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Registro Completo |
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Biblioteca(s): |
Embrapa Cerrados. |
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Data corrente: |
27/09/2018 |
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Data da última atualização: |
21/11/2018 |
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Tipo da produção científica: |
Artigo em Periódico Indexado |
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Autoria: |
ESTRADA DE LOS DANTOS, P.; PALMER, M.; CHAVEZ-RAMIREZ, B.; BEUKES, C.; STEENKAMP, E. T.; BRISCOE, L.; KHAN, N.; MALUK, M.; LAFOS, M.; HUMM, E.; ARRABIT, M.; CROOK, M.; GROSS, E.; SIMON, M. F.; REIS JUNIOR, F. B. dos; WHITMAN, W. B.; SHAPIRO, N.; POOLE, P. S.; HIRSCH, A. M.; VENTER, S. N.; JAMES, E. K. |
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Afiliação: |
Paulina Estrada-de los Santos, Instituto Politécnico Nacional, Escuela Nacional de Ciencias Biológica; Marike Palmer, University of Pretoria; Belén Chávez-Ramírez, Instituto Politécnico Nacional, Escuela Nacional de Ciencias Biológicas; Chrizelle Beukes, University of Pretoria; Emma T. Steenkamp, University of Pretoria; Leah Briscoe, University of California; Noor Khan, University of California; Marta Maluk, The James Hutton Institute; Marcel Lafos, The James Hutton Institute; Ethan Humm, University of California; Monique Arrabit, University of California; Matthew Crook, Weber State University; Eduardo Gross, Santa Cruz State University; MARCELO FRAGOMENI SIMON, Cenargen; FABIO BUENO DOS REIS JUNIOR, CPAC; William B. Whitman, University of Georgia; Nicole Shapiro, Walnut Creek; Philip S. Poole, University of Oxford; Ann M. Hirsch, University of California; Stephanus N. Venter, University of Pretoria; Euan K. James, The James Hutton Institute. |
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Título: |
Whole genome analyses suggests that Burkholderiasensu lato contains two additional novel genera (Mycetohabitans gen. nov., and Trinickia gen. nov.): implications for the evolution of diazotrophy and nodulation in the Burkholderiaceae. |
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Ano de publicação: |
2018 |
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Fonte/Imprenta: |
Genes, v. 9, n. 8, article 389, 2018. |
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DOI: |
https://doi.org/10.3390/genes9080389 |
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Idioma: |
Inglês |
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Conteúdo: |
Burkholderia sensu lato is a large and complex group, containing pathogenic, phytopathogenic, symbiotic and non-symbiotic strains from a very wide range of environmental (soil, water, plants, fungi) and clinical (animal, human) habitats. Its taxonomy has been evaluated several times through the analysis of 16S rRNA sequences, concantenated 4?7 housekeeping gene sequences, and lately by genome sequences. Currently, the division of this group into Burkholderia, Caballeronia, Paraburkholderia, and Robbsia is strongly supported by genome analysis. These new genera broadly correspond to the various habitats/lifestyles of Burkholderia s.l., e.g., all the plant beneficial and environmental (PBE) strains are included in Paraburkholderia (which also includes all the N2-fixing legume symbionts) and Caballeronia, while most of the human and animal pathogens are retained in Burkholderia sensu stricto. However, none of these genera can accommodate two important groups of species. One of these includes the closely related Paraburkholderia rhizoxinica and Paraburkholderia endofungorum, which are both symbionts of the fungal phytopathogen Rhizopus microsporus. The second group comprises the Mimosa-nodulating bacterium Paraburkholderia symbiotica, the phytopathogen Paraburkholderia caryophylli, and the soil bacteria Burkholderia dabaoshanensis and Paraburkholderia soli. In order to clarify their positions within Burkholderia sensu lato, a phylogenomic approach based on a maximum likelihood analysis of conserved genes from more than 100 Burkholderia sensu lato species was carried out. Additionally, the average nucleotide identity (ANI) and amino acid identity (AAI) were calculated. The data strongly supported the existence of two distinct and unique clades, which in fact sustain the description of two novel genera Mycetohabitans gen. nov. and Trinickia gen. nov. The newly proposed combinations are Mycetohabitans endofungorum comb. nov., Mycetohabitansrhizoxinica comb. nov., Trinickia caryophylli comb. nov., Trinickiadabaoshanensis comb. nov., Trinickia soli comb. nov., and Trinickiasymbiotica comb. nov. Given that the division between the genera that comprise Burkholderia s.l. in terms of their lifestyles is often complex, differential characteristics of the genomes of these new combinations were investigated. In addition, two important lifestyle-determining traits?diazotrophy and/or symbiotic nodulation, and pathogenesis?were analyzed in depth i.e., the phylogenetic positions of nitrogen fixation and nodulation genes in Trinickia via-à-vis other Burkholderiaceae were determined, and the possibility of pathogenesis in Mycetohabitans and Trinickia was tested by performing infection experiments on plants and the nematode Caenorhabditis elegans. It is concluded that (1) T. symbiotica nif and nod genes fit within the wider Mimosa-nodulating Burkholderiaceae but appear in separate clades and that T. caryophyllinif genes are basal to the free-living Burkholderia s.l. strains, while with regard to pathogenesis (2) none of the Mycetohabitans and Trinickia strains tested are likely to be pathogenic, except for the known phytopathogen T. caryophylli. MenosBurkholderia sensu lato is a large and complex group, containing pathogenic, phytopathogenic, symbiotic and non-symbiotic strains from a very wide range of environmental (soil, water, plants, fungi) and clinical (animal, human) habitats. Its taxonomy has been evaluated several times through the analysis of 16S rRNA sequences, concantenated 4?7 housekeeping gene sequences, and lately by genome sequences. Currently, the division of this group into Burkholderia, Caballeronia, Paraburkholderia, and Robbsia is strongly supported by genome analysis. These new genera broadly correspond to the various habitats/lifestyles of Burkholderia s.l., e.g., all the plant beneficial and environmental (PBE) strains are included in Paraburkholderia (which also includes all the N2-fixing legume symbionts) and Caballeronia, while most of the human and animal pathogens are retained in Burkholderia sensu stricto. However, none of these genera can accommodate two important groups of species. One of these includes the closely related Paraburkholderia rhizoxinica and Paraburkholderia endofungorum, which are both symbionts of the fungal phytopathogen Rhizopus microsporus. The second group comprises the Mimosa-nodulating bacterium Paraburkholderia symbiotica, the phytopathogen Paraburkholderia caryophylli, and the soil bacteria Burkholderia dabaoshanensis and Paraburkholderia soli. In order to clarify their positions within Burkholderia sensu lato, a phylogenomic approach based on a maximum likelihood a... Mostrar Tudo |
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Palavras-Chave: |
Genes conservados. |
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Thesagro: |
Análise Comparativa; Filogenia; Genoma. |
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Thesaurus Nal: |
Burkholderiaceae. |
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Categoria do assunto: |
V Taxonomia de Organismos |
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URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/item/183636/1/Whole-Genome-Analyses-Suggests-that-Burkholderia-sensu-lato-Contains-Two-Additional-Novel-Genera-apagar.pdf
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Marc: |
LEADER 04499naa a2200433 a 4500
001 2096511
005 2018-11-21
008 2018 bl uuuu u00u1 u #d
024 7 $ahttps://doi.org/10.3390/genes9080389$2DOI
100 1 $aESTRADA DE LOS DANTOS, P.
245 $aWhole genome analyses suggests that Burkholderiasensu lato contains two additional novel genera (Mycetohabitans gen. nov., and Trinickia gen. nov.)$bimplications for the evolution of diazotrophy and nodulation in the Burkholderiaceae.$h[electronic resource]
260 $c2018
520 $aBurkholderia sensu lato is a large and complex group, containing pathogenic, phytopathogenic, symbiotic and non-symbiotic strains from a very wide range of environmental (soil, water, plants, fungi) and clinical (animal, human) habitats. Its taxonomy has been evaluated several times through the analysis of 16S rRNA sequences, concantenated 4?7 housekeeping gene sequences, and lately by genome sequences. Currently, the division of this group into Burkholderia, Caballeronia, Paraburkholderia, and Robbsia is strongly supported by genome analysis. These new genera broadly correspond to the various habitats/lifestyles of Burkholderia s.l., e.g., all the plant beneficial and environmental (PBE) strains are included in Paraburkholderia (which also includes all the N2-fixing legume symbionts) and Caballeronia, while most of the human and animal pathogens are retained in Burkholderia sensu stricto. However, none of these genera can accommodate two important groups of species. One of these includes the closely related Paraburkholderia rhizoxinica and Paraburkholderia endofungorum, which are both symbionts of the fungal phytopathogen Rhizopus microsporus. The second group comprises the Mimosa-nodulating bacterium Paraburkholderia symbiotica, the phytopathogen Paraburkholderia caryophylli, and the soil bacteria Burkholderia dabaoshanensis and Paraburkholderia soli. In order to clarify their positions within Burkholderia sensu lato, a phylogenomic approach based on a maximum likelihood analysis of conserved genes from more than 100 Burkholderia sensu lato species was carried out. Additionally, the average nucleotide identity (ANI) and amino acid identity (AAI) were calculated. The data strongly supported the existence of two distinct and unique clades, which in fact sustain the description of two novel genera Mycetohabitans gen. nov. and Trinickia gen. nov. The newly proposed combinations are Mycetohabitans endofungorum comb. nov., Mycetohabitansrhizoxinica comb. nov., Trinickia caryophylli comb. nov., Trinickiadabaoshanensis comb. nov., Trinickia soli comb. nov., and Trinickiasymbiotica comb. nov. Given that the division between the genera that comprise Burkholderia s.l. in terms of their lifestyles is often complex, differential characteristics of the genomes of these new combinations were investigated. In addition, two important lifestyle-determining traits?diazotrophy and/or symbiotic nodulation, and pathogenesis?were analyzed in depth i.e., the phylogenetic positions of nitrogen fixation and nodulation genes in Trinickia via-à-vis other Burkholderiaceae were determined, and the possibility of pathogenesis in Mycetohabitans and Trinickia was tested by performing infection experiments on plants and the nematode Caenorhabditis elegans. It is concluded that (1) T. symbiotica nif and nod genes fit within the wider Mimosa-nodulating Burkholderiaceae but appear in separate clades and that T. caryophyllinif genes are basal to the free-living Burkholderia s.l. strains, while with regard to pathogenesis (2) none of the Mycetohabitans and Trinickia strains tested are likely to be pathogenic, except for the known phytopathogen T. caryophylli.
650 $aBurkholderiaceae
650 $aAnálise Comparativa
650 $aFilogenia
650 $aGenoma
653 $aGenes conservados
700 1 $aPALMER, M.
700 1 $aCHAVEZ-RAMIREZ, B.
700 1 $aBEUKES, C.
700 1 $aSTEENKAMP, E. T.
700 1 $aBRISCOE, L.
700 1 $aKHAN, N.
700 1 $aMALUK, M.
700 1 $aLAFOS, M.
700 1 $aHUMM, E.
700 1 $aARRABIT, M.
700 1 $aCROOK, M.
700 1 $aGROSS, E.
700 1 $aSIMON, M. F.
700 1 $aREIS JUNIOR, F. B. dos
700 1 $aWHITMAN, W. B.
700 1 $aSHAPIRO, N.
700 1 $aPOOLE, P. S.
700 1 $aHIRSCH, A. M.
700 1 $aVENTER, S. N.
700 1 $aJAMES, E. K.
773 $tGenes$gv. 9, n. 8, article 389, 2018.
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Embrapa Cerrados (CPAC) |
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Biblioteca(s): |
Embrapa Florestas. |
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Data corrente: |
21/09/2015 |
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Data da última atualização: |
10/03/2016 |
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Tipo da produção científica: |
Resumo em Anais de Congresso |
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Autoria: |
SILVA, T. A. C.; CORREA, R. B.; SANTOS, A.; FERREIRA, A.; NALDONY, H.; CUNHA, L. F.; SILVA, E. da; CORAL, S. C. T.; VENEGAS, C. P.; LIMA, A. M. A.; SCHOCK, M.; DECAENS, T.; ACIOLLI, A. N. S.; JAMES, S.; BARTZ, M. L. C.; VELÁSQUEZ. E.; LAVELLE, P. M.; KILLE, P.; CLEMENT, C.; MARTINS, G. C.; MUNIZ, A. W.; PUCCI, P.; BROWN, G. G.; TERRA PRETO DE ÍNDIO NETWORK. |
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Afiliação: |
Telma A. C. Silva, Mestranda, Instituto de Pesquisas da Amazônia; Rafaella B. Correa, Bolsista Fapeam; Alessandra Santos, Mestranda, UFPR; Alexandre Ferreira, Doutorando, UFPR; Herlon Naldony, Doutorando UFPR; Luis F. Cunha, Pós-doutorando, Embrapa Florestas; Elodie da Silva, Pós-doutorando, Embrapa Florestas; Sandra C. T. Coral, Instituto Amazonico de Investigaciones Cientificas; Clara P. Venegas, Instituto Amazonico de Investigaciones Cientificas; Angela M. A. Lima, Universidade Federal do Oeste do Pará; Myrtle Schock, Universidade Federal do Oeste do Pará; Tibhaud Decaens, Universidade de Montpellier; Agno N. S. Aciolli, Universidade Federal do Amazonas; Samuel James, Universidade de Iowa; Marie L. C. Bartz, Universidade Positivo; Elena Velásquez, Institut de Recherche sur le Développement; Patrick M. Lavelle, Institut de Recherche sur le Développement; Peter Kille, Universidade de Cardiff; Charles Clement, Instituto de Pesquisas da Amazônia; GILVAN COIMBRA MARTINS, CPAA; ALEKSANDER WESTPHAL MUNIZ, CPAA; Paula Pucci, Colaboradora; GEORGE GARDNER BROWN, CNPF. |
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Título: |
População e biomassa de minhocas em Terra Preta de Índio no Amazonas utilizando diferentes metodologias de coleta. |
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Ano de publicação: |
2015 |
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Fonte/Imprenta: |
In: ENCONTRO LATINO-AMERICANO DE ECOLOGIA E TAXONOMIA DE OLIGOQUETAS, 5; SIMPÓSIO ENGENHEIROS EDÁFICOS, FERTILIDADE DO SOLO E TERRA PRETA DE ÍNDIO (TPI), 2015, Curitiba. Anais. [S.l.]: Federação Brasileira de plantio direto de irrigação, 2015. |
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Páginas: |
p. 96. |
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Descrição Física: |
Disponível online. |
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Idioma: |
Português |
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Notas: |
Resumo. 5° ELAETAO. |
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Palavras-Chave: |
Terra Preta de Índio. |
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Thesagro: |
Biomassa; Minhoca. |
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Thesaurus NAL: |
Amazonia. |
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Categoria do assunto: |
-- |
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URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/item/130065/1/2015-GeorgeB-ELAETAO-Populacao.pdf
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Marc: |
LEADER 01460nam a2200445 a 4500
001 2024565
005 2016-03-10
008 2015 bl uuuu u00u1 u #d
100 1 $aSILVA, T. A. C.
245 $aPopulação e biomassa de minhocas em Terra Preta de Índio no Amazonas utilizando diferentes metodologias de coleta.$h[electronic resource]
260 $aIn: ENCONTRO LATINO-AMERICANO DE ECOLOGIA E TAXONOMIA DE OLIGOQUETAS, 5; SIMPÓSIO ENGENHEIROS EDÁFICOS, FERTILIDADE DO SOLO E TERRA PRETA DE ÍNDIO (TPI), 2015, Curitiba. Anais. [S.l.]: Federação Brasileira de plantio direto de irrigação$c2015
300 $ap. 96.$cDisponível online.
500 $aResumo. 5° ELAETAO.
650 $aAmazonia
650 $aBiomassa
650 $aMinhoca
653 $aTerra Preta de Índio
700 1 $aCORREA, R. B.
700 1 $aSANTOS, A.
700 1 $aFERREIRA, A.
700 1 $aNALDONY, H.
700 1 $aCUNHA, L. F.
700 1 $aSILVA, E. da
700 1 $aCORAL, S. C. T.
700 1 $aVENEGAS, C. P.
700 1 $aLIMA, A. M. A.
700 1 $aSCHOCK, M.
700 1 $aDECAENS, T.
700 1 $aACIOLLI, A. N. S.
700 1 $aJAMES, S.
700 1 $aBARTZ, M. L. C.
700 1 $aVELÁSQUEZ. E.
700 1 $aLAVELLE, P. M.
700 1 $aKILLE, P.
700 1 $aCLEMENT, C.
700 1 $aMARTINS, G. C.
700 1 $aMUNIZ, A. W.
700 1 $aPUCCI, P.
700 1 $aBROWN, G. G.
700 1 $aTERRA PRETO DE ÍNDIO NETWORK
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Embrapa Florestas (CNPF) |
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