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Registro Completo |
Biblioteca(s): |
Embrapa Milho e Sorgo. |
Data corrente: |
23/01/2006 |
Data da última atualização: |
29/05/2018 |
Tipo da produção científica: |
Artigo em Periódico Indexado |
Autoria: |
MOTA, F. F. da; GOMES, E. A.; PAIVA, E.; SELDIN, L. |
Afiliação: |
ELIANE APARECIDA GOMES, CNPMS; EMBRAPA-CNPMS. |
Título: |
Assessment of the diversity of Paenibacillus species in environmental samples by a novel rpoB-based PCR-DGGE method. |
Ano de publicação: |
2005 |
Fonte/Imprenta: |
FEMS Microbiology Ecology, Amsterdam, v. 53, n. 2, p. 317-328, 2005. |
Idioma: |
Inglês |
Conteúdo: |
A specific PCR system based on the gene encoding the RNA polymerase beta subunit, rpoB, was developed for amplification and denaturing gradient gel electrophoresis (DGGE) fingerprinting of Paenibacillus communities in environmental samples. This gene has been previously proven to be a powerful identification tool for the discrimination of species within the genus Paenibacillus and could avoid the limitations of 16S rRNA-based phylogenetic analysis. Initially, the PCR system based on universal rpoB primers were used to amplify DNAs of different Paenibacillus species. A new reverse primer (rpoBPAEN) was further designed based on an insertion of six nucleotides in the Paenibacillus sequences analyzed. This semi-nested PCR system was evaluated for specificity using DNAs isolated from 27 Paenibacillus species belonging to different 16S rRNA-based phylogenetic groups and seven non-Paenibacillus species. The non-Paenibacillus species were not amplified using this PCR approach and one group of Paenibacillus species consisting of strains without the six-base insert also were not amplified; these latter strains were found to be distinct based on 16S rRNA gene phylogeny. In addition, a clone library was generated from the rpoB fragments amplified from two Brazilian soil types (Cerrado and Forest) and all 62 clones sequenced were closely related to one of the 22 sequences from Paenibacillus previously obtained in this study. To assess the diversity of Paenibacillus species in Cerrado and Forest soils and in the rhizosphere of different cultivars of maize, a PCR-DGGE system was used. The Paenibacillus DGGE fingerprints showed a clear distinction between communities of Paenibacillus in Forest and Cerrado soils and rhizosphere samples clustered along Cerrado soil. Profiles of cultivars CMS22 and CMS36 clustered together, with only 53% of similarity to CMS11 and CMS04. The results presented here demonstrate the potential use of the rpoB-based Paenibacillus-specific PCR-DGGE method for studying the diversity of Paenibacillus populations in natural environments. MenosA specific PCR system based on the gene encoding the RNA polymerase beta subunit, rpoB, was developed for amplification and denaturing gradient gel electrophoresis (DGGE) fingerprinting of Paenibacillus communities in environmental samples. This gene has been previously proven to be a powerful identification tool for the discrimination of species within the genus Paenibacillus and could avoid the limitations of 16S rRNA-based phylogenetic analysis. Initially, the PCR system based on universal rpoB primers were used to amplify DNAs of different Paenibacillus species. A new reverse primer (rpoBPAEN) was further designed based on an insertion of six nucleotides in the Paenibacillus sequences analyzed. This semi-nested PCR system was evaluated for specificity using DNAs isolated from 27 Paenibacillus species belonging to different 16S rRNA-based phylogenetic groups and seven non-Paenibacillus species. The non-Paenibacillus species were not amplified using this PCR approach and one group of Paenibacillus species consisting of strains without the six-base insert also were not amplified; these latter strains were found to be distinct based on 16S rRNA gene phylogeny. In addition, a clone library was generated from the rpoB fragments amplified from two Brazilian soil types (Cerrado and Forest) and all 62 clones sequenced were closely related to one of the 22 sequences from Paenibacillus previously obtained in this study. To assess the diversity of Paenibacillus species in Cerrado an... Mostrar Tudo |
Palavras-Chave: |
Cerrado soil; Diversity; Forest soil; Maize rhizosphere; PCR-DGGE; RpoB. |
Thesaurus Nal: |
Paenibacillus. |
Categoria do assunto: |
-- |
Marc: |
LEADER 02787naa a2200241 a 4500 001 1489140 005 2018-05-29 008 2005 bl uuuu u00u1 u #d 100 1 $aMOTA, F. F. da 245 $aAssessment of the diversity of Paenibacillus species in environmental samples by a novel rpoB-based PCR-DGGE method.$h[electronic resource] 260 $c2005 520 $aA specific PCR system based on the gene encoding the RNA polymerase beta subunit, rpoB, was developed for amplification and denaturing gradient gel electrophoresis (DGGE) fingerprinting of Paenibacillus communities in environmental samples. This gene has been previously proven to be a powerful identification tool for the discrimination of species within the genus Paenibacillus and could avoid the limitations of 16S rRNA-based phylogenetic analysis. Initially, the PCR system based on universal rpoB primers were used to amplify DNAs of different Paenibacillus species. A new reverse primer (rpoBPAEN) was further designed based on an insertion of six nucleotides in the Paenibacillus sequences analyzed. This semi-nested PCR system was evaluated for specificity using DNAs isolated from 27 Paenibacillus species belonging to different 16S rRNA-based phylogenetic groups and seven non-Paenibacillus species. The non-Paenibacillus species were not amplified using this PCR approach and one group of Paenibacillus species consisting of strains without the six-base insert also were not amplified; these latter strains were found to be distinct based on 16S rRNA gene phylogeny. In addition, a clone library was generated from the rpoB fragments amplified from two Brazilian soil types (Cerrado and Forest) and all 62 clones sequenced were closely related to one of the 22 sequences from Paenibacillus previously obtained in this study. To assess the diversity of Paenibacillus species in Cerrado and Forest soils and in the rhizosphere of different cultivars of maize, a PCR-DGGE system was used. The Paenibacillus DGGE fingerprints showed a clear distinction between communities of Paenibacillus in Forest and Cerrado soils and rhizosphere samples clustered along Cerrado soil. Profiles of cultivars CMS22 and CMS36 clustered together, with only 53% of similarity to CMS11 and CMS04. The results presented here demonstrate the potential use of the rpoB-based Paenibacillus-specific PCR-DGGE method for studying the diversity of Paenibacillus populations in natural environments. 650 $aPaenibacillus 653 $aCerrado soil 653 $aDiversity 653 $aForest soil 653 $aMaize rhizosphere 653 $aPCR-DGGE 653 $aRpoB 700 1 $aGOMES, E. A. 700 1 $aPAIVA, E. 700 1 $aSELDIN, L. 773 $tFEMS Microbiology Ecology, Amsterdam$gv. 53, n. 2, p. 317-328, 2005.
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Embrapa Milho e Sorgo (CNPMS) |
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Registros recuperados : 13 | |
3. | | MOTA, F. F.; GOMES, E. A.; MARRIEL, I. E.; PAIVA, E.; SELDIN, L. Análise das comunidades bacterianas presentes nas rizosferas de variedades de milho sensíveis e tolerantes ao alumínio plantadas em solo de cerrado. In: CONGRESSO NACIONAL DE MILHO E SORGO, 26.; SIMPÓSIO BRASILEIRO SOBRE A LAGARTA-DO-CARTUCHO, SPODOPTERA FRUGIPERDA, 2.; SIMPÓSIO SOBRE COLLETOTRICHUM GRAMINICOLA, 1., 2006, Belo Horizonte, Inovação para sistemas integrados de produção: trabalhos apresentados. [Sete Lagoas]: ABMS, 2006. 1 CD-ROM.Tipo: Artigo em Anais de Congresso |
Biblioteca(s): Embrapa Milho e Sorgo. |
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5. | | MOTA, F. F.; GOMES, E. A.; MARRIEL, I. E.; PAIVA, E.; SELDIN, L. Efeito da calagem do solo de cerrado na estrutura de comunidades bacterianas e fungicas presentes na rizosfera de linhagens de milho (Zea mays L.) sensiveis e tolerantes ao alumínio. In: CONGRESSO BRASILEIRO DE MICROBIOLOGIA, 24.; SIMPÓSIO BRASILEIRO DE MICROBACTÉRIAS, 12.; SIMPÓSIO DE COLEÇÕES DE CULTURA, 2.; ENCONTRO DE ENSINO EM MICROBIOLOGIA, 4., 2007, Brasília, DF. Anais. [São Paulo]: SBM, 2007. 1 CD-ROM.Tipo: Resumo em Anais de Congresso |
Biblioteca(s): Embrapa Milho e Sorgo. |
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7. | | MOTA, F. F. da; GOMES, E. A.; PAIVA, E.; ROSADO, A. S.; SELDIN, L. Use of rpoB gene analysis for identification of nitrogen-fixing Paenibacillus species as an alternative to the 16S rRNA gene. Letters in Applied Microbiology, Oxford, v. 39, n. 1, p. 34-40, 2004.Tipo: Artigo em Periódico Indexado |
Biblioteca(s): Embrapa Milho e Sorgo. |
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8. | | MOTA, F. F. da; NOBREGA, F. F.; MARRIEL, I. E.; PAIVA, E.; SELDIN, L. Genetic diversity of Paenibacillus polymyxa populations isolated from the rhizosphere of four cultivars of maize (Zea mays) planted in cerrado soil. Applied Soil Ecology, Amsterdam, v. 20, n. 2, p. 119-132, 2002.Tipo: Artigo em Periódico Indexado |
Biblioteca(s): Embrapa Milho e Sorgo. |
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10. | | MOTA, F. F. da; GOMES, E.; MARRIEL, I.; PAIVA, E.; SELDIN, L. Molecular ecology based on 16S rDNA of bacterial communities from rhizospheres of sensitive and tolerant maize varieties under aluminum-stressing and non-stressing conditions thirty and ninety days after sowing. In: REUNIÃO BRASILEIRA DE FERTILIDADE DO SOLO E NUTRIÇÃO DE PLANTAS, 27.; REUNIÃO BRASILEIRA SOBRE MICORRIZAS, 11.; SIMPÓSIO BRASILEIRO DE MICROBIOLOGIA DO SOLO, 9.; REUNIÃO BRASILEIRA DE BIOLOGIA DO SOLO, 6., 2006, Bonito. Fertbio 2006: a busca das raízes: anais. Dourados: Embrapa Agropecuária Oeste, 2006. 1 CD-ROM. (Embrapa Agropecuária Oeste. Documentos, 82).Tipo: Artigo em Anais de Congresso / Nota Técnica |
Biblioteca(s): Embrapa Milho e Sorgo. |
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11. | | COELHO, M. R. R.; MOTA, F. F.; PAIVA, E.; MARRIEL, I. E.; ROSADO, A. S.; SELDIN, L.; CARNEIRO, N. P. Diversidade de Paenibacillus spp. na rizosfera de quatro cultivares de sorgo plantados em solo de cerrado sob condições contrastantes de nitrogênio. In: CONGRESSO NACIONAL DE MILHO E SORGO, 26.; SIMPÓSIO BRASILEIRO SOBRE A LAGARTA-DO-CARTUCHO, SPODOPTERA FRUGIPERDA, 2.; SIMPÓSIO SOBRE COLLETOTRICHUM GRAMINICOLA, 1., 2006, Belo Horizonte. Inovação para sistemas integrados de produção: trabalhos apresentados. [Sete Lagoas]: ABMS, 2006. 1 CD-ROM.Tipo: Artigo em Anais de Congresso |
Biblioteca(s): Embrapa Milho e Sorgo. |
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12. | | COELHO, M. R. R.; MOTA, F. F. da; CARNEIRO, N. P.; MARRIEL, I. E.; PAIVA, E.; ROSADO, A. S.; SELDIN, L. Diversity of Paenibacillus spp. in the rhizosphere of four sorghum (Sorghum bicolor) cultivars sown with two contrasting levels of nitrogen fertilizer assessed by rpoB-Based PCR-DGGE and sequencing analysis. Journal of Microbiology and Biotechnology, v. 17, n. 5, p. 753-760, 2007.Tipo: Artigo em Periódico Indexado | Circulação/Nível: Internacional - A |
Biblioteca(s): Embrapa Milho e Sorgo. |
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13. | | COTTA, S. R; MOTA, F. F. da; TUPINAMBÁ, G.; ISHIDA, K.; ROZENTAL, S.; SILVA, D. O. e; SILVA, A. J. R. da; BIZZO, H. R.; ALVIANO, D. S.; ALVIANO, C. S.; SELDIN, L. Antimicrobial activity of Paenibacillus kribbensis POC 115 against the dermatophyte Trichophyton rubrum. World Journal of Microbiology and Biotechnology, v. 28, n. 3, p. 953-962, 2012.Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 2 |
Biblioteca(s): Embrapa Agroindústria de Alimentos. |
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Registros recuperados : 13 | |
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Nenhum registro encontrado para a expressão de busca informada. |
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