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Registro Completo |
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Biblioteca(s): |
Embrapa Agroenergia; Embrapa Soja. |
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Data corrente: |
02/10/2015 |
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Data da última atualização: |
13/11/2017 |
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Tipo da produção científica: |
Artigo em Periódico Indexado |
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Autoria: |
MARCOLINO-GOMES, J.; RODRIGUES, F. A.; FUGANTI-PAGLIARINI, R.; NAKAYAMA, T. J.; REIS, R. R.; FARIAS, J. R. B.; HARMON, F. G.; MOLINARI, H. B. C.; MOLINARI, M. D. C.; NEPOMUCENO, A. L. |
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Afiliação: |
UEL; AUTOR; AUTOR; UFV; UEL; JOSE RENATO BOUCAS FARIAS, CNPSO; U C BERKELEY - BERKELEY; HUGO BRUNO CORREA MOLINARI, CNPAE; UEL; ALEXANDRE LIMA NEPOMUCENO, CNPSO. |
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Título: |
Transcriptome-wide identification of reference genes for expression analysis of soybean responses to drought stress along the day. |
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Ano de publicação: |
2015 |
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Fonte/Imprenta: |
Plos One, v. 10, n. 9, e0139051, 2015. |
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Páginas: |
16 p. |
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DOI: |
10.1371/journal.pone.0139051 |
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Idioma: |
Inglês |
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Conteúdo: |
The soybean transcriptome displays strong variation along the day in optimal growth conditions and also in response to adverse circumstances, like drought stress. However, no study conducted to date has presented suitable reference genes, with stable expression along the day, for relative gene expression quantification in combined studies on drought stress and diurnal oscillations. Recently, water deficit responses have been associated with circadian clock oscillations at the transcription level, revealing the existence of hitherto unknown processes and increasing the demand for studies on plant responses to drought stress and its oscillation during the day. We performed data mining from a transcriptomewide background using microarrays and RNA-seq databases to select an unpublished set of candidate reference genes, specifically chosen for the normalization of gene expression in studies on soybean under both drought stress and diurnal oscillations. Experimental validation and stability analysis in soybean plants submitted to drought stress and sampled during a 24 h timecourse showed that four of these newer reference genes (FYVE, NUDIX, Golgin-84 and CYST) indeed exhibited greater expression stability than the conventionally used housekeeping genes (ELF1-β and β-actin) under these conditions. We also demonstrated the effect of using reference candidate genes with different stability values to normalize the relative expression data from a drought-inducible soybean gene (DREB5) evaluated in different periods of the day. MenosThe soybean transcriptome displays strong variation along the day in optimal growth conditions and also in response to adverse circumstances, like drought stress. However, no study conducted to date has presented suitable reference genes, with stable expression along the day, for relative gene expression quantification in combined studies on drought stress and diurnal oscillations. Recently, water deficit responses have been associated with circadian clock oscillations at the transcription level, revealing the existence of hitherto unknown processes and increasing the demand for studies on plant responses to drought stress and its oscillation during the day. We performed data mining from a transcriptomewide background using microarrays and RNA-seq databases to select an unpublished set of candidate reference genes, specifically chosen for the normalization of gene expression in studies on soybean under both drought stress and diurnal oscillations. Experimental validation and stability analysis in soybean plants submitted to drought stress and sampled during a 24 h timecourse showed that four of these newer reference genes (FYVE, NUDIX, Golgin-84 and CYST) indeed exhibited greater expression stability than the conventionally used housekeeping genes (ELF1-β and β-actin) under these conditions. We also demonstrated the effect of using reference candidate genes with different stability values to normalize the relative expression data from a drought-inducible soybean ge... Mostrar Tudo |
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Palavras-Chave: |
Drought stress; Soybean. |
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Thesagro: |
Estiagem; Resistência à seca; Seca; Soja. |
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Thesaurus Nal: |
Drought tolerance; Soybeans; Transcriptome. |
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Categoria do assunto: |
--
F Plantas e Produtos de Origem Vegetal |
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URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/item/166647/1/nepomuceno-plos-one.pdf
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Marc: |
LEADER 02592naa a2200361 a 4500
001 2079599
005 2017-11-13
008 2015 bl uuuu u00u1 u #d
024 7 $a10.1371/journal.pone.0139051$2DOI
100 1 $aMARCOLINO-GOMES, J.
245 $aTranscriptome-wide identification of reference genes for expression analysis of soybean responses to drought stress along the day.$h[electronic resource]
260 $c2015
300 $a16 p.
520 $aThe soybean transcriptome displays strong variation along the day in optimal growth conditions and also in response to adverse circumstances, like drought stress. However, no study conducted to date has presented suitable reference genes, with stable expression along the day, for relative gene expression quantification in combined studies on drought stress and diurnal oscillations. Recently, water deficit responses have been associated with circadian clock oscillations at the transcription level, revealing the existence of hitherto unknown processes and increasing the demand for studies on plant responses to drought stress and its oscillation during the day. We performed data mining from a transcriptomewide background using microarrays and RNA-seq databases to select an unpublished set of candidate reference genes, specifically chosen for the normalization of gene expression in studies on soybean under both drought stress and diurnal oscillations. Experimental validation and stability analysis in soybean plants submitted to drought stress and sampled during a 24 h timecourse showed that four of these newer reference genes (FYVE, NUDIX, Golgin-84 and CYST) indeed exhibited greater expression stability than the conventionally used housekeeping genes (ELF1-β and β-actin) under these conditions. We also demonstrated the effect of using reference candidate genes with different stability values to normalize the relative expression data from a drought-inducible soybean gene (DREB5) evaluated in different periods of the day.
650 $aDrought tolerance
650 $aSoybeans
650 $aTranscriptome
650 $aEstiagem
650 $aResistência à seca
650 $aSeca
650 $aSoja
653 $aDrought stress
653 $aSoybean
700 1 $aRODRIGUES, F. A.
700 1 $aFUGANTI-PAGLIARINI, R.
700 1 $aNAKAYAMA, T. J.
700 1 $aREIS, R. R.
700 1 $aFARIAS, J. R. B.
700 1 $aHARMON, F. G.
700 1 $aMOLINARI, H. B. C.
700 1 $aMOLINARI, M. D. C.
700 1 $aNEPOMUCENO, A. L.
773 $tPlos One$gv. 10, n. 9, e0139051, 2015.
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Esconder MarcMostrar Marc Completo |
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Registro original: |
Embrapa Soja (CNPSO) |
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Biblioteca |
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Origem |
Tipo/Formato |
Classificação |
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Registro |
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| Registros recuperados : 113 | |
| 101. |  | MARINHO, J. P.; KANAMORI, N.; FERREIRA, L. C.; FUGANTI-PAGLIARINI, R.; CARVALHO, J. de F. C.; FREITAS, R. A.; MARIN, S. R. R.; RODRIGUES, F. A.; MERTZ-HENNING, L. M.; FARIAS, J. R. B.; NEUMAIER, N.; OLIVEIRA, M. C. N. de; MARCELINO-GUIMARÃES, F. C.; YOSHIDA, T.; FUJITA, Y.; YAMAGUCHI-SHINOZAKI, K.; NAKASHIMA, K.; NEPOMUCENO, A. L. Characterization of molecular and physiological responses under water deficit of genetically modified soybean plants overexpressing the ATAREB1 transcription fator. Plant Molecular Biology Reporter, v. 34, n. 2, p. 410-426, 2016.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 2 |
| Biblioteca(s): Embrapa Soja. |
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| 102. | | FUGANTI-PAGLIARINI, R; FERREIRA, L. C.; RODRIGUES, F. A.; MOLINARI, H. B. C.; MARIN, S. R. R.; MOLINARI, M. D. C.; MARCOLINO-GOMES, J.; MERTZ-HENNING, L. M.; FARIAS, J. R. B.; OLIVEIRA, M. C. N. de; NEUMAIER, N.; KANAMORI, N.; FUJITA, Y.; MIZOI, J.; NAKASHIMA, K.; YAMAGUCHI-SHINOZAKI, K.; NEPOMUCENO, A. L. Characterization of soybean genetically modified for drought tolerance in field conditions. Frontiers in Plant Science, v. 8, artigo 448, 2017.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
| Biblioteca(s): Embrapa Agroenergia; Embrapa Soja. |
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| 103. | | GUIMARÃES-DIAS, F.; NEVES-BORGES, A. C.; CONFORTE, A. J.; GIOVANELLA-KAMPMANN, L.; FERREIRA, A. V. J.; AMORIM, R. M. S.; BENEVENT, M. A.; SÁ, M. E. L. de; MESQUITA, R. O.; RODRIGUES, F. A.; NEPOMUCENO, A. L.; ROMANO, E.; LOUREIRO, M. E.; GROSSI-DE-SA, M. F.; ALVES-FERREIRA, M. Differential impact of acclimation and acute water deprivation in the expression of key transcription factors in soybean roots. Plant Molecular Biology Reporter, v. 34, p. 1167-1180, 2016.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 2 |
| Biblioteca(s): Embrapa Recursos Genéticos e Biotecnologia; Embrapa Soja. |
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| 104. | | PEREIRA, W. J.; MELO, A. T. de O.; COELHO, A. S. G.; RODRIGUES, F. A.; MAMIDI, S.; ALENCAR, S. A. de; LANNA, A. C.; VALDISSER, P. A. M. R.; BRONDANI, C.; NASCIMENTO JUNIOR, I. R. do; BORBA, T. C. de O.; VIANELLO, R. P. Genome-wide analysis of the transcriptional response to drought stress in root and leaf of common bean. Genetics and Molecular Biology, v. 43, n. 1, e20180259, 2020.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
| Biblioteca(s): Embrapa Arroz e Feijão. |
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| 105. | | ENGELS, C.; KANAMORI, N.; FUGANTI, R.; RODRIGUES, F. A.; GIROTTO, L.; LEITE, J. P.; ROLLA, A. A. P.; MARIN, S. R. R.; SILVEIRA, C. A. da; FARIAS, J. R. B.; NEVES de OLIVEIRA, M. C.; NEUMAIER, N.; ABDELNOOR, R. V.; MARCELINO, F. C.; YAMAGUCHI-SHINOZAKI, K.; NEPOMUCENO, A. L. Improving abiotic stress tolerance in soybean the introduction of rd29A:AtDREB2A construct. In: INTERNATIONAL CONFERENCE ON INTEGRATED APPROACHES TO IMPROVE CROP PRODUCTION UNDER DROUGHT-PRONE ENVIRONMENTS, 3., 2009, Shangai. Abstracts... Shangai: Shangai Academy of Agricultural Sciences: Shangai Agrobiological Gene Center, 2009. p. 220, ref. P 7.07. INTERDROUGHT 2009.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Soja. |
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| 106. | | CAVALCANTI, B. C.; FERREIRA, J. R. O.; CABRAL, I. O.; MAGALHÃES, H. I. F.; OLIVEIRA, C. C. de; RODRIGUES, F. A. R.; ROCHA, D. D.; BARROS, F. W. A.; SILVA, C. R. da; CANUTO, K. M.; SILVEIRA, E. R.; PESSOA, C.; MORAES, M. O. Genetic toxicology evaluation of essential oil of Alpinia zerumbet and its chemoprotective effects against H² O²-induced DNA damage in cultured human leukocytes. Food and Chemical Toxicology v.50, p.4051-4061, 2012.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 2 |
| Biblioteca(s): Embrapa Agroindústria Tropical. |
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| 107. | | KULCHESKI, F. R.; OLIVEIRA, L. F. V.; MOLINA, L. G.; ALMERAO, M. P.; RODRIGUES, F. A.; MARCOLINO, J.; BARBOSA, J. F.; STOLF-MOREIRA, R.; NEPOMUCENO, A. L.; MARCELINO-GUIMARÃES, F. C.; ABDELNOOR, R. V.; NASCIMENTO, L. C.; CARAZZOLLE, M. F.; PEREIRA, G. A. G.; MARGIS, R. Identification of novel soybean microRNAs involved in abiotic and biotic stresses. BMC Genomics, v. 12, n. 307, jun. 2011. 17 p.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
| Biblioteca(s): Embrapa Soja. |
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| 108. | | KULCHESKI, F. R.; OLIVEIRA, L. F. V.; MOLINA, L. G.; ALMERÃO, M.; RODRIGUES, F. A.; MARCOLINO, J.; BARBOSA, J. F.; STOLF-MOREIRA, R.; NEPOMUCENO, A. L.; MARCELINO, F. C.; ABDELNOOR, R. V.; NASCIMENTO, L. C.; CARAZZOLLE, M. F.; PEREIRA, G. A. G.; MARGIS, R. Identification of novel soybean microRNAs involved in abiotic and biotic stresses. In: BRAZILIAN SYMPOSIUM ON PLANT MOLECULAR BIOLOGY, 3., 2011, Ilhéus. [Abstracts...]. [Ribeirão Preto]: SBG, 2011. 1 p. 1 CD-ROM.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Soja. |
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| 109. | | NAKAYAMA, T. J.; RODRIGUES, F. A.; NEUMAIER, N.; GOMES, J. M.; MOLINARI, H. B. C.; SANTIAGO, T. R.; FORMIGHIERI, E. F.; BASSO, M. F.; FARIAS, J. R. B.; EMYGDIO, B. M.; OLIVEIRA, A. C. B. de; CAMPOS, A. D.; BORÉM, A.; HARMON, F. G.; MERTZ-HENNING, L. M.; NEPOMUCENO, A. L. Insights into soybean transcriptome reconfiguration under hypoxic stress: Functional, regulatory, structural, and compositional characterization. PLoS ONE, v. 12, n. 11, e0187920, 2017.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
| Biblioteca(s): Embrapa Soja. |
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| 110. | | POLIZEL, A. M.; MEDRI, M. E.; NAKASHIMA, K.; YAMANAKA, N.; FARIAS, J. R. B.; OLIVEIRA, M. C. N. de; MARIN, S. R. R.; ABDELNOOR, R. V.; MARCELINO, F. C.; FUGANTI, R.; RODRIGUES, F. A.; STOLF-MOREIRA, R.; BENEVENTI, M. A.; ROLLA, A. A. P.; NEUMAIER, N.; YAMAGUCHI-SHINOZAKI, K.; CARVALHO, J. F. C.; NEPOMUCENO, A. L. Molecular, anatomical and physiological properties of a genetically modified soybean line transformed with rd29A:AtDREB1A for the improvement of drought tolerance. Genetics and Molecular Research, Ribeirão Preto, v. 10, n. 4, p. 3641-3656, 2011.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: B - 1 |
| Biblioteca(s): Embrapa Soja. |
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| 111. | | FUGANTI, R.; ENGELS, C.; RODRIGUES, F. A.; MARINHO, J. P.; LEITE, J. P.; GIROTTO, L.; MOLINARI, M. D. C.; KANAMORI, N.; MARIN, S. R. R.; FARIAS, J. R. B.; NEUMAIER, N.; OLIVEIRA, M. C. N. de; MARCELINO, F. C.; MIZOI, J.; YAMAGUCHI-SHINOZAKI, K.; NEPOMUCENO, A. L. Molecular characterization by qPCR of Soybean (Glycine max L. Merril) genetically modified lines expressing AtDREB2A gene, submitted to water stress treatments. In: CONGRESSO BRASILEIRO DE BIOTECNOLOGIA, 3., 2010, Fortaleza. Programa e resumos. Brasília, DF: SBBiotec, 2010. p. 188-189.| Tipo: Artigo em Anais de Congresso |
| Biblioteca(s): Embrapa Soja. |
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| 112. | | ENGELS, C.; FUGANTI, R.; RODRIGUES, F. A.; GIROTTO, L.; SANCHES B. B.; LEITE J. P.; ROLLA, A. A. P.; MARIN, S. R. R.; SILVEIRA, C. A.; FARIAS, J. R. B.; MARCELINO, F. C.; ABDELNOOR, R. V.; SHINOZAKI, K.; NEPOMUCENO, A. L. Obtenção e caracterização de plantas de soja (Glycine max) geneticamente modificadas visando maior tolerância à seca. In: CONGRESSO BRASILEIRO DE SOJA, 5.; MERCOSOJA 2009, Goiânia. Resumos... Londrina: Embrapa Soja, 2009. p.104, trab. 176. Editado por Adilson de Oliveira Júnior, Odilon Ferreira Saraiva, Clara Beatriz Hoffmann Campo, César de Castro.| Biblioteca(s): Embrapa Soja. |
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| 113. | | PEREIRA, W. J.; ABREU, F. R. M.; MELO, A. T. de O.; COELHO, A. S. G.; RODRIGUES, F. A.; MAMIDI, S.; ALENCAR, S. A. de; LANNA, A. C.; VALDISSER, P. A. M. R.; BRONDANI, C.; NASCIMENTO JUNIOR, I. R. do; BORBA, T. C. de O.; VIANELLO, R. P. Transcriptoma para seca revela novos genes para o germoplasma do feijão comum mesoamericano. In: CONGRESSO NACIONAL DE PESQUISA DE FEIJÃO, 12., 2017, Piracicaba. Produtividade e sustentabilidade da cultura do feijão: do campo para a mesa: resumos. Piracicaba: CENA: IAC, 2017. p. 32. CONAFE| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Arroz e Feijão. |
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| Registros recuperados : 113 | |
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| Nenhum registro encontrado para a expressão de busca informada. |
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