CNPAF; CLAUDIO BRONDANI, CNPAF; THIAGO LIVIO PESSOA OLIV DE SOUZA, CNPAF; TEREZA CRISTINA DE OLIVEIRA BORBA, CNPAF; ROSANA PEREIRA VIANELLO, CNPAF. |
Título: |
SNP discovery in common bean by restriction-associated DNA (RAD) sequencing for genetic diversity and population structure analysis. |
Ano de publicação: |
2016 |
Fonte/Imprenta: |
Molecular Genetics and Genomics, v. 291, n. 3, p. 1277-1291, June 2016. |
ISSN: |
1617-4623 |
DOI: |
10.1007/s00438-016-1182-3 |
Idioma: |
Inglês |
Conteúdo: |
Researchers have made great advances into the development and application of genomic approaches for common beans, creating opportunities to driving more real and applicable strategies for sustainable management of the genetic resource towards plant breeding. This work provides useful polymorphic single-nucleotide polymorphisms (SNPs) for high-throughput common bean genotyping developed by RAD (restriction site-associated DNA) sequencing. The RAD tags were generated from DNA pooled from 12 common bean genotypes, including breeding lines of different gene pools and market classes. The aligned sequences identified 23,748 putative RAD-SNPs, of which 3357 were adequate for genotyping; 1032 RADSNPs with the highest ADT (assay design tool) score are presented in this article. The RAD-SNPs were structurally annotated in different coding (47.00 %) and non-coding (53.00 %) sequence components of genes. A subset of 384 RAD-SNPs with broad genome distribution was used to genotype a diverse panel of 95 common bean germplasms and revealed a successful amplification rate of 96.6 %, showing 73 % of polymorphic SNPs within the Andean group and 83 % in the Mesoamerican group. A slightly increased He (0.161, n = 21) value was estimated for the Andean gene pool, compared to the Mesoamerican group (0.156, n = 74). For the linkage disequilibrium (LD) analysis, from a group of 580 SNPs (289 RAD-SNPs and 291 BARC-SNPs) genotyped for the same set of genotypes, 70.2 % were in LD, decreasing to 0.10 %in the Andean group and 0.77 % in the Mesoamerican group. Haplotype patterns spanning 310 Mb of the genome (60 %) were characterized in samples from different origins. However, the haplotype frameworks were under-represented for the Andean (7.85 %) and Mesoamerican (5.55 %) gene pools separately. In conclusion, RAD sequencing allowed the discovery of hundreds of useful SNPs for broad genetic analysis of common bean germplasm. From now, this approach provides an excellent panel of molecular tools for whole genome analysis, allowing integrating and better exploring the common bean breeding practices. MenosResearchers have made great advances into the development and application of genomic approaches for common beans, creating opportunities to driving more real and applicable strategies for sustainable management of the genetic resource towards plant breeding. This work provides useful polymorphic single-nucleotide polymorphisms (SNPs) for high-throughput common bean genotyping developed by RAD (restriction site-associated DNA) sequencing. The RAD tags were generated from DNA pooled from 12 common bean genotypes, including breeding lines of different gene pools and market classes. The aligned sequences identified 23,748 putative RAD-SNPs, of which 3357 were adequate for genotyping; 1032 RADSNPs with the highest ADT (assay design tool) score are presented in this article. The RAD-SNPs were structurally annotated in different coding (47.00 %) and non-coding (53.00 %) sequence components of genes. A subset of 384 RAD-SNPs with broad genome distribution was used to genotype a diverse panel of 95 common bean germplasms and revealed a successful amplification rate of 96.6 %, showing 73 % of polymorphic SNPs within the Andean group and 83 % in the Mesoamerican group. A slightly increased He (0.161, n = 21) value was estimated for the Andean gene pool, compared to the Mesoamerican group (0.156, n = 74). For the linkage disequilibrium (LD) analysis, from a group of 580 SNPs (289 RAD-SNPs and 291 BARC-SNPs) genotyped for the same set of genotypes, 70.2 % were in LD, decreasing to 0.10 %... Mostrar Tudo |
Thesagro: |
DNA; Feijão; Phaseolus vulgaris. |
Thesaurus NAL: |
Beans; Fabaceae; Genetic variation; Haplotypes; Linkage disequilibrium; Single nucleotide polymorphism. |
Categoria do assunto: |
S Ciências Biológicas |
Marc: |
LEADER 03207naa a2200361 a 4500 001 2066055 005 2021-10-04 008 2016 bl uuuu u00u1 u #d 022 $a1617-4623 024 7 $a10.1007/s00438-016-1182-3$2DOI 100 1 $aVALDISSER, P. A. M. R. 245 $aSNP discovery in common bean by restriction-associated DNA (RAD) sequencing for genetic diversity and population structure analysis.$h[electronic resource] 260 $c2016 520 $aResearchers have made great advances into the development and application of genomic approaches for common beans, creating opportunities to driving more real and applicable strategies for sustainable management of the genetic resource towards plant breeding. This work provides useful polymorphic single-nucleotide polymorphisms (SNPs) for high-throughput common bean genotyping developed by RAD (restriction site-associated DNA) sequencing. The RAD tags were generated from DNA pooled from 12 common bean genotypes, including breeding lines of different gene pools and market classes. The aligned sequences identified 23,748 putative RAD-SNPs, of which 3357 were adequate for genotyping; 1032 RADSNPs with the highest ADT (assay design tool) score are presented in this article. The RAD-SNPs were structurally annotated in different coding (47.00 %) and non-coding (53.00 %) sequence components of genes. A subset of 384 RAD-SNPs with broad genome distribution was used to genotype a diverse panel of 95 common bean germplasms and revealed a successful amplification rate of 96.6 %, showing 73 % of polymorphic SNPs within the Andean group and 83 % in the Mesoamerican group. A slightly increased He (0.161, n = 21) value was estimated for the Andean gene pool, compared to the Mesoamerican group (0.156, n = 74). For the linkage disequilibrium (LD) analysis, from a group of 580 SNPs (289 RAD-SNPs and 291 BARC-SNPs) genotyped for the same set of genotypes, 70.2 % were in LD, decreasing to 0.10 %in the Andean group and 0.77 % in the Mesoamerican group. Haplotype patterns spanning 310 Mb of the genome (60 %) were characterized in samples from different origins. However, the haplotype frameworks were under-represented for the Andean (7.85 %) and Mesoamerican (5.55 %) gene pools separately. In conclusion, RAD sequencing allowed the discovery of hundreds of useful SNPs for broad genetic analysis of common bean germplasm. From now, this approach provides an excellent panel of molecular tools for whole genome analysis, allowing integrating and better exploring the common bean breeding practices. 650 $aBeans 650 $aFabaceae 650 $aGenetic variation 650 $aHaplotypes 650 $aLinkage disequilibrium 650 $aSingle nucleotide polymorphism 650 $aDNA 650 $aFeijão 650 $aPhaseolus vulgaris 700 1 $aPAPPAS JUNIOR, G. J. 700 1 $aMENEZES, I. P. P. de 700 1 $aMÜLLER, B. S. F. 700 1 $aPEREIRA, W. J. 700 1 $aNARCISO, M. G. 700 1 $aBRONDANI, C. 700 1 $aSOUZA, T. L. P. O. 700 1 $aBORBA, T. C. O. 700 1 $aVIANELLO, R. P. 773 $tMolecular Genetics and Genomics$gv. 291, n. 3, p. 1277-1291, June 2016.
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