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Registro Completo |
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Biblioteca(s): |
Embrapa Café. |
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Data corrente: |
09/01/2023 |
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Data da última atualização: |
09/01/2023 |
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Tipo da produção científica: |
Artigo em Periódico Indexado |
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Autoria: |
ARIYOSHI, C.; SANT'ANA, G. C.; FELICIO, M. S.; SERA, G. H.; NOGUEIRA, L. M.; RODRIGUES, L. M. R.; FERREIRA, R. V.; SILVA, B. S. R. da; RESENDE, M. L. V. de; DESTÉFANO, S. A. L.; DOMINGUES, D. S.; PEREIRA, L. F. P. |
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Afiliação: |
CAROLINE ARIYOSHI, UNIVERSIDADE ESTADUAL DE LONDRINA; GUSTAVO CÉSAR SANT'ANA, TROPICAL MELHORAMENTO & GENÉTICA; MARIANE SILVA FELICIO, INSTITUTO DE DESENVOLVIMENTO RURAL DO PARANÁ; GUSTAVO HIROSHI SERA, INSTITUTO DE DESENVOLVIMENTO RURAL DO PARANÁ; LIVIA MARIA NOGUEIRA, UNIVERSIDADE ESTADUAL DE LONDRINA; LUCAS MATEUS RIVERO RODRIGUES, INSTITUTO AGRONÔMICO; RAFAELLE VECCHIA FERREIRA, UNIVERSIDADE ESTADUAL DE LONDRINA; BRUNA SILVESTRE RODRIGUES DA SILVA, UNIVERSIDADE ESTADUAL DE LONDRINA; MÁRIO LÚCIO VILELA DE RESENDE, UNIVERSIDADE FEDERAL DE LAVRAS; SUZETE APARECIDA LANZA DESTÉFANO, INSTITUTO BIOLÓGICO; DOUGLAS SILVA DOMINGUES, ESCOLA SUPERIOR DE AGRICULTURA LUIZ DE QUEIROZ; LUIZ FILIPE PROTASIO PEREIRA, CNPCa. |
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Título: |
Genome-wide association study for resistance to Pseudomonas syringae pv. garcae in Coffea arabica. |
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Ano de publicação: |
2022 |
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Fonte/Imprenta: |
Frontiers in Plant Science, v. 13, article 989847, 2022. |
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DOI: |
https://doi.org/10.3389/fpls.2022.989847 |
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Idioma: |
Inglês |
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Conteúdo: |
Bacteria halo blight (BHB), a coffee plant disease caused by Pseudomonas syringae pv. garcae, has been gaining importance in producing mountain regions and mild temperatures areas as well as in coffee nurseries. Most Coffea arabica cultivars are susceptible to this disease. In contrast, a great source of genetic diversity and resistance to BHB are found in C. arabica Ethiopian accessions. Aiming to identify quantitative trait nucleotides (QTNs) associated with resistance to BHB and the influence of these genomic regions during the domestication of C. arabica, we conducted an analysis of population structure and a Genome-Wide Association Study (GWAS). For this, we used genotyping by sequencing (GBS) and phenotyping for resistance to BHB of a panel with 120 C. arabica Ethiopian accessions from a historical FAO collection, 11 C. arabica cultivars, and the BA-10 genotype. Population structure analysis based on single-nucleotide polymorphisms (SNPs) markers showed that the 132 accessions are divided into 3 clusters: most wild Ethiopian accessions, domesticated Ethiopian accessions, and cultivars. GWAS, using the single-locus model MLM and the multi-locus models mrMLM, FASTmrMLM, FASTmrEMMA, and ISIS EM-BLASSO, identified 11 QTNs associated with resistance to BHB. Among these QTNs, the four with the highest values of association for resistance to BHB are linked to g000 (Chr_0_434_435) and g010741 genes, which are predicted to encode a serine/threonine-kinase protein and a nucleotide binding site leucine-rich repeat (NBS-LRR), respectively. These genes displayed a similar transcriptional downregulation profile in a C. arabica susceptible cultivar and in a C. arabica cultivar with quantitative resistance, when infected with P. syringae pv. garcae. However, peaks of upregulation were observed in a C. arabica cultivar with qualitative resistance, for both genes. Our results provide SNPs that have potential for application in Marker Assisted Selection (MAS) and expand our understanding about the complex genetic control of the resistance to BHB in C. arabica. In addition, the findings contribute to increasing understanding of the C. arabica domestication history. MenosBacteria halo blight (BHB), a coffee plant disease caused by Pseudomonas syringae pv. garcae, has been gaining importance in producing mountain regions and mild temperatures areas as well as in coffee nurseries. Most Coffea arabica cultivars are susceptible to this disease. In contrast, a great source of genetic diversity and resistance to BHB are found in C. arabica Ethiopian accessions. Aiming to identify quantitative trait nucleotides (QTNs) associated with resistance to BHB and the influence of these genomic regions during the domestication of C. arabica, we conducted an analysis of population structure and a Genome-Wide Association Study (GWAS). For this, we used genotyping by sequencing (GBS) and phenotyping for resistance to BHB of a panel with 120 C. arabica Ethiopian accessions from a historical FAO collection, 11 C. arabica cultivars, and the BA-10 genotype. Population structure analysis based on single-nucleotide polymorphisms (SNPs) markers showed that the 132 accessions are divided into 3 clusters: most wild Ethiopian accessions, domesticated Ethiopian accessions, and cultivars. GWAS, using the single-locus model MLM and the multi-locus models mrMLM, FASTmrMLM, FASTmrEMMA, and ISIS EM-BLASSO, identified 11 QTNs associated with resistance to BHB. Among these QTNs, the four with the highest values of association for resistance to BHB are linked to g000 (Chr_0_434_435) and g010741 genes, which are predicted to encode a serine/threonine-kinase protein and a nucleoti... Mostrar Tudo |
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Thesagro: |
Coffea Arábica. |
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Thesaurus Nal: |
Disease resistance; Genome; Genome-wide association study; Pseudomonas syringae group. |
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Categoria do assunto: |
-- |
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URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/doc/1150817/1/Genome-wide-association-study.pdf
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Marc: |
LEADER 03197naa a2200325 a 4500
001 2150817
005 2023-01-09
008 2022 bl uuuu u00u1 u #d
024 7 $ahttps://doi.org/10.3389/fpls.2022.989847$2DOI
100 1 $aARIYOSHI, C.
245 $aGenome-wide association study for resistance to Pseudomonas syringae pv. garcae in Coffea arabica.$h[electronic resource]
260 $c2022
520 $aBacteria halo blight (BHB), a coffee plant disease caused by Pseudomonas syringae pv. garcae, has been gaining importance in producing mountain regions and mild temperatures areas as well as in coffee nurseries. Most Coffea arabica cultivars are susceptible to this disease. In contrast, a great source of genetic diversity and resistance to BHB are found in C. arabica Ethiopian accessions. Aiming to identify quantitative trait nucleotides (QTNs) associated with resistance to BHB and the influence of these genomic regions during the domestication of C. arabica, we conducted an analysis of population structure and a Genome-Wide Association Study (GWAS). For this, we used genotyping by sequencing (GBS) and phenotyping for resistance to BHB of a panel with 120 C. arabica Ethiopian accessions from a historical FAO collection, 11 C. arabica cultivars, and the BA-10 genotype. Population structure analysis based on single-nucleotide polymorphisms (SNPs) markers showed that the 132 accessions are divided into 3 clusters: most wild Ethiopian accessions, domesticated Ethiopian accessions, and cultivars. GWAS, using the single-locus model MLM and the multi-locus models mrMLM, FASTmrMLM, FASTmrEMMA, and ISIS EM-BLASSO, identified 11 QTNs associated with resistance to BHB. Among these QTNs, the four with the highest values of association for resistance to BHB are linked to g000 (Chr_0_434_435) and g010741 genes, which are predicted to encode a serine/threonine-kinase protein and a nucleotide binding site leucine-rich repeat (NBS-LRR), respectively. These genes displayed a similar transcriptional downregulation profile in a C. arabica susceptible cultivar and in a C. arabica cultivar with quantitative resistance, when infected with P. syringae pv. garcae. However, peaks of upregulation were observed in a C. arabica cultivar with qualitative resistance, for both genes. Our results provide SNPs that have potential for application in Marker Assisted Selection (MAS) and expand our understanding about the complex genetic control of the resistance to BHB in C. arabica. In addition, the findings contribute to increasing understanding of the C. arabica domestication history.
650 $aDisease resistance
650 $aGenome
650 $aGenome-wide association study
650 $aPseudomonas syringae group
650 $aCoffea Arábica
700 1 $aSANT'ANA, G. C.
700 1 $aFELICIO, M. S.
700 1 $aSERA, G. H.
700 1 $aNOGUEIRA, L. M.
700 1 $aRODRIGUES, L. M. R.
700 1 $aFERREIRA, R. V.
700 1 $aSILVA, B. S. R. da
700 1 $aRESENDE, M. L. V. de
700 1 $aDESTÉFANO, S. A. L.
700 1 $aDOMINGUES, D. S.
700 1 $aPEREIRA, L. F. P.
773 $tFrontiers in Plant Science$gv. 13, article 989847, 2022.
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Registro original: |
Embrapa Café (CNPCa) |
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| Registros recuperados : 19 | |
| 1. |  | RESENDE, M. L. V. de; ARAUJO, J. C. A. de; BEZERRA, J. L.; FRAGA, L. S. Anel vermelho: principal problema fitossanitário do dendezeiro na Bahia. Fitopatologia Brasileira, v. 11, n. 2, p. 314, jun. 1986. Suplemento. Edição dos resumos das palestras e trabalhos apresentados no 19º Congresso Brasileiro de Fitopatologia, 1986, Brasília, DF. Resumo 68.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Amazônia Ocidental. |
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| 6. | | PEREIRA, R. B.; ALVES, E.; RIBEIRO JÚNIOR, P. M.; RESENDE, M. L. V. de; LUCAS, G. C.; FERREIRA, J. B. Extrato de casca de café, óleo essencial de tomilho e acibenzolar-S-metil no manejo da cercosporiose-do-cafeeiro. Pesquisa Agropecuária Brasileira, Brasília, DF, v. 43, n. 10, p. 1287-1296, out. 2008. Título em inglês: Coffee berry husk extract, thyme essential oil and acibenzolar-S-methyl in the control of brown eye spot of coffee tree.| Biblioteca(s): Embrapa Unidades Centrais. |
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| 7. | | GADAGA, S. J. C.; ABREU, M. S. de; RESENDE, M. L. V. de; RIBEIRO JUNIOR, P. M. Phosphites for the control of anthracnose in common bean. Pesquisa Agropecuária Brasileira, Brasília, DF, v. 52, n. 1, p. 36-44, jan. 2017.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 2 |
| Biblioteca(s): Embrapa Semiárido; Embrapa Unidades Centrais. |
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| 8. | | CAVALCANTI, F. R.; RESENDE, M. L. V. de; PEREIRA, R. B.; COSTA, J. de C. do B.; CARVALHO, C. P. da S. Atividades de quitinase e beta-1,3-glucanase após eliciação das defesas do tomateiro contra a mancha-bacteriana. Pesquisa Agropecuária Brasileira, Brasília, DF, v. 41, n. 12, p. 1721-1730, dez. 2006 Título em inglês: Chitinase and beta-1,3-glucanase activities after the elicitation of tomato defenses against bacterial spot.| Biblioteca(s): Embrapa Unidades Centrais. |
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| 9. | | PEREIRA, V. F.; RESENDE, M. L. V. de; RIBEIRO JÚNIOR, P. M.; REGINA, M. de A.; MOTA, R. V. da; VITORINO, L. R. R. Fosfito de potássio no controle do míldio da videira e características físico-químicas de uva Merlot. Pesquisa Agropecuária Brasileira, Brasília, DF, v. 47, n. 11, p. 1581-1588, nov. 2012. Título em inglês: Potassium phosphite on the control of downy mildew of grapevine and physicochemical characteristics of Merlot grapes.| Biblioteca(s): Embrapa Unidades Centrais. |
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| 12. | | PEREIRA, V. F.; RESENDE, M. L. V. de; MONTEIRO, A. C. A.; RIBEIRO JÚNIOR, P. M.; REGINA, M. de A.; MEDEIROS, F. C. L. Produtos alternativos na proteção da videira contra o míldio. Pesquisa Agropecuária Brasileira, Brasília, DF, v. 45, n. 1, p. 25-31, jan. 2010. Titulo em inglês: Alternative products for the protection of vine against downy mildew.| Biblioteca(s): Embrapa Unidades Centrais. |
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| 13. | | PORTO, B. N.; CAIXETA, E. T.; VIDIGAL, P. M. P.; LELIS, D. T.; ZAMBOLIM, E. M.; RESENDE, M. L. V. de. Predição do secretoma de Hemileia vastatrix RAÇA XXXIII. In: SIMPÓSIO DE PESQUISA DOS CAFÉS DO BRSIL, 9., 2015, Curitiba. Anais... Brasília, DF: Embrapa Café, 2015.| Tipo: Artigo em Anais de Congresso |
| Biblioteca(s): Embrapa Café. |
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| 14. | | ISHIDA, A. K. N.; COSTA, R. C. da; MIRANDA, V. S.; BONFIM, K.; OLIVEIRA, L. C. de; RIBEIRO JÚNIOR, P. M.; RESENDE, M. L. V. de. Indução de resistência no controle da mancha bacteriana do maracujazeiro. In: CONGRESSO BRASILEIRO DE DEFENSIVOS AGRÍCOLAS NATURAIS, 6., 2013, João Pessoa. Anais... João Pessoa: UEPB: Embrapa, 2013. p. 134.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Amazônia Oriental. |
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| 15. | | TAVARES, G. M.; LARANJEIRA, D.; LUZ, E. D. M. N.; SILVA, T. R.; PIROVANI, C. P.; RESENDE, M. L. V. de; RIBEIRO JÚNIOR, P. M. Indução de resistência do mamoeiro à podridão radicular por indutores bióticos e abióticos. Pesquisa Agropecuária Brasileira, Brasília, DF, v. 44, n. 11, p. 1416-1423, nov. 2009. Título em inglês: Resistance induction to root rot in papaya by biotic and abiotic elicitors.| Biblioteca(s): Embrapa Unidades Centrais. |
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| 16. | | ISHIDA, A. K. N.; SOUZA, R. M. de; RESENDE, M. L. V. de; ZACARONI, A. B.; VILAS BÔAS, C. H.; SOUZA, J. T. de. Rizobactérias no controle da mancha angular do algodoeiro. Ciência e Agrotecnologia, Lavras, v. 32, n. 1, p. 149-156, jan./fev. 2008. Título em inglês: Rhizobacteria to control cotton bacterial blight.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: Nacional - A |
| Biblioteca(s): Embrapa Amazônia Oriental. |
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| 17. | | MONTEIRO, A. C. A.; RESENDE, M. L. V. de; VALENTE, T. C. T.; RIBEIRO JUNIOR, P. M.; PEREIRA, V. F.; COSTA, J. R. da; SILVA, J. A. G. da. Manganese phosphite in Coffee defence against Hemileia vastatrix, the coffee rust fungus: biochemical and molecular analyses. Journal of Phytopathology, v. 164, p. 1043-1053, 2016.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: B - 1 |
| Biblioteca(s): Embrapa Semiárido. |
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| 18. | | PORTO, B. N.; CAIXETA, E. T.; MATHIONI, S. M.; VIDIGAL, P. M. P.; ZAMBOLIM, L.; ZAMBOLIM, E. M.; DONOFRIO, N.; POLSON, S. W.; MAIA, T. A.; CHEN, C.; ADETUNJI, M.; KINGHAM, B.; DALIO, R. J. D.; RESENDE, M. L. V. de. Genome sequencing and transcript analysis of Hemileia vastatrix reveal expression dynamics of candidate effectors dependent on host compatibility. PLOSONE, April 18, 2019.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
| Biblioteca(s): Embrapa Café. |
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| 19. | | ARIYOSHI, C.; SANT'ANA, G. C.; FELICIO, M. S.; SERA, G. H.; NOGUEIRA, L. M.; RODRIGUES, L. M. R.; FERREIRA, R. V.; SILVA, B. S. R. da; RESENDE, M. L. V. de; DESTÉFANO, S. A. L.; DOMINGUES, D. S.; PEREIRA, L. F. P. Genome-wide association study for resistance to Pseudomonas syringae pv. garcae in Coffea arabica. Frontiers in Plant Science, v. 13, article 989847, 2022.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
| Biblioteca(s): Embrapa Café. |
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| Registros recuperados : 19 | |
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| Nenhum registro encontrado para a expressão de busca informada. |
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