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Registro Completo |
Biblioteca(s): |
Embrapa Café. |
Data corrente: |
08/03/2016 |
Data da última atualização: |
10/03/2016 |
Tipo da produção científica: |
Artigo em Periódico Indexado |
Autoria: |
YUYAMA, P. M.; REIS JUNIOR, O.; IVAMOTO, S. T.; DOMINGUES, D. S.; CARAZZOLLE, M. F.; PEREIRA, G. A. G.; CHARMETANT, P.; LEROY, T.; PEREIRA, L. F. P. |
Afiliação: |
PRISCILA MARY YUYAMA, UEL; OSVALDO REIS JÚNIOR, UNICAMP; SUZANA TIEMI IVAMOTO, UEL/IAPAR; DOUGLAS SILVA DOMINGUES, IAPAR/UNESP; MARCELO FALSARELLA CARAZZOLLE, UNICAMP; GONÇALO AMARANTE GUIMARÃES PEREIRA, UNICAMP; PIERRE CHARMETANT, CIRAD; THIERRY LEROY, CIRAD; LUIZ FILIPE PROTASIO PEREIRA, SAPC. |
Título: |
Transcriptome analysis in Coffea eugenioides, an Arabica coffee ancestor, reveals differentially expressed genes inleaves and fruits. |
Ano de publicação: |
2016 |
Fonte/Imprenta: |
Molecular Genetics and Genomics, v. 291, n. 1, p. 323-336. 2016 |
Idioma: |
Inglês |
Conteúdo: |
Studies in diploid parental species of polyploid plants are important to understand their contributions to the formation of plant and species evolution. Coffea eugenioides is a diploid species that is considered to be an ancestor of allopolyploid Coffea arabica together with Coffea canephora. Despite its importance in the evolutionary history of the main economic species of coffee, no study has focused on C. eugenioides molecular genetics. RNA-seq creates the possibility to generate reference transcriptomes and identify coding genes and potential candidates related to important agronomic traits. Therefore, the main objectives were to obtain a global overview of transcriptionally active genes in this species using next generation sequencing and to analyze specific genes that were highly expressed in leaves and fruits with potential exploratory characteristics for breeding and understanding the evolutionary biology of coffee. A de novo assembly generated 36,935 contigs that were annotated using eight databases. We observed a total of ~5000 differentially expressed genes between leaves and fruits. Several genes exclusively expressed in fruits did not exhibit similarities with sequences in any database. We selected ten differentially expressed unigenes in leaves and fruits to evaluate transcriptional profiles using qPCR. Our study provides the first gene catalog for C. eugenioides and enhances the knowledge concerning the mechanisms involved in the C. arabica homeologous. Furthermore, this work will open new avenues for studies into specific genes and pathways in this species, especially related to fruit, and our data have potential value in assisted breeding applications. MenosStudies in diploid parental species of polyploid plants are important to understand their contributions to the formation of plant and species evolution. Coffea eugenioides is a diploid species that is considered to be an ancestor of allopolyploid Coffea arabica together with Coffea canephora. Despite its importance in the evolutionary history of the main economic species of coffee, no study has focused on C. eugenioides molecular genetics. RNA-seq creates the possibility to generate reference transcriptomes and identify coding genes and potential candidates related to important agronomic traits. Therefore, the main objectives were to obtain a global overview of transcriptionally active genes in this species using next generation sequencing and to analyze specific genes that were highly expressed in leaves and fruits with potential exploratory characteristics for breeding and understanding the evolutionary biology of coffee. A de novo assembly generated 36,935 contigs that were annotated using eight databases. We observed a total of ~5000 differentially expressed genes between leaves and fruits. Several genes exclusively expressed in fruits did not exhibit similarities with sequences in any database. We selected ten differentially expressed unigenes in leaves and fruits to evaluate transcriptional profiles using qPCR. Our study provides the first gene catalog for C. eugenioides and enhances the knowledge concerning the mechanisms involved in the C. arabica homeologous. Furthe... Mostrar Tudo |
Palavras-Chave: |
Differentially expressed genes; Gene annotation; Homeologous; RNA-seq. |
Thesaurus Nal: |
Coffea. |
Categoria do assunto: |
-- |
URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/item/140757/1/Transcriptome-analysis-in-coffea.pdf
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Marc: |
LEADER 02549naa a2200277 a 4500 001 2040005 005 2016-03-10 008 2016 bl uuuu u00u1 u #d 100 1 $aYUYAMA, P. M. 245 $aTranscriptome analysis in Coffea eugenioides, an Arabica coffee ancestor, reveals differentially expressed genes inleaves and fruits.$h[electronic resource] 260 $c2016 520 $aStudies in diploid parental species of polyploid plants are important to understand their contributions to the formation of plant and species evolution. Coffea eugenioides is a diploid species that is considered to be an ancestor of allopolyploid Coffea arabica together with Coffea canephora. Despite its importance in the evolutionary history of the main economic species of coffee, no study has focused on C. eugenioides molecular genetics. RNA-seq creates the possibility to generate reference transcriptomes and identify coding genes and potential candidates related to important agronomic traits. Therefore, the main objectives were to obtain a global overview of transcriptionally active genes in this species using next generation sequencing and to analyze specific genes that were highly expressed in leaves and fruits with potential exploratory characteristics for breeding and understanding the evolutionary biology of coffee. A de novo assembly generated 36,935 contigs that were annotated using eight databases. We observed a total of ~5000 differentially expressed genes between leaves and fruits. Several genes exclusively expressed in fruits did not exhibit similarities with sequences in any database. We selected ten differentially expressed unigenes in leaves and fruits to evaluate transcriptional profiles using qPCR. Our study provides the first gene catalog for C. eugenioides and enhances the knowledge concerning the mechanisms involved in the C. arabica homeologous. Furthermore, this work will open new avenues for studies into specific genes and pathways in this species, especially related to fruit, and our data have potential value in assisted breeding applications. 650 $aCoffea 653 $aDifferentially expressed genes 653 $aGene annotation 653 $aHomeologous 653 $aRNA-seq 700 1 $aREIS JUNIOR, O. 700 1 $aIVAMOTO, S. T. 700 1 $aDOMINGUES, D. S. 700 1 $aCARAZZOLLE, M. F. 700 1 $aPEREIRA, G. A. G. 700 1 $aCHARMETANT, P. 700 1 $aLEROY, T. 700 1 $aPEREIRA, L. F. P. 773 $tMolecular Genetics and Genomics$gv. 291, n. 1, p. 323-336. 2016
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Registro original: |
Embrapa Café (CNPCa) |
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Registro Completo
Biblioteca(s): |
Embrapa Amazônia Oriental. |
Data corrente: |
23/11/2009 |
Data da última atualização: |
15/06/2022 |
Tipo da produção científica: |
Artigo em Anais de Congresso / Nota Técnica |
Autoria: |
MELO, E. C. A.; POLTRONIERI, M. C.; LEMOS, O. F. de; AMARAL, L. M. S.; ALVES, S. A. O. |
Afiliação: |
ELANE CRISTINA AMORAS MELO, Bolsista FUNTEC/ Embrapa; MARLI COSTA POLTRONIERI, CPATU; ORIEL FILGUEIRA DE LEMOS, CPATU; LEILA MÁRCIA SOUZA AMARAL, Bolsista CNPq/ Embrapa; SÉRGIO AUGUSTO OLIVEIRA ALVES, GRADUANDO UFPA. |
Título: |
Efeito de 6-benzilaminopurina (BAP) para o processo de micropropagação de bastão-do-imperador (Etlingera elatior). |
Ano de publicação: |
2005 |
Fonte/Imprenta: |
In: SEMINÁRIO DE INICIAÇÃO CIENTÍFICA DA UFRA, 2.; SEMINÁRIO DE INICIAÇÃO CIENTÍFICA DA EMBRAPA AMAZÔNIA ORIENTAL (AVALIAÇÃO-2004), 8., 2005, Belém, PA. Ciência e tecnologia com inclusão social: anais. Belém, PA: UFRA: Embrapa Amazônia Oriental, 2005. |
Descrição Física: |
1 CD-ROM. |
Idioma: |
Português |
Palavras-Chave: |
Bastão-do-imperador. |
Categoria do assunto: |
-- |
URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/item/44648/1/ELANECRISTINAAMORAS.pdf
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Marc: |
LEADER 00765nam a2200169 a 4500 001 1575606 005 2022-06-15 008 2005 bl uuuu u00u1 u #d 100 1 $aMELO, E. C. A. 245 $aEfeito de 6-benzilaminopurina (BAP) para o processo de micropropagação de bastão-do-imperador (Etlingera elatior). 260 $aIn: SEMINÁRIO DE INICIAÇÃO CIENTÍFICA DA UFRA, 2.; SEMINÁRIO DE INICIAÇÃO CIENTÍFICA DA EMBRAPA AMAZÔNIA ORIENTAL (AVALIAÇÃO-2004), 8., 2005, Belém, PA. Ciência e tecnologia com inclusão social: anais. Belém, PA: UFRA: Embrapa Amazônia Oriental$c2005 300 $c1 CD-ROM. 653 $aBastão-do-imperador 700 1 $aPOLTRONIERI, M. C. 700 1 $aLEMOS, O. F. de 700 1 $aAMARAL, L. M. S. 700 1 $aALVES, S. A. O.
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