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Registro Completo |
Biblioteca(s): |
Embrapa Agricultura Digital; Embrapa Recursos Genéticos e Biotecnologia. |
Data corrente: |
02/12/2010 |
Data da última atualização: |
07/02/2023 |
Tipo da produção científica: |
Resumo em Anais de Congresso |
Autoria: |
NODA, R. W.; GUIMARAES, C. T.; GOMES, E. A.; CARNEIRO, N. P.; LANA, U. G. de P.; MAGALHAES, J. V. de; COSTA, M. M. do C.; SILVA, F. R.; BRAMMER, S. P.; LÂNGARO, N. C.; CARVALHO, L. J. C. B.; BEVITORI, R.; PURCINO, A. A. C. |
Afiliação: |
ROBERTO WILLIANS NODA, CNPMS; CLAUDIA TEIXEIRA GUIMARAES, CNPMS; ELIANE APARECIDA GOMES, CNPMS; NEWTON PORTILHO CARNEIRO, CNPMS; UBIRACI GOMES DE PAULA LANA, CNPMS; JURANDIR VIEIRA DE MAGALHAES, CNPMS; MARCOS MOTA DO CARMO COSTA, CENARGEN; FELIPE RODRIGUES DA SILVA, CNPTIA; SANDRA PATUSSI BRAMMER, CNPT; LÂNGARO, N. C. UPF; LUIZ JOAQUIM CASTELO B CARVALHO, CENARGEN; ROSANGELA BEVITORI, CNPAF; ANTONIO ALVARO CORSETTI PURCINO, CNPMS. |
Título: |
Aluminum-induced genes in grass species. |
Ano de publicação: |
2010 |
Fonte/Imprenta: |
In: INTERNATIONAL CONFERENCE OF THE BRAZILIAN ASSOCIATION FOR BIOINFORMATICS AND COMPUTATIONAL BIOLOGY, 6., 2010, Ouro Preto. Abstracts... [S.l.: s.n.], 2010. |
Páginas: |
p. 185. |
Idioma: |
Inglês |
Notas: |
AB3C X-meeting 2010. |
Conteúdo: |
The toxicity caused by aluminum (Al), intrinsic to acid soils, influences negatively the stability of crop production. Under toxic levels of Al, plant roots paralyze their development and become unable to explore the deeper layers of the soil, affecting nutrient and water acquisition and reducing crop yield. This study aimed to identify genes associated with Al tolerance mechanisms in grasses, using cDNA and subtractive libraries derived from roots of maize, rice, sorghum, oat, barley, wheat and brachiaria tolerant genotypes submitted to critical levels of Al in nutrient solution. We analyzed 5,304 sequences, of which 3,869 were considered of good quality (Phred score: 13 and minimum number of bases: 70). Additionally, 391 sequences without quality scores that showed similarities in BLASTn against public database sequences were added to the clustering process. A total of 4,260 quality sequences were clustered with CAP3, generating 567 contigs and 1,009 singletons. The contigs ranged from 2 to 92 sequences. BLAST2GO was used to determine the putative roles and ontologies of the sequences combining results from BLAST, InterProScan, Gene Ontology (GO), and KEGG metabolic pathways. Out of the 1,576 unique sequences (contigs + singletons), 953 received GO terms by BLAST2GO annotation. Al tolerance mechanisms are divided into two main types: (1) exclusion, which prevent the Al uptake into the cell; and (2) simplastic, that immobilize or neutralize the Al in specific locations inside the cells. Therefore, we focus our initial search in sequences associated with transport, biotic and abiotic stress, and membrane components. Next we searched for sequences related to organic acids compounds such as malate, citrate and oxalate. The "transport" term appears under GO terms in 113 unique sequences, "membrane" in 335, and "stress" in 45, while the combination of "transport and membrane" were found in 82, "membrane and stress" in 19, "transport and stress" in nine, and "stress, transport and membrane" in four. For organic compounds, "malate" appears under GO terms in four unique sequences, "citrate" in three and "oxalate" does not appear. Using KEGG, 12 sequences showed similarity with nine enzymes of the TCA cycle. A large number of genes were induced under Al stress in grass roots, including genes commonly found in other abiotic stresses. This strategy will allow us to identify Al tolerance mechanisms common to several grass species. Supported by: FAPEMIG (NuBio - TCT 12.009/09), McKnight, Embrapa, GCP, CNPq MenosThe toxicity caused by aluminum (Al), intrinsic to acid soils, influences negatively the stability of crop production. Under toxic levels of Al, plant roots paralyze their development and become unable to explore the deeper layers of the soil, affecting nutrient and water acquisition and reducing crop yield. This study aimed to identify genes associated with Al tolerance mechanisms in grasses, using cDNA and subtractive libraries derived from roots of maize, rice, sorghum, oat, barley, wheat and brachiaria tolerant genotypes submitted to critical levels of Al in nutrient solution. We analyzed 5,304 sequences, of which 3,869 were considered of good quality (Phred score: 13 and minimum number of bases: 70). Additionally, 391 sequences without quality scores that showed similarities in BLASTn against public database sequences were added to the clustering process. A total of 4,260 quality sequences were clustered with CAP3, generating 567 contigs and 1,009 singletons. The contigs ranged from 2 to 92 sequences. BLAST2GO was used to determine the putative roles and ontologies of the sequences combining results from BLAST, InterProScan, Gene Ontology (GO), and KEGG metabolic pathways. Out of the 1,576 unique sequences (contigs + singletons), 953 received GO terms by BLAST2GO annotation. Al tolerance mechanisms are divided into two main types: (1) exclusion, which prevent the Al uptake into the cell; and (2) simplastic, that immobilize or neutralize the Al in specific locations insi... Mostrar Tudo |
Palavras-Chave: |
Tolerância a alumínio. |
Thesaurus Nal: |
Aluminum; genes; Genetics; Sequence analysis. |
Categoria do assunto: |
-- |
URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/item/25479/1/Aluminum-induced.pdf
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Marc: |
LEADER 03559nam a2200337 a 4500 001 1878196 005 2023-02-07 008 2010 bl uuuu u01u1 u #d 100 1 $aNODA, R. W. 245 $aAluminum-induced genes in grass species.$h[electronic resource] 260 $aIn: INTERNATIONAL CONFERENCE OF THE BRAZILIAN ASSOCIATION FOR BIOINFORMATICS AND COMPUTATIONAL BIOLOGY, 6., 2010, Ouro Preto. Abstracts... [S.l.: s.n.]$c2010 300 $ap. 185. 500 $aAB3C X-meeting 2010. 520 $aThe toxicity caused by aluminum (Al), intrinsic to acid soils, influences negatively the stability of crop production. Under toxic levels of Al, plant roots paralyze their development and become unable to explore the deeper layers of the soil, affecting nutrient and water acquisition and reducing crop yield. This study aimed to identify genes associated with Al tolerance mechanisms in grasses, using cDNA and subtractive libraries derived from roots of maize, rice, sorghum, oat, barley, wheat and brachiaria tolerant genotypes submitted to critical levels of Al in nutrient solution. We analyzed 5,304 sequences, of which 3,869 were considered of good quality (Phred score: 13 and minimum number of bases: 70). Additionally, 391 sequences without quality scores that showed similarities in BLASTn against public database sequences were added to the clustering process. A total of 4,260 quality sequences were clustered with CAP3, generating 567 contigs and 1,009 singletons. The contigs ranged from 2 to 92 sequences. BLAST2GO was used to determine the putative roles and ontologies of the sequences combining results from BLAST, InterProScan, Gene Ontology (GO), and KEGG metabolic pathways. Out of the 1,576 unique sequences (contigs + singletons), 953 received GO terms by BLAST2GO annotation. Al tolerance mechanisms are divided into two main types: (1) exclusion, which prevent the Al uptake into the cell; and (2) simplastic, that immobilize or neutralize the Al in specific locations inside the cells. Therefore, we focus our initial search in sequences associated with transport, biotic and abiotic stress, and membrane components. Next we searched for sequences related to organic acids compounds such as malate, citrate and oxalate. The "transport" term appears under GO terms in 113 unique sequences, "membrane" in 335, and "stress" in 45, while the combination of "transport and membrane" were found in 82, "membrane and stress" in 19, "transport and stress" in nine, and "stress, transport and membrane" in four. For organic compounds, "malate" appears under GO terms in four unique sequences, "citrate" in three and "oxalate" does not appear. Using KEGG, 12 sequences showed similarity with nine enzymes of the TCA cycle. A large number of genes were induced under Al stress in grass roots, including genes commonly found in other abiotic stresses. This strategy will allow us to identify Al tolerance mechanisms common to several grass species. Supported by: FAPEMIG (NuBio - TCT 12.009/09), McKnight, Embrapa, GCP, CNPq 650 $aAluminum 650 $agenes 650 $aGenetics 650 $aSequence analysis 653 $aTolerância a alumínio 700 1 $aGUIMARAES, C. T. 700 1 $aGOMES, E. A. 700 1 $aCARNEIRO, N. P. 700 1 $aLANA, U. G. de P. 700 1 $aMAGALHAES, J. V. de 700 1 $aCOSTA, M. M. do C. 700 1 $aSILVA, F. R. 700 1 $aBRAMMER, S. P. 700 1 $aLÂNGARO, N. C. 700 1 $aCARVALHO, L. J. C. B. 700 1 $aBEVITORI, R. 700 1 $aPURCINO, A. A. C.
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Registro original: |
Embrapa Recursos Genéticos e Biotecnologia (CENARGEN) |
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Registros recuperados : 20 | |
2. | | MASTELARO, A. P.; COSTA, G. F.; ALVES, F. V.; ALVES, G. F.; AMARAL, P. N. C. Avaliação do microclima em diferentes arranjos de sistemas em integração lavoura-pecuária-floresta. In: JORNADA CIENTÍFICA EMBRAPA GADO DE CORTE, 14., 2018, Campo Grande - MS. [Resumos dos trabalhos]. Brasília, DF, Embrapa, 2018 115 p. (Embrapa Gado de Corte. Documentos, 258). P. 24-25Tipo: Resumo em Anais de Congresso |
Biblioteca(s): Embrapa Gado de Corte. |
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3. | | AJALA, NATALIA; ALVES, F. V.; KARVATTE JÚNIOR, N.; MASTELARO, A. P; ALVES, G. F. Parâmetros microclimáticos em distintas alturas de avaliação. In: JORNADA CIENTÍFICA EMBRAPA GADO DE CORTE, 11., 2015, Campo Grande, MS. Anais... Campo Grande: Embrapa Gado de Corte, 2015. 114 p. (Embrapa Gado de Corte. Documentos, 213).Tipo: Resumo em Anais de Congresso |
Biblioteca(s): Embrapa Gado de Corte. |
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4. | | MASTELARO, A. P.; ALVES, F. V.; KARVATTE JUNIOR, N.; NICACIO, A. C.; ZOPOLLATTO, M. Sistemas silvipastoris e sua contribuição para mitigação do estresse térmico animal. In: JORNADA CIENTÍFICA EMBRAPA GADO DE CORTE, 15., 2019, Campo Grande, MS. [Resumos dos trabalhos...]. Brasília, DF: Embrapa, 2019 80 p. (Embrapa Gado de Corte. Documentos, 264). Comitê Organizador: Marlene de Barros Coelho; Lenita Ramires dos Santos; Rodrigo Carvalho Alva; Lucimara Chiari; Thais Basso Amaral. p. 14-15Tipo: Resumo em Anais de Congresso |
Biblioteca(s): Embrapa Gado de Corte. |
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5. | | FONSECA, D. R.; PEREIRA, S. R.; MASTELARO, A. P.; ALVES, F. V.; LAURA, V. A.; POTT, A. Área de sombra e bloqueio de radiação de copas de espécies nativas do Cerrado em arboreto. In: CONFERÊNCIA BRASILEIRA DE RESTAURAÇÃO ECOLÓGICA, 2.; SIMPÓSIO BRASILEIRO SOBRE TECNOLOGIA DE SEMENTES FLORESTAIS, 10., 2018. Anais... Belo Horizonte, MG. / (Coord.). Jerônimo Boelsums Barreto Sansevero; Juliana Müller Freire. ? Minas Gerais, 2018. (Informativo Abrates, v. 28, n. 2). p. 77Tipo: Resumo em Anais de Congresso |
Biblioteca(s): Embrapa Gado de Corte. |
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6. | | FONSECA, D.; PEREIRA, S.; LAURA, V. A.; MASTELARO, A. P.; ALVES, F. V.; ALMEIDA, R. G. de. Área de sombra e microclima sob a copa de árvores do Cerrado para sistemas silvipastoris. Pesquisa Florestal Brasileira, Colombo, v. 39, (nesp), e201902043, 2019. p. 298 Edição especial dos resumos do IUFRO World Congress, 25., 2019, Curitiba.Tipo: Resumo em Anais de Congresso |
Biblioteca(s): Embrapa Gado de Corte. |
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7. | | FONSECA, D.; PEREIRA, S.; LAURA, V. A.; MIRANDA, C.; MASTELARO, A. P.; ALVES, F. V.; ALMEIDA, R. G. de. Crescimento de árvores nativas de cerrado com potencial de uso na arborização de pastagens. Pesquisa Florestal Brasileira, Colombo, v. 39, (nesp), e201902043, 2019. Edição especial dos resumos do IUFRO World Congress, 25., 2019, Curitiba.Tipo: Resumo em Anais de Congresso |
Biblioteca(s): Embrapa Gado de Corte. |
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8. | | FONSECA, D. R. da; LAURA, V. A.; PEREIRA, S. R.; MASTELARO, A. P.; ALVES, F. V.; POTT, A. Microclima sob a copa de espécies arbóreas nativas do cerrado em arboreto. In: JORNADA CIENTÍFICA EMBRAPA GADO DE CORTE, 14., 2018, Campo Grande - MS. [Resumos dos trabalhos]. Brasília, DF, Embrapa, 2018 115 p. (Embrapa Gado de Corte. Documentos, 258). P. 40-41Tipo: Resumo em Anais de Congresso |
Biblioteca(s): Embrapa Gado de Corte. |
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9. | | MASTELARO, A. P.; ALVES, F. V.; ALVES, G. F.; ALMEIDA, R. G. de; LAURA, V. A.; ZOPOLLATTO, M. Índice de temperatura globo e umidade em sistemas de integração no cerrado. Pesquisa Florestal Brasileira, Colombo, v. 39, (nesp), e201902043, 2019. p. 289-290 Edição especial dos resumos do IUFRO World Congress, 25., 2019, Curitiba.Tipo: Resumo em Anais de Congresso |
Biblioteca(s): Embrapa Gado de Corte. |
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10. | | ALVES, F. V.; KARVATTE JUNIOR, N.; MASTELARO, A. P.; MIYAGI, E. S.; MENEZES, G. R. de O.; OLIVEIRA, C. C.; BUNGENSTAB, D. J. Correlation between physiological parameters and thermal infrared emissions from free ranging cattle. In: INTERNATIONAL SYMPOSIUM ON GREENHOUSE GASES IN AGRICULTURE, 2., 2016, Campo Grande, MS. Proceedings... Brasília, DF: Embrapa, 2016. 502 p. (Embrapa Gado de Corte. Documentos, 216). Coordenador Roberto Giolo de Almeida. II SIGEE p. 126-129Tipo: Artigo em Anais de Congresso |
Biblioteca(s): Embrapa Gado de Corte. |
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12. | | LAURA, V. A.; FONSECA, D. R. da; PEREIRA, S. R.; FERREIRA, A. D.; ASSIS, T. E. de; ALVES, F. V.; MASTELARO, A. P. Microclima sob a copa de espécies arbóreas nativas do Cerrado em arboreto. In: ENCONTRO DE ATIVIDADES CIENTÍFICAS, 21., 2018, Londrina. Anais... Londrina: UNOPAR Editora, 2018.Tipo: Artigo em Anais de Congresso |
Biblioteca(s): Embrapa Gado de Corte. |
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13. | | KARVATTE JUNIOR, N.; ALVES, F. V.; ALMEIDA, R. G. de; MIYAGI, E. S.; RAMOS, C. E. C. de O.; BARRTO, C. D.; MASTELARO, A. P.; FERRARI, B. Multiple factor analysis to identify correlated variable among microclimate, thermal comfort and infrared thermography in agroforestry systems. In: CONGRESO INTERNACIONAL DE SISTEMAS SILVOPASTORILES 10., 2019, Asunción. Por una produción sostenible: Libro de Actas. Asunción: CIPAV, 2019. p. 56-64Tipo: Artigo em Anais de Congresso |
Biblioteca(s): Embrapa Gado de Corte. |
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14. | | FONSECA, D. R. da; LAURA, V. A.; PEREIRA, S. R.; MASTELARO, A. P.; ALVES, F. V.; FERREIRA, A. D.; ASSIS, T. E. de. Predição da configuração de sombra de espécies arbóreas nativas do Cerrado em arboreto. In: ENCONTRO DE ATIVIDADES CIENTÍFICAS, 21., 2018, Londrina. Anais... Londrina: UNOPAR Editora, 2018.Tipo: Resumo em Anais de Congresso |
Biblioteca(s): Embrapa Gado de Corte. |
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16. | | ALVES, F. V.; COSTA, G. F. da; MASTELARO, A. P.; AMARAL, P. N. C. do; ALVES, G. F.; LAURA, V. A.; ALMEIDA, R. G. de. Influência do sombreamento natural no conforto térmico animal em pastagens do Mato Grosso do Sul. Pesquisa Florestal Brasileira, Colombo, v. 39, (nesp), e201902043, 2019. p. 289 Edição especial dos resumos do IUFRO World Congress, 25., 2019, Curitiba.Tipo: Resumo em Anais de Congresso |
Biblioteca(s): Embrapa Gado de Corte. |
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17. | | ALVES, F. V.; FERRARI, B.; MENEZES, G. R. de O.; SILVA, E. V. C. e; KARVATTE JUNIOR, N.; MASTELARO, A. P.; FRANCO, R. A. L.; BARRETO, C. D. Thermography for evaluation of heat stress in beef cattle. In: CONGRESSO BRASILEIRO DE ZOOTECNIA, 26., 2016, Santa Maria, RS. Cinquenta anos da Zootecnia no Brasil. anais... Vitória: Associação Brasileira de Zootecnistas, 2016.Tipo: Resumo em Anais de Congresso |
Biblioteca(s): Embrapa Gado de Corte. |
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18. | | KARVATTE JUNIOR, N.; MIYAGI, E. S.; OLIVEIRA, C. C. de; MASTELARO, A. P.; COELHO, F. de A.; SILVA, G. B. S. da; BUNGENSTAB, D. J.; ALVES, F. V. Spatiotemporal variations on infrared temperature as a thermal comfort indicator for cattle under agroforestry systems. Journal of Thermal Biology, v. 97, article 102871, 2021.Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 2 |
Biblioteca(s): Embrapa Meio Ambiente. |
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19. | | ALMEIDA, R. G. de; ALMEIDA, E, M.; GOMES, R. da C.; ALVES, F. V.; LAURA, V. A.; MACEDO, M. C. M.; COSTA, G. F.; MASTELARO, A. P.; BUNGENSTAB, D. J. Cattle production in silvopastoral systems compared to monoculture pasture in the Brazilian Cerrado. In: CONGRESO INTERNACIONAL DE SISTEMAS SILVOPASTORILES 10., 2019, Asunción. Por una produción sostenible: Libro de Actas. Asunción: CIPAV, 2019. p. 150-158Tipo: Artigo em Anais de Congresso |
Biblioteca(s): Embrapa Gado de Corte. |
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20. | | OLIVEIRA, C. C. de; ALVES, F. V.; MARTINS, P. G. M. de A.; KARVATTE JUNIOR, N.; ALVES, G. F.; ALMEIDA, R. G. de; MASTELARO, A. P.; SILVA, E. V. da C. e. Vaginal temperature as indicative of thermoregulatory response in Nellore heifers under different microclimatic conditions. Plos One, v. 14, n. 10, e0223190, October 2019.Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
Biblioteca(s): Embrapa Gado de Corte. |
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Registros recuperados : 20 | |
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