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Registro Completo |
Biblioteca(s): |
Embrapa Agricultura Digital. |
Data corrente: |
02/01/2014 |
Data da última atualização: |
22/01/2020 |
Tipo da produção científica: |
Resumo em Anais de Congresso |
Autoria: |
CINTRA, L. C.; ZERLOTINI, A.; SILVA, F. R. da; LOBO, F. P.; YAMAGISHI, M. E. B.; KUSER-FALCÃO, P. R. K.; GIACHETTO, P. F. |
Afiliação: |
LEANDRO CARRIJO CINTRA, CNPTIA; ADHEMAR ZERLOTINI NETO, CNPTIA; FELIPE RODRIGUES DA SILVA, CNPTIA; FRANCISCO PEREIRA LOBO, CNPTIA; MICHEL EDUARDO BELEZA YAMAGISHI, CNPTIA; PAULA REGINA KUSER FALCÃO, CNPTIA; POLIANA FERNANDA GIACHETTO, CNPTIA. |
Título: |
Embrapa Bioinformatic Multi-user laboratory. |
Ano de publicação: |
2013 |
Fonte/Imprenta: |
In: INTERNATIONAL PLANT & ANIMAL GENOME, 21., 2013, San Diego. [Abstracts...]. [S.l.: s.n.], 2013. |
Páginas: |
Não paginado. |
Idioma: |
Inglês |
Notas: |
Pôster 1017. |
Conteúdo: |
Recently Brazilian Agricultural Research Corporation (Embrapa) implemented the Embrapa Bioinformatic Multi-user Laboratory(LMB) that provides a central point of convergency for related bioinformatics issues in the organization, a high performance computing (HPC) infrastructure to be used by employees and partners on solution of computational intensive problems in bioinformatics, and principally, provides specialized collaborators to realize training, assist the elaboration of projects with bioinformatics components and in specific cases contribute to execute them. The importance of LMB is best understood when one takes into account the way Embrapa research centers are geographically located. The research centers are distributed among the several regions of the Brazil, and bioinformatic becames necessary in many of the projects developed all over the centers, most using considerable computational resources. How is inviable to replicate the HPC infrastructure in every locations, the practical solution is concentrate computational resources at a unique point and provide remote access to them. At human resources perspective, Embrapa has bioinformatics professionals working directly in the units, and is very important ensure they will communicate appropriately. LMB is a convergent point for bioinformaticians in the organization. Finally, The LMB has critical mass to explore complex problems in bioinformatics area. LMB´s infrastructure includes two HPC servers, each one with 512 GB RAM and 48 cores; one storage system and one tape library for backup. The users can execute their jobs by directly accessing the system through a ssh connection or using the Galaxy web system. LMB is also committed to education and training in bioinformatics by providing workshops and courses. MenosRecently Brazilian Agricultural Research Corporation (Embrapa) implemented the Embrapa Bioinformatic Multi-user Laboratory(LMB) that provides a central point of convergency for related bioinformatics issues in the organization, a high performance computing (HPC) infrastructure to be used by employees and partners on solution of computational intensive problems in bioinformatics, and principally, provides specialized collaborators to realize training, assist the elaboration of projects with bioinformatics components and in specific cases contribute to execute them. The importance of LMB is best understood when one takes into account the way Embrapa research centers are geographically located. The research centers are distributed among the several regions of the Brazil, and bioinformatic becames necessary in many of the projects developed all over the centers, most using considerable computational resources. How is inviable to replicate the HPC infrastructure in every locations, the practical solution is concentrate computational resources at a unique point and provide remote access to them. At human resources perspective, Embrapa has bioinformatics professionals working directly in the units, and is very important ensure they will communicate appropriately. LMB is a convergent point for bioinformaticians in the organization. Finally, The LMB has critical mass to explore complex problems in bioinformatics area. LMB´s infrastructure includes two HPC servers, each one with 512 G... Mostrar Tudo |
Palavras-Chave: |
Bioinformática; Laboratório Multiusuário de Bioinformática. |
Thesaurus Nal: |
Bioinformatics. |
Categoria do assunto: |
X Pesquisa, Tecnologia e Engenharia |
URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/item/94602/1/P1017.odt
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Marc: |
LEADER 02548nam a2200241 a 4500 001 1974773 005 2020-01-22 008 2013 bl uuuu u00u1 u #d 100 1 $aCINTRA, L. C. 245 $aEmbrapa Bioinformatic Multi-user laboratory.$h[electronic resource] 260 $aIn: INTERNATIONAL PLANT & ANIMAL GENOME, 21., 2013, San Diego. [Abstracts...]. [S.l.: s.n.]$c2013 300 $aNão paginado. 500 $aPôster 1017. 520 $aRecently Brazilian Agricultural Research Corporation (Embrapa) implemented the Embrapa Bioinformatic Multi-user Laboratory(LMB) that provides a central point of convergency for related bioinformatics issues in the organization, a high performance computing (HPC) infrastructure to be used by employees and partners on solution of computational intensive problems in bioinformatics, and principally, provides specialized collaborators to realize training, assist the elaboration of projects with bioinformatics components and in specific cases contribute to execute them. The importance of LMB is best understood when one takes into account the way Embrapa research centers are geographically located. The research centers are distributed among the several regions of the Brazil, and bioinformatic becames necessary in many of the projects developed all over the centers, most using considerable computational resources. How is inviable to replicate the HPC infrastructure in every locations, the practical solution is concentrate computational resources at a unique point and provide remote access to them. At human resources perspective, Embrapa has bioinformatics professionals working directly in the units, and is very important ensure they will communicate appropriately. LMB is a convergent point for bioinformaticians in the organization. Finally, The LMB has critical mass to explore complex problems in bioinformatics area. LMB´s infrastructure includes two HPC servers, each one with 512 GB RAM and 48 cores; one storage system and one tape library for backup. The users can execute their jobs by directly accessing the system through a ssh connection or using the Galaxy web system. LMB is also committed to education and training in bioinformatics by providing workshops and courses. 650 $aBioinformatics 653 $aBioinformática 653 $aLaboratório Multiusuário de Bioinformática 700 1 $aZERLOTINI, A. 700 1 $aSILVA, F. R. da 700 1 $aLOBO, F. P. 700 1 $aYAMAGISHI, M. E. B. 700 1 $aKUSER-FALCÃO, P. R. K. 700 1 $aGIACHETTO, P. F.
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Registro original: |
Embrapa Agricultura Digital (CNPTIA) |
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Registros recuperados : 72 | |
23. | | AGUIAR, E.; LOBO, F. P.; OLMO, R.; FERREIRA, F.; OLIVEIRA, G.; HULTMAN, K.; JAFARI, N.; CARTHEW, R.; MARQUES, J. Understanding innate immune responses to DNA viruses using the Drosophila melanogaster model. In: INTERNATIONAL CONFERENCE OF THE BRAZILIAN ASSOCIATION FOR BIOINFORMATICS AND COMPUTATIONAL BIOLOGY, 8., 2012, Campinas. Abstract book... Ribeirão Preto: AB3C, 2012. Não paginado. X-MEETING 2012.Tipo: Resumo em Anais de Congresso |
Biblioteca(s): Embrapa Agricultura Digital. |
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24. | | CARNEIRO, N.; NODA, R.; MAGALHÃES, P.; MENEZES, C.; SCHAFFERT, R.; BARROS, B.; GUIMARÃES, C.; LOBO, F. P.; ZERLOTINI, A.; MAGALHÃES, J. Association of differentially expressed genes with drought tolerant sorghum using computer analysis. In: ANNUAL INTERNATIONAL CONFERENCE ON INTELLIGENT SYSTEMS FOR MOLECULAR BIOLOGY, 21.; EUROPEAN CONFERENCE ON COMPUTATIONAL BIOLOGY, 12., 2013, Berlin. Posters... Berlin: ISCB, 2013. Pôster F52.Tipo: Resumo em Anais de Congresso |
Biblioteca(s): Embrapa Agricultura Digital; Embrapa Milho e Sorgo. |
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25. | | ALVES, A. A.; FORMIGHIERI, E. F.; LEAO, A. P.; LOBO, F. P.; RIOS, S. A.; CAPDEVILLE, G. de; SOUZA JUNIOR, M. T. Exploring American Oil Palm (Elaeis oleifera) genetic resources in Brazil through a combination of genetic and genomic approaches. In: PLANT & ANIMAL GENOME CONFERENCE, 22., 2014, San Diego, CA. [Abstracts]. San Diego: [s.n.], 2014. Não paginado. Pôster W551.Tipo: Resumo em Anais de Congresso |
Biblioteca(s): Embrapa Agricultura Digital; Embrapa Agroenergia. |
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26. | | LOBO, F. P.; CINTRA, L. C.; VARELA, E. S.; ALVES, A. L.; SILVA, N. M. A. da; IANELLA, P.; PAIVA, S. R.; CAETANO, A. R. Genome Sequencing and de novo assembly of the South American Tiger Catfish (Pseudoplatystoma punctifer). In: PLANT & ANIMAL GENOME CONFERENCE, 24., 2016, San Diego, CA. [Abstracts...]. San Diego: [s. n.], 2016. Não paginado. PAG 2016. Pôster P0481.Tipo: Resumo em Anais de Congresso |
Biblioteca(s): Embrapa Recursos Genéticos e Biotecnologia. |
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27. | | LOBO, F. P.; CINTRA, L. C.; VARELA, E. S.; ALVES, A. L.; SILVA, N. M. A. da; IANELLA, P.; PAIVA, S. R.; CAETANO, A. R. Genome sequencing and de novo assembly of the South American Tiger Catfish (Pseudoplatystoma punctifer). In: PLANT & ANIMAL GENOME CONFERENCE, 24., 2016, San Diego, CA. [Abstracts...]. San Diego: [s. n.], 2016. Não paginado. PAG 2016. Pôster P0481.Tipo: Resumo em Anais de Congresso |
Biblioteca(s): Embrapa Pesca e Aquicultura. |
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28. | | LOBO, F. P.; CINTRA, L. C.; VARELA, E. S.; ALVES, A. L.; SILVA, N. M. A. da; IANELLA, P.; PAIVA, S. R.; CAETANO, A. R. Genome Sequencing and de novo assembly of the South American Tiger Catfish (Pseudoplatystoma punctifer). In: PLANT & ANIMAL GENOME CONFERENCE, 24., 2016, San Diego, CA. [Abstracts...]. San Diego: [s.n.], 2016. Não paginado. PAG 2016. Pôster P0481.Tipo: Resumo em Anais de Congresso |
Biblioteca(s): Embrapa Agricultura Digital. |
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29. | | ZERLOTINI NETO, A.; LOBO, F. P.; CINTRA, L. C.; YAMAGISHI, M. E. B.; VARELA, E. S.; PAIVA, S. R.; IANELLA, P.; CAETANO, A. R. Genome sequencing and de novo assembly of the South American tiger catfish (Pseudoplatystoma Punctifer) using 10X sequencing data. In: PLANT AND ANIMAL GENOME CONFERENCE, 27., 2019, San Diego. Plant and animal genome abstracts. Livingston, NJ: Scherago, 2019. PO0249Tipo: Resumo em Anais de Congresso |
Biblioteca(s): Embrapa Pesca e Aquicultura. |
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30. | | ZERLOTINI NETO, A.; LOBO, F. P.; CINTRA, L. C.; YAMAGISHI, M. E. B.; VARELA, E. S.; PAIVA, S. R.; IANELLA, P.; CAETANO, A. R. Genome sequencing and de novo assembly of the South American tiger catfish (Pseudoplatystoma Punctifer) using 10X sequencing data. In: PLANT AND ANIMAL GENOME CONFERENCE, 27., 2019, San Diego. Abstracts... [S.l.: s.n.], 2019. Na publicação: Adhemar Zerlotini. PAG 2019. PO0249.Tipo: Resumo em Anais de Congresso |
Biblioteca(s): Embrapa Agricultura Digital; Embrapa Recursos Genéticos e Biotecnologia. |
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31. | | CAETANO, A. R.; IANELLA, P.; VARELA, E. S.; PAIVA, S. R.; LOBO, F. P.; CINTRA, L. C.; ZERLOTINI NETO, A.; YAMAGISHI, M. E. B. Genome sequencing and de novo assembly of tambaqui (Colossoma macropomum). In: AQUACULTURE, 2019, New Orleans. Aquaculture: the big choice! abstracts. [S.l.: s.n.], 2019. p. 182.Tipo: Resumo em Anais de Congresso |
Biblioteca(s): Embrapa Agricultura Digital. |
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32. | | CAETANO, A. R.; IANELLA, P.; VARELA, E. S.; PAIVA, S. R.; LOBO, F. P.; CINTRA, L. C.; ZERLOTINI NETO, A.; YAMAGISHI, M. E. B. Genome sequencing and de novo assembly of tambaqui (Colossoma macropomum). In: AQUACULTURE, 2019, New Orleans. Abstracts. [S.l.]: Word Aquaculture Society, 2019.Tipo: Resumo em Anais de Congresso |
Biblioteca(s): Embrapa Pesca e Aquicultura; Embrapa Recursos Genéticos e Biotecnologia. |
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33. | | RODRIGUES, F. A.; FUGANTI-PAGLIARINI, R.; MARCOLINO-GOMES, J.; NAKAYAMA, T. J.; MOLINARI, H. B. C.; LOBO, F. P.; HARMON, F. G.; NEPAMUCENO, A. L. Daytime soybean transcriptome fluctuations during water deficit stress. BMC Genomics, v. 16, n. 505, p. 2-19, 2015.Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
Biblioteca(s): Embrapa Agroenergia. |
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34. | | RODRIGUES, F. A.; FUGANTI-PAGLIARINI, R.; MARCOLINO-GOMES, J.; NAKAYAMA, T. J.; MOLINARI, H. B. C.; LOBO, F. P.; HARMON, F. G.; NEPOMUCENO, A. L. Daytime soybean transcriptome fluctuations during water deficit stress. BMC Genomics, v. 16, n. 505, 2015. 19 p.Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
Biblioteca(s): Embrapa Soja. |
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35. | | LOBO, F. P.; YAMAGISHI, M. E. B.; CAETANO, A. R.; MCMANUS, C. M.; CARNEIRO, P. L.; FACO, O.; SOUZA, C. J. H.; PAIVA, S. R. Genetic origin of Brazilian local adapted sheep (Ovis aries) breeds by complete mitochodrial genome data analysis. In: INTERNATIONAL PLANT & ANIMAL GENOME, 21., 2013, San Diego. Abstracts... Jersey City: Scherago International, 2013. P0620.Tipo: Resumo em Anais de Congresso |
Biblioteca(s): Embrapa Recursos Genéticos e Biotecnologia. |
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36. | | LOBO, F. P.; YAMAGISHI, M. E. B.; CAETANO, A. R.; MCMANUS, C. M.; CARNEIRO, P. L.; FACO, O.; SOUZA, C. J. H.; PAIVA, S. R. Genetic origin of Brazilian local adapted sheep (Ovis aries) breeds by complete mitochondrial genome data analysis. In: INTERNATIONAL PLANT & ANIMAL GENOME, 21., 2013, San Diego. [Abstracts...]. [S.l.: s.n.], 2013. Não paginado. Pôster P620.Tipo: Resumo em Anais de Congresso |
Biblioteca(s): Embrapa Agricultura Digital; Embrapa Caprinos e Ovinos. |
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37. | | MENDES, T. A. O.; LOBO, F. P.; RODRIGUES, T. S.; RODRIGUES-LUIZ, G. F.; ROCHA, W. D. da; FUJIWARA, R. T.; TEIXEIRA, S. M. R.; BARTHOLOMEU, D. C. Repeat-enriched proteins are related to host cell invasion and immune evasion in parasitic protozoa. Molecular Biology and Evolution, Chicago, v. 30, n. 4, p. 951-963, 2013.Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
Biblioteca(s): Embrapa Agricultura Digital. |
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38. | | CINTRA, L. C.; ZERLOTINI, A.; SILVA, F. R. da; LOBO, F. P.; YAMAGISHI, M. E. B.; KUSER-FALCÃO, P. R. K.; GIACHETTO, P. F. Embrapa Bioinformatic Multi-user laboratory. In: INTERNATIONAL PLANT & ANIMAL GENOME, 21., 2013, San Diego. [Abstracts...]. [S.l.: s.n.], 2013. Não paginado. Pôster 1017.Tipo: Resumo em Anais de Congresso |
Biblioteca(s): Embrapa Agricultura Digital. |
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39. | | KUSER-FALCÃO, P. R.; YAMAGISHI, M. E. B.; GIACHETTO, P. F.; SILVA, F. R.; LOBO, F. P.; CINTRA, L. C.; ZERLOTINI, A.; HIGA, R.; VIEIRA, F. Embrapa Bioinformatics Multi-Users Laboratory - LMB. In: INTERNATIONAL CONFERENCE OF THE BRAZILIAN ASSOCIATION FOR BIOINFORMATICS AND COMPUTATIONAL BIOLOGY, 8., 2012, Campinas. Abstract book... Ribeirão Preto: AB3C, 2012. Não paginado. X-MEETING 2012.Tipo: Resumo em Anais de Congresso |
Biblioteca(s): Embrapa Agricultura Digital. |
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40. | | LOBO, F. P.; RODRIGUES, M. R.; RODRIGUES, G. O. L.; HILÁRIO, H. O.; SOUZA, R. A.; TAUCH, A.; MIYOSHI, A.; FRANCO, G. C.; AZEVEDO, V.; FRANCO, G. R. KOMODO: a web tool for detecting and visualizing biased distribution of groups of homologous genes in monophyletic taxa. Nucleic Acids Research, Oxford, v. 40, p. W491-W497, 2012.Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
Biblioteca(s): Embrapa Agricultura Digital. |
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Registros recuperados : 72 | |
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Nenhum registro encontrado para a expressão de busca informada. |
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