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Registro Completo |
Biblioteca(s): |
Embrapa Semiárido. |
Data corrente: |
05/03/1993 |
Data da última atualização: |
13/06/2017 |
Autoria: |
BRUNDRETT, M. C.; PICHE, Y.; PETERSON, R. L. |
Título: |
A developmental study of the early stages in vesicular-arbuscular mycorrhiza formation. |
Ano de publicação: |
1985 |
Fonte/Imprenta: |
Canadian Journal of Botany, v.63, p.184-194, 1985. |
Idioma: |
Inglês |
Conteúdo: |
Foi desenvolvido um metodo novo para a obtencao de amostras de raizes com as fases iniciais da colonizacao micorrizica. Este metodo de transplante de plantulas para vasos com a simbiose ja estabelecida, permite a producao de muito material na fase inicial do desenvolvimento da associacao micorrizica e uma inoculacao eficiente. |
Palavras-Chave: |
Associacao; Experimental procedure; Formacao; Fungo micorrizico vesicular-arbuscular (MUA); Fungus; Metodo experimental; Micorriza formation; Micorrizico; Vesicular-arbuscular mycorrhizal (VAM) fungi. |
Thesagro: |
Fungo. |
Categoria do assunto: |
O Insetos e Entomologia |
Marc: |
LEADER 01108naa a2200265 a 4500 001 1129462 005 2017-06-13 008 1985 bl --- 0-- u #d 100 1 $aBRUNDRETT, M. C. 245 $aA developmental study of the early stages in vesicular-arbuscular mycorrhiza formation. 260 $c1985 520 $aFoi desenvolvido um metodo novo para a obtencao de amostras de raizes com as fases iniciais da colonizacao micorrizica. Este metodo de transplante de plantulas para vasos com a simbiose ja estabelecida, permite a producao de muito material na fase inicial do desenvolvimento da associacao micorrizica e uma inoculacao eficiente. 650 $aFungo 653 $aAssociacao 653 $aExperimental procedure 653 $aFormacao 653 $aFungo micorrizico vesicular-arbuscular (MUA) 653 $aFungus 653 $aMetodo experimental 653 $aMicorriza formation 653 $aMicorrizico 653 $aVesicular-arbuscular mycorrhizal (VAM) fungi 700 1 $aPICHE, Y. 700 1 $aPETERSON, R. L. 773 $tCanadian Journal of Botany$gv.63, p.184-194, 1985.
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Embrapa Semiárido (CPATSA) |
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Registro Completo
Biblioteca(s): |
Embrapa Cerrados. |
Data corrente: |
12/12/2018 |
Data da última atualização: |
12/12/2018 |
Tipo da produção científica: |
Artigo em Periódico Indexado |
Circulação/Nível: |
A - 1 |
Autoria: |
PERIPOLLI, E.; METZGER, J.; LEMOS, M. V. A. de; STAFUZZA, N. B.; KLUSKA, S.; OLIVIERI, B. F.; FEITOSA, F. L. B.; BERTON, M. P.; LOPES, F. B.; MUNARI, D. P.; LOBO, R. B.; MAGNABOSCO, C. de U.; DI CROCE, F.; OSTERSTOCK, J.; DENISE, S.; PEREIRA, A. S. C.; BALDI, F. |
Afiliação: |
ELISA PERIPOLLI, UNESP; JULIA METZGER, University of Veterinary Medicine Hannover; MARCOS VINICIUS ANTUNES DE LEMOS, UNESP; NEDENIA BONVINOSTAFUZZA, UNESP; SABRINA KLUSKA, UNESP; BIANCA FERREIRA OLIVIERI, UNESP; FABIELI LOUISE BRAGA FEITOSA, UNESP; MARIANA PIATTO BERTON, UNESP; FERNANDO BRITO LOPES, UNESP; DANISIO PRADO MUNARI, UNESP; RAYSILDO BARBOSA LOBO, Associação Nacional de Criadores e Pesquisadores; CLAUDIO DE ULHOA MAGNABOSCO, CPAC; FERNANDO DI CROCE, Zoetis; JASON OSTERSTOCK, Zoetis; SUE DENISE, Zoetis; ANGELICA SIMONE CRAVO PEREIRA, USP; FERNANDO BALDI, UNESP. |
Título: |
Autozygosity islands and ROH patterns in Nellore lineages: evidence of selection for functionally important traits. |
Ano de publicação: |
2018 |
Fonte/Imprenta: |
BMC Genomics, v. 19, 680, 2018. |
DOI: |
https://dx.doi.org/10.1186%2Fs12864-018-5060-8 |
Idioma: |
Inglês |
Conteúdo: |
Abstract Background The aim of this study was to assess genome-wide autozygosity in a Nellore cattle population and to characterize ROH patterns and autozygosity islands that may have occurred due to selection within its lineages. It attempts also to compare estimates of inbreeding calculated from ROH (FROH), genomic relationship matrix (FGRM), and pedigree-based coefficient (FPED). Results The average number of ROH per animal was 55.15 ± 13.01 with an average size of 3.24 Mb. The Nellore genome is composed mostly by a high number of shorter segments accounting for 78% of all ROH, although the proportion of the genome covered by them was relatively small. The genome autozygosity proportion indicates moderate to high inbreeding levels for classical standards, with an average value of 7.15% (178.70 Mb). The average of FPED and FROH, and their correlations (− 0.05 to 0.26) were low. Estimates of correlation between FGRM-FPED was zero, while the correlation (− 0.01 to − 0.07) between FGRM-FROH decreased as a function of ROH length, except for FROH > 8Mb (− 0.03). Overall, inbreeding coefficients were not high for the genotyped animals. Autozygosity islands were evident across the genome (n = 62) and their genomic location did not largely differ within lineages. Enriched terms (p < 0.01) associated with defense response to bacteria (GO:0042742), immune complex reaction (GO:0045647), pregnancy-associated glycoproteins genes (GO:0030163), and organism growth (GO:0040014) were described within the autozygotic islands. Conclusions Low FPED-FROH correlation estimates indicate that FPED is not the most suitable method for capturing ancient inbreeding when the pedigree does not extend back many generations and FROH should be used instead. Enriched terms (p < 0.01) suggest a strong selection for immune response. Non-overlapping islands within the lineages greatly explain the mechanism underlying selection for functionally important traits in Nellore cattle. MenosAbstract Background The aim of this study was to assess genome-wide autozygosity in a Nellore cattle population and to characterize ROH patterns and autozygosity islands that may have occurred due to selection within its lineages. It attempts also to compare estimates of inbreeding calculated from ROH (FROH), genomic relationship matrix (FGRM), and pedigree-based coefficient (FPED). Results The average number of ROH per animal was 55.15 ± 13.01 with an average size of 3.24 Mb. The Nellore genome is composed mostly by a high number of shorter segments accounting for 78% of all ROH, although the proportion of the genome covered by them was relatively small. The genome autozygosity proportion indicates moderate to high inbreeding levels for classical standards, with an average value of 7.15% (178.70 Mb). The average of FPED and FROH, and their correlations (− 0.05 to 0.26) were low. Estimates of correlation between FGRM-FPED was zero, while the correlation (− 0.01 to − 0.07) between FGRM-FROH decreased as a function of ROH length, except for FROH > 8Mb (− 0.03). Overall, inbreeding coefficients were not high for the genotyped animals. Autozygosity islands were evident across the genome (n = 62) and their genomic location did not largely differ within lineages. Enriched terms (p < 0.01) associated with defense response to bacteria (GO:0042742), immune complex reaction (GO:0045647), pr... Mostrar Tudo |
Palavras-Chave: |
Padroes ROH. |
Thesagro: |
Endogamia; Gado Nelore; Genética Animal; Genoma. |
Thesaurus NAL: |
Homozygosity. |
Categoria do assunto: |
G Melhoramento Genético |
URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/item/188276/1/12864-2018-Article-5060-APAGAR.pdf
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Marc: |
LEADER 03204naa a2200397 a 4500 001 2101339 005 2018-12-12 008 2018 bl uuuu u00u1 u #d 024 7 $ahttps://dx.doi.org/10.1186%2Fs12864-018-5060-8$2DOI 100 1 $aPERIPOLLI, E. 245 $aAutozygosity islands and ROH patterns in Nellore lineages$bevidence of selection for functionally important traits.$h[electronic resource] 260 $c2018 520 $aAbstract Background The aim of this study was to assess genome-wide autozygosity in a Nellore cattle population and to characterize ROH patterns and autozygosity islands that may have occurred due to selection within its lineages. It attempts also to compare estimates of inbreeding calculated from ROH (FROH), genomic relationship matrix (FGRM), and pedigree-based coefficient (FPED). Results The average number of ROH per animal was 55.15 ± 13.01 with an average size of 3.24 Mb. The Nellore genome is composed mostly by a high number of shorter segments accounting for 78% of all ROH, although the proportion of the genome covered by them was relatively small. The genome autozygosity proportion indicates moderate to high inbreeding levels for classical standards, with an average value of 7.15% (178.70 Mb). The average of FPED and FROH, and their correlations (− 0.05 to 0.26) were low. Estimates of correlation between FGRM-FPED was zero, while the correlation (− 0.01 to − 0.07) between FGRM-FROH decreased as a function of ROH length, except for FROH > 8Mb (− 0.03). Overall, inbreeding coefficients were not high for the genotyped animals. Autozygosity islands were evident across the genome (n = 62) and their genomic location did not largely differ within lineages. Enriched terms (p < 0.01) associated with defense response to bacteria (GO:0042742), immune complex reaction (GO:0045647), pregnancy-associated glycoproteins genes (GO:0030163), and organism growth (GO:0040014) were described within the autozygotic islands. Conclusions Low FPED-FROH correlation estimates indicate that FPED is not the most suitable method for capturing ancient inbreeding when the pedigree does not extend back many generations and FROH should be used instead. Enriched terms (p < 0.01) suggest a strong selection for immune response. Non-overlapping islands within the lineages greatly explain the mechanism underlying selection for functionally important traits in Nellore cattle. 650 $aHomozygosity 650 $aEndogamia 650 $aGado Nelore 650 $aGenética Animal 650 $aGenoma 653 $aPadroes ROH 700 1 $aMETZGER, J. 700 1 $aLEMOS, M. V. A. de 700 1 $aSTAFUZZA, N. B. 700 1 $aKLUSKA, S. 700 1 $aOLIVIERI, B. F. 700 1 $aFEITOSA, F. L. B. 700 1 $aBERTON, M. P. 700 1 $aLOPES, F. B. 700 1 $aMUNARI, D. P. 700 1 $aLOBO, R. B. 700 1 $aMAGNABOSCO, C. de U. 700 1 $aDI CROCE, F. 700 1 $aOSTERSTOCK, J. 700 1 $aDENISE, S. 700 1 $aPEREIRA, A. S. C. 700 1 $aBALDI, F. 773 $tBMC Genomics$gv. 19, 680, 2018.
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