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 | Acesso ao texto completo restrito à biblioteca da Embrapa Arroz e Feijão. Para informações adicionais entre em contato com cnpaf.biblioteca@embrapa.br. |
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Registro Completo |
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Biblioteca(s): |
Embrapa Arroz e Feijão. |
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Data corrente: |
17/02/2016 |
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Data da última atualização: |
17/02/2016 |
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Tipo da produção científica: |
Artigo em Periódico Indexado |
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Autoria: |
MÜLLER, B. S. F.; PAPPAS JUNIOR, G. J.; VALDISSER, P. A. M. R.; COELHO, G. R. C.; MENEZES, I. P. P. de; ABREU, A. G.; BORBA, T. C. O.; SAKAMOTO, T.; BRONDANI, C.; BARROS, E. G.; VIANELLO, R. P. |
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Afiliação: |
BARBARA S. F. MÜLLER, BIOAGRO; GEORGIOS J. PAPPAS JUNIOR, UNB; PAULA ARIELLE M RIBEIRO VALDISSER, CNPAF; GESIMARIA RIBEIRO COSTA COELHO, CNPAF; IVANDILSON P. P. DE MENEZES, INSTITUTO FEDERAL GOIANO, Urutaí-GO; ALUANA GONCALVES DE ABREU, CNPAF; TEREZA CRISTINA DE OLIVEIRA BORBA, CNPAF; TETSU SAKAMOTO, UFMG; CLAUDIO BRONDANI, CNPAF; EVERALDO G. BARROS, BIOAGRO; ROSANA PEREIRA VIANELLO, CNPAF. |
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Título: |
An operational SNP panel integrated to SSR marker for the assessment of genetic diversity and population structure of the common bean. |
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Ano de publicação: |
2015 |
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Fonte/Imprenta: |
Plant Molecular Biology Reporter, v. 33, n. 6, p. 1697-1711, Dec. 2015. |
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DOI: |
10.1007/s11105-015-0866-x |
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Idioma: |
Inglês |
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Conteúdo: |
The common bean, an important source of protein and minerals for humans, complements cereals both nutritionally and as a rotation crop, supplying nitrogen and reducing soil pathogens. The aim of this study was to develop an operational SNP-based panel for common bean in order to facilitate SSR employment in genetic diversity and population structure analyses, and its use in breeding programs. A set of 88 diverse and important common bean cultivars/lines (53), landraces (33) and wild accessions (2) were genotyped. Overall, the 58 SSRs performed better at evaluating genetic diversity (Ā=7.38; He=58.7 %; PI=1.20E−45) than the 345 SNPs, of which the SSRs dinucleotides (SSR-di) were more informative (Ā=9.92; He=72.5 %; PI=3.40E−26) and a selected set of 13 SSRs (Ā=15.31/locus; He=84.5 %; PI=1.03E−19) allowed for the discrimination of all individuals. For the 345 high-quality scored SNPs a low combined PI (4.70E −119) and high PE (100 %) was obtained for the assessment of parentage and identity. The SNPs were very useful for linkage mapping in inter- (78.2 %) and intra-gene pool (17.7 %) crosses. Both markers afforded high resolution detection of inter-gene pool structure, with greater differentiation based on SNPs (K=2, FST=0.759). The SSRs-di differentiated cultivars/lines and landraces (K=3) of Mesoamerican origin. A set of 16 SSRs was selected to establish a routine and operational analysis of Genbank accessions allowing an efficient origin-based discrimination of common bean accessions. Operational genotyping panels based on SSRs and SNPs were derived, contributing to the growing integration of genomics with molecular breeding programs of the common bean. MenosThe common bean, an important source of protein and minerals for humans, complements cereals both nutritionally and as a rotation crop, supplying nitrogen and reducing soil pathogens. The aim of this study was to develop an operational SNP-based panel for common bean in order to facilitate SSR employment in genetic diversity and population structure analyses, and its use in breeding programs. A set of 88 diverse and important common bean cultivars/lines (53), landraces (33) and wild accessions (2) were genotyped. Overall, the 58 SSRs performed better at evaluating genetic diversity (Ā=7.38; He=58.7 %; PI=1.20E−45) than the 345 SNPs, of which the SSRs dinucleotides (SSR-di) were more informative (Ā=9.92; He=72.5 %; PI=3.40E−26) and a selected set of 13 SSRs (Ā=15.31/locus; He=84.5 %; PI=1.03E−19) allowed for the discrimination of all individuals. For the 345 high-quality scored SNPs a low combined PI (4.70E −119) and high PE (100 %) was obtained for the assessment of parentage and identity. The SNPs were very useful for linkage mapping in inter- (78.2 %) and intra-gene pool (17.7 %) crosses. Both markers afforded high resolution detection of inter-gene pool structure, with greater differentiation based on SNPs (K=2, FST=0.759). The SSRs-di differentiated cultivars/lines and landraces (K=3) of Mesoamerican origin. A set of 16 SSRs was selected to establish a routine and operational analysis of Genbank accessions allowing an efficient orig... Mostrar Tudo |
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Palavras-Chave: |
Diversity pattern; Genetic structure; Molecular breeding. |
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Thesagro: |
Feijão; Phaseolus vulgaris; Variação genética. |
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Categoria do assunto: |
S Ciências Biológicas |
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Marc: |
LEADER 02750naa a2200325 a 4500
001 2037381
005 2016-02-17
008 2015 bl uuuu u00u1 u #d
024 7 $a10.1007/s11105-015-0866-x$2DOI
100 1 $aMÜLLER, B. S. F.
245 $aAn operational SNP panel integrated to SSR marker for the assessment of genetic diversity and population structure of the common bean.$h[electronic resource]
260 $c2015
520 $aThe common bean, an important source of protein and minerals for humans, complements cereals both nutritionally and as a rotation crop, supplying nitrogen and reducing soil pathogens. The aim of this study was to develop an operational SNP-based panel for common bean in order to facilitate SSR employment in genetic diversity and population structure analyses, and its use in breeding programs. A set of 88 diverse and important common bean cultivars/lines (53), landraces (33) and wild accessions (2) were genotyped. Overall, the 58 SSRs performed better at evaluating genetic diversity (Ā=7.38; He=58.7 %; PI=1.20E−45) than the 345 SNPs, of which the SSRs dinucleotides (SSR-di) were more informative (Ā=9.92; He=72.5 %; PI=3.40E−26) and a selected set of 13 SSRs (Ā=15.31/locus; He=84.5 %; PI=1.03E−19) allowed for the discrimination of all individuals. For the 345 high-quality scored SNPs a low combined PI (4.70E −119) and high PE (100 %) was obtained for the assessment of parentage and identity. The SNPs were very useful for linkage mapping in inter- (78.2 %) and intra-gene pool (17.7 %) crosses. Both markers afforded high resolution detection of inter-gene pool structure, with greater differentiation based on SNPs (K=2, FST=0.759). The SSRs-di differentiated cultivars/lines and landraces (K=3) of Mesoamerican origin. A set of 16 SSRs was selected to establish a routine and operational analysis of Genbank accessions allowing an efficient origin-based discrimination of common bean accessions. Operational genotyping panels based on SSRs and SNPs were derived, contributing to the growing integration of genomics with molecular breeding programs of the common bean.
650 $aFeijão
650 $aPhaseolus vulgaris
650 $aVariação genética
653 $aDiversity pattern
653 $aGenetic structure
653 $aMolecular breeding
700 1 $aPAPPAS JUNIOR, G. J.
700 1 $aVALDISSER, P. A. M. R.
700 1 $aCOELHO, G. R. C.
700 1 $aMENEZES, I. P. P. de
700 1 $aABREU, A. G.
700 1 $aBORBA, T. C. O.
700 1 $aSAKAMOTO, T.
700 1 $aBRONDANI, C.
700 1 $aBARROS, E. G.
700 1 $aVIANELLO, R. P.
773 $tPlant Molecular Biology Reporter$gv. 33, n. 6, p. 1697-1711, Dec. 2015.
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Registro original: |
Embrapa Arroz e Feijão (CNPAF) |
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Biblioteca |
ID |
Origem |
Tipo/Formato |
Classificação |
Cutter |
Registro |
Volume |
Status |
URL |
Voltar
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Registro Completo
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Biblioteca(s): |
Embrapa Rondônia. |
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Data corrente: |
23/01/1998 |
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Data da última atualização: |
24/09/2020 |
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Tipo da produção científica: |
Comunicado Técnico/Recomendações Técnicas |
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Autoria: |
MEDRADO, M. J. S.; LISBOA, S. de M.; COSTA, J. N. M.; SOUZA, V. F. de; MENEZES, L. C. C. de. |
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Afiliação: |
MOACIR JOSÉ SALES MEDRADO, CNPF; SEBASTIÃO DE MELO LISBOA, Ministério da Agricultura e Reforma Agrária; JOSE NILTON MEDEIROS COSTA, CPAF-RO; VICTOR FERREIRA DE SOUZA, CPAF-RO; LUIZ CARLOS COELHO DE MENEZES, CPAF-RO. |
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Título: |
Avaliação do comportamento de clones de seringueira (Hevea spp.) em Porto Velho, Rondônia. |
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Ano de publicação: |
1997 |
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Fonte/Imprenta: |
Porto Velho: EMBRAPA-CPAF Rondonia, 1997. |
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Páginas: |
7 p. |
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Série: |
(EMBRAPA-CPAF Rondônia. Comunicado técnico, 129). |
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Idioma: |
Português |
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Conteúdo: |
Selecao de clones para melhoria dos sistema de exploracao da borracha, em experimento delineado em blocos ao acaso, com tres repeticoes de dezesseis clones, em covas adubadas com superfosfato triplo. A seringueira foi plantada com mudas em sacos de plastico (0,20m x 0,50m quando fechados), com dois lancamentos maduros. Os clones Fx 985, IAN 6323, Fx3844, IAN 2878 e IAN 873 foram superiores aos demais em relacao ao vigor e a precocidade de sangria. |
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Palavras-Chave: |
Amazônia Ocidental; Brasil; Comportamento; Embrapa Rondônia; Porto Velho; Porto Velho (RO); Rondonia; Rubber tree; Species; Western Amazon. |
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Thesagro: |
Aclimatação; Campo Experimental; Características Agronômicas; Clone; Comportamento de Variedade; Condição Ambiental; Espécie; Hevea; Hevea Brasiliensis; Rendimento; Seringueira. |
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Thesaurus NAL: |
Acclimation; Agronomic traits; clones; Crop yield; Environmental factors; Variety trials; yields. |
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Categoria do assunto: |
--
G Melhoramento Genético |
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URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/item/24641/1/129-fev97.pdf
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Marc: |
LEADER 01859nam a2200517 a 4500
001 1699908
005 2020-09-24
008 1997 bl uuuu u0uu1 u #d
100 1 $aMEDRADO, M. J. S.
245 $aAvaliação do comportamento de clones de seringueira (Hevea spp.) em Porto Velho, Rondônia.
260 $aPorto Velho: EMBRAPA-CPAF Rondonia$c1997
300 $a7 p.
490 $a(EMBRAPA-CPAF Rondônia. Comunicado técnico, 129).
520 $aSelecao de clones para melhoria dos sistema de exploracao da borracha, em experimento delineado em blocos ao acaso, com tres repeticoes de dezesseis clones, em covas adubadas com superfosfato triplo. A seringueira foi plantada com mudas em sacos de plastico (0,20m x 0,50m quando fechados), com dois lancamentos maduros. Os clones Fx 985, IAN 6323, Fx3844, IAN 2878 e IAN 873 foram superiores aos demais em relacao ao vigor e a precocidade de sangria.
650 $aAcclimation
650 $aAgronomic traits
650 $aclones
650 $aCrop yield
650 $aEnvironmental factors
650 $aVariety trials
650 $ayields
650 $aAclimatação
650 $aCampo Experimental
650 $aCaracterísticas Agronômicas
650 $aClone
650 $aComportamento de Variedade
650 $aCondição Ambiental
650 $aEspécie
650 $aHevea
650 $aHevea Brasiliensis
650 $aRendimento
650 $aSeringueira
653 $aAmazônia Ocidental
653 $aBrasil
653 $aComportamento
653 $aEmbrapa Rondônia
653 $aPorto Velho
653 $aPorto Velho (RO)
653 $aRondonia
653 $aRubber tree
653 $aSpecies
653 $aWestern Amazon
700 1 $aLISBOA, S. de M.
700 1 $aCOSTA, J. N. M.
700 1 $aSOUZA, V. F. de
700 1 $aMENEZES, L. C. C. de
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Registro original: |
Embrapa Rondônia (CPAF-RO) |
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