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Registro Completo |
Biblioteca(s): |
Embrapa Agricultura Digital; Embrapa Hortaliças. |
Data corrente: |
09/08/2022 |
Data da última atualização: |
11/08/2022 |
Tipo da produção científica: |
Artigo em Periódico Indexado |
Autoria: |
MARTINS, T. P.; REGO, C. M.; NAKASU, E. Y. T.; FERNANDES, F. R.; INOUE-NAGATA, A. K. |
Afiliação: |
T. P. MARTINS, UNIVERSIDADE DE BRASÍLIA; C. M. REGO, UNIVERSIDADE DE BRASÍLIA; ERICH YUKIO TEMPEL NAKASU, CNPH; FERNANDA RAUSCH FERNANDES, CNPTIA; ALICE KAZUKO INOUE NAGATA, CNPH. |
Título: |
A high viral diversity in tomato crops in Brazil is revealed by next generation sequencing analyses. |
Ano de publicação: |
2021 |
Fonte/Imprenta: |
Acta Horticulturae, v. 1316, p. 99-105, 2021. |
ISSN: |
2406-6168 |
DOI: |
10.17660/ActaHortic.2021.1316.14 |
Idioma: |
Inglês |
Notas: |
Edition of Proceedings of the VI International Symposium on Tomato Diseases: Managing Tomato Diseases in the Face of Globalization and Climate Change. |
Conteúdo: |
Tomato is planted in Brazil mainly for fresh consumption and tomato paste production. Among the various pathogens that infect tomato plants in Brazil, viruses are particularly important due to their high incidence and the resulting losses caused. Diagnosis of viral diseases usually relies on detection methods directed to known viruses and close variants, either by serology or nucleic acid hybridization/ amplification. However, the advent of next generation sequencing (NGS) facilitated a deep analysis of viral populations, which can be used for identification, assembly and discovery of new viruses. Aiming to estimate the viral diversity present in tomato crops from three states of Brazil, five composite leaf samples were analyzed using NGS. The samples referred as Braz (collected in the Federal District, 2015); Ahol, Toca1, and Toca2 (São Paulo State, 2014), and RNY2 (Minas Gerais State, 2013) were submitted to semi-purification of viral particles and RNA extraction before RNA-seq (Illumina). The reads were filtered for quality, the contigs assembled (Velvet algorithm), and submitted to MegaBLAST analysis against a virus reference sequences database. These samples were collected from plants showing symptoms such as mosaic, chlorosis, leaf curling, chlorotic spots, necrosis and stunting. Known viruses belonging to nine genera, Crinivirus, Begomovirus, Tospovirus, Tobravirus, Potyvirus, Tobamovirus, Tymovirus, Potexvirus and Cucumovirus, were detected. Potentially undescribed and unreported viruses in tomatoes, such as an amalgavirus and an ilarvirus, were also detected and are under confirmation. The conclusion was that there is a high virus diversity present in tomato plants in Brazil, making tomato production a challenge to the growers. The crinivirus, Tomato chlorosis virus, was the most frequently found within the samplings, suggesting that it is widespread in the major tomato production areas. Two begomoviruses were detected, implying that this strategy is also useful to detect viruses with a DNA genome. Finally, this technique was particularly convenient to identify the viruses coexisting in tomatoes and to find unknown viruses that may threaten the tomato production in the country. MenosTomato is planted in Brazil mainly for fresh consumption and tomato paste production. Among the various pathogens that infect tomato plants in Brazil, viruses are particularly important due to their high incidence and the resulting losses caused. Diagnosis of viral diseases usually relies on detection methods directed to known viruses and close variants, either by serology or nucleic acid hybridization/ amplification. However, the advent of next generation sequencing (NGS) facilitated a deep analysis of viral populations, which can be used for identification, assembly and discovery of new viruses. Aiming to estimate the viral diversity present in tomato crops from three states of Brazil, five composite leaf samples were analyzed using NGS. The samples referred as Braz (collected in the Federal District, 2015); Ahol, Toca1, and Toca2 (São Paulo State, 2014), and RNY2 (Minas Gerais State, 2013) were submitted to semi-purification of viral particles and RNA extraction before RNA-seq (Illumina). The reads were filtered for quality, the contigs assembled (Velvet algorithm), and submitted to MegaBLAST analysis against a virus reference sequences database. These samples were collected from plants showing symptoms such as mosaic, chlorosis, leaf curling, chlorotic spots, necrosis and stunting. Known viruses belonging to nine genera, Crinivirus, Begomovirus, Tospovirus, Tobravirus, Potyvirus, Tobamovirus, Tymovirus, Potexvirus and Cucumovirus, were detected. Potentially undescribed a... Mostrar Tudo |
Palavras-Chave: |
HTS; Next Generation Sequencing; Sequenciamento de nova geração; Virome. |
Thesagro: |
Tomate; Vírus. |
Thesaurus Nal: |
Solanum lycopersicum. |
Categoria do assunto: |
-- |
Marc: |
LEADER 03214naa a2200289 a 4500 001 2145363 005 2022-08-11 008 2021 bl uuuu u00u1 u #d 022 $a2406-6168 024 7 $a10.17660/ActaHortic.2021.1316.14$2DOI 100 1 $aMARTINS, T. P. 245 $aA high viral diversity in tomato crops in Brazil is revealed by next generation sequencing analyses.$h[electronic resource] 260 $c2021 500 $aEdition of Proceedings of the VI International Symposium on Tomato Diseases: Managing Tomato Diseases in the Face of Globalization and Climate Change. 520 $aTomato is planted in Brazil mainly for fresh consumption and tomato paste production. Among the various pathogens that infect tomato plants in Brazil, viruses are particularly important due to their high incidence and the resulting losses caused. Diagnosis of viral diseases usually relies on detection methods directed to known viruses and close variants, either by serology or nucleic acid hybridization/ amplification. However, the advent of next generation sequencing (NGS) facilitated a deep analysis of viral populations, which can be used for identification, assembly and discovery of new viruses. Aiming to estimate the viral diversity present in tomato crops from three states of Brazil, five composite leaf samples were analyzed using NGS. The samples referred as Braz (collected in the Federal District, 2015); Ahol, Toca1, and Toca2 (São Paulo State, 2014), and RNY2 (Minas Gerais State, 2013) were submitted to semi-purification of viral particles and RNA extraction before RNA-seq (Illumina). The reads were filtered for quality, the contigs assembled (Velvet algorithm), and submitted to MegaBLAST analysis against a virus reference sequences database. These samples were collected from plants showing symptoms such as mosaic, chlorosis, leaf curling, chlorotic spots, necrosis and stunting. Known viruses belonging to nine genera, Crinivirus, Begomovirus, Tospovirus, Tobravirus, Potyvirus, Tobamovirus, Tymovirus, Potexvirus and Cucumovirus, were detected. Potentially undescribed and unreported viruses in tomatoes, such as an amalgavirus and an ilarvirus, were also detected and are under confirmation. The conclusion was that there is a high virus diversity present in tomato plants in Brazil, making tomato production a challenge to the growers. The crinivirus, Tomato chlorosis virus, was the most frequently found within the samplings, suggesting that it is widespread in the major tomato production areas. Two begomoviruses were detected, implying that this strategy is also useful to detect viruses with a DNA genome. Finally, this technique was particularly convenient to identify the viruses coexisting in tomatoes and to find unknown viruses that may threaten the tomato production in the country. 650 $aSolanum lycopersicum 650 $aTomate 650 $aVírus 653 $aHTS 653 $aNext Generation Sequencing 653 $aSequenciamento de nova geração 653 $aVirome 700 1 $aREGO, C. M. 700 1 $aNAKASU, E. Y. T. 700 1 $aFERNANDES, F. R. 700 1 $aINOUE-NAGATA, A. K. 773 $tActa Horticulturae$gv. 1316, p. 99-105, 2021.
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Embrapa Hortaliças (CNPH) |
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Registros recuperados : 76 | |
2. | | TAVARES, M. L.; NAKASU, E. Y. T.; MICHEREFF FILHO, M. A begomovirus is a putative causal agent of internerval chlorosis and curling in soybean leaves. Virus Reviews & Research, Belo Horizonte, v. 20, p. 191, Oct. 2015. Supplement 1, Ref. PIV 45. Edição dos Resumos do XXVI Brazilian Congress of Virology, X Mercosur Meeting of Virology. 2015, Florianóplis.Tipo: Resumo em Anais de Congresso |
Biblioteca(s): Embrapa Hortaliças. |
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6. | | SOUZA, T. A. de; NAKASU, E. Y. T.; VARGAS, J. R.; INOUE-NAGATA, A. K. Aplicação tópica de moléculas de RNA de fita dupla visando o gene do nucleocapsídeo confere proteção contra groundnut ringspost virus. In: CONGRESSO BRASILEIRO DE FITOPATOLOGIA, 53., Brasília, DF, 2023. Anais...Brasília, DF: Sociedade Brasileira de Fitopatologia, 2023. p. 704.Tipo: Resumo em Anais de Congresso |
Biblioteca(s): Embrapa Hortaliças. |
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7. | | CATELAN, R. C.; NAKASU, E. Y. T.; VIEIRA, D. L. M.; CIAMPI, A. V.; SCARIOT, A. Análise da variabilidade genética de cerejeira Amburana cearensis utilizando marcador molecular rapd. ENCONTRO DO TALENTO ESTUDANTIL DA EMBRAPA RECURSOS GENETICOS E BIOTECNOLOGIA, 8., 2003, Brasília, DF. Anais: resumos dos trabalhos. Brasília, DF: Embrapa Recursos Genéticos e Biotecnologia, 2003. p. 61Biblioteca(s): Embrapa Recursos Genéticos e Biotecnologia. |
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8. | | REGO, C. M.; NAKASU, E. Y. T.; INOUE-NAGATA, A. K. Begomovirus diversity in resistant and susceptible tomato plants. Virus Reviews and Research, Belo Horizonte, v. 20, p. 192, 2015. Supplement 1, ref. PIV 48. Edição dos Resumos do XXVI Brazilian Congress of Virology, X Mercour Meeting of Virology, 2015, Florianópolis.Tipo: Resumo em Anais de Congresso |
Biblioteca(s): Embrapa Hortaliças. |
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10. | | FRAGOSO, R. da R.; NAKASU, E. Y. T.; ROCHA, T. L.; ROSA, A. J. de M. Genômica funcional. In: FALEIRO, F. G.; ANDRADE, S. R. M. de; REIS JUNIOR, F. B. dos. (Ed.). Biotecnologia: estado da arte e aplicações na agropecuária. Planaltina, DF: Embrapa Cerrados, 2011. 729 p. il. Color. p. 143-173Tipo: Capítulo em Livro Técnico-Científico |
Biblioteca(s): Embrapa Cerrados; Embrapa Recursos Genéticos e Biotecnologia. |
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11. | | NAKASU, E. Y. T.; FIRMINO, A. A. P.; DIAS, S. C.; GROSSI-de-SÁ, M. F. Identificação de receptores do bicudo do algodoeiro (Anthonomus grandis) para toxinas cry. In : ENCONTRO DO TALENTO ESTUDANTIL DA EMBRAPA RECURSOS GENÉTICOS E BIOTECNOLOGIA, 12., 2007, Brasília, DF. Anais: resumos dos trabalhos. Brasília, DF: Embrapa Recursos Genéticos e Biotecnologia, 2007. p. 71.Tipo: Resumo em Anais de Congresso |
Biblioteca(s): Embrapa Recursos Genéticos e Biotecnologia. |
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12. | | LIMA, M. F.; RIBEIRO, S. da G.; NAGATA, A. K. I.; NAKASU, E. Y. T. Identification of a potatoinfecting begomovirus in the central region of Brazil. Virus Reviews and Research, v. 20, n. 2, p. 145, 2016. Edição dos resumos do XXVII Brazilian Congress of Virology & XI Mercosur Meeting of Virology, Pirienópolis, GO, 2016. Na publicação: Inoue Nagata, A. K. Resumo PIV239.Tipo: Resumo em Anais de Congresso |
Biblioteca(s): Embrapa Hortaliças. |
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14. | | SOUZA, T. A. de; NAKASU, E. Y. T.; VARGAS, J. R.; INOUE-NAGATA, A. K. Topical application of double-stranded RNA molecules targeting the nucleocapsid gene confers protection against groundnut ringspot virus. In: CONGRESSO BRASILEIRO DE FITOPATOLOGIA, 53., 2023, Brasília, DF, 2023. Anais 2023. Brasília, DF: Sociedade Brasileira de Fitopatologia, 2023. p. 704. Resumo.Tipo: Resumo em Anais de Congresso |
Biblioteca(s): Embrapa Hortaliças. |
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17. | | LIMA, M. F.; RIBEIRO, S. da G.; NAGATA, A. K. I.; NAKASU, E. Y. T. Identification of a potatoinfecting begomovirus in the central region of Brazil. Virus Reviews and Research, v. 20, n. 2, p. 145, 2016. Edição dos resumos do XXVII Brazilian Congress of Virology & XI Mercosur Meeting of Virology, Pirienópolis, GO, 2016. Resumo PIV239.Tipo: Resumo em Anais de Congresso |
Biblioteca(s): Embrapa Recursos Genéticos e Biotecnologia. |
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Registros recuperados : 76 | |
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