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Registro Completo |
Biblioteca(s): |
Embrapa Agroenergia; Embrapa Meio-Norte. |
Data corrente: |
26/01/2022 |
Data da última atualização: |
21/02/2022 |
Tipo da produção científica: |
Artigo em Periódico Indexado |
Autoria: |
SILVA, T. L. C. da; SILVA, V. N. B.; BRAGA, I. de O.; RODRIGUES NETO, J. C.; LEAO, A. P.; RIBEIRO, J. A. de A.; VALADARES, L. F.; ABDELNUR, P. V.; SOUSA, C. A. F. de; SOUZA JUNIOR, M. T. |
Afiliação: |
THALLITON LUIZ CARVALHO DA SILVA, Programa de Pós-Graduação em Biotecnologia Vegetal, Universidade Federal de Lavras, MG, Brasil.; VIVIANNY NAYSE BELO SILVA, Programa de Pós-Graduação em Biotecnologia Vegetal, Universidade Federal de Lavras, MG, Brasil.; ÍTALO DE OLIVEIRA BRAGA, Programa de Pós-Graduação em Biotecnologia Vegetal, Universidade Federal de Lavras, MG, Brasil.; JORGE CANDIDO RODRIGUES NETO, Instituto de Química, Universidade Federal de Goiás, Goiânia, GO, Brasil.; ANDRE PEREIRA LEAO, CNPAE; JOSE ANTONIO DE AQUINO RIBEIRO, CNPAE; LEONARDO FONSECA VALADARES, CNPAE; PATRICIA VERARDI ABDELNUR, CNPAE; CARLOS ANTONIO FERREIRA DE SOUSA, CPAMN; MANOEL TEIXEIRA SOUZA JUNIOR, CNPAE. |
Título: |
Integration of metabolomics and transcriptomics data to further characterize Gliricidia sepium (Jacq.) Kunth under high salinity stress. |
Ano de publicação: |
2021 |
Fonte/Imprenta: |
Plant Genome, e20182, 2021. |
Idioma: |
Inglês |
Conteúdo: |
Soil salinity is one abiotic stress that threatens agriculture in more than 100 countries. Gliricidia [Gliricidia sepium (Jacq.) Kunth] is a multipurpose tree known for its ability to adapt to a wide range of soils; however, its tolerance limits and responses to salt stress are not yet well understood. In this study, after characterizing the morphophysiological responses of young gliricidia plants to salinity stress, leaf metabolic and transcription profiles were generated and submitted to single and integrated analyses. RNA from leaf samples were subjected to RNA sequencing using an Illumina HiSeq platform and the paired-end strategy. Polar and lipidic fractions from leaf samples were extracted and analyzed on an ultra-high-performance liquid chromatography (UHPLC) coupled with electrospray ionization quadrupole time-offlight high-resolution mass spectrometry (MS) system. Acquired data were analyzed using the OmicsBox, XCMS Online, MetaboAnalyst, and Omics Fusion platforms. The substrate salinization protocol used allowed the identification of two distinct responses to salt stress: tolerance and adaptation. Single analysis on transcriptome and metabolome data sets led to a group of 5,672 transcripts and 107 metabolites differentially expressed in gliricidia leaves under salt stress. The phenylpropanoid biosynthesis was the most affected pathway, with 15 metabolites and three genes differentially expressed. Results showed that the differentially expressed metabolites and genes from this pathway affect mainly short-term salt stress (STS). The single analysis of the transcriptome identified 12 genes coding for proteins that might play a role in gliricidia response at both STS and long-termsalt stress (LTS). Further studies are needed to reveal the mechanisms behind the adaptation response. MenosSoil salinity is one abiotic stress that threatens agriculture in more than 100 countries. Gliricidia [Gliricidia sepium (Jacq.) Kunth] is a multipurpose tree known for its ability to adapt to a wide range of soils; however, its tolerance limits and responses to salt stress are not yet well understood. In this study, after characterizing the morphophysiological responses of young gliricidia plants to salinity stress, leaf metabolic and transcription profiles were generated and submitted to single and integrated analyses. RNA from leaf samples were subjected to RNA sequencing using an Illumina HiSeq platform and the paired-end strategy. Polar and lipidic fractions from leaf samples were extracted and analyzed on an ultra-high-performance liquid chromatography (UHPLC) coupled with electrospray ionization quadrupole time-offlight high-resolution mass spectrometry (MS) system. Acquired data were analyzed using the OmicsBox, XCMS Online, MetaboAnalyst, and Omics Fusion platforms. The substrate salinization protocol used allowed the identification of two distinct responses to salt stress: tolerance and adaptation. Single analysis on transcriptome and metabolome data sets led to a group of 5,672 transcripts and 107 metabolites differentially expressed in gliricidia leaves under salt stress. The phenylpropanoid biosynthesis was the most affected pathway, with 15 metabolites and three genes differentially expressed. Results showed that the differentially expressed metabolites and gen... Mostrar Tudo |
Palavras-Chave: |
Adaptation; Salinization protocol. |
Categoria do assunto: |
-- |
URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/item/230514/1/The-Plant-Genome-2022-Integration.pdf
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Marc: |
LEADER 02601naa a2200253 a 4500 001 2139329 005 2022-02-21 008 2021 bl uuuu u00u1 u #d 100 1 $aSILVA, T. L. C. da 245 $aIntegration of metabolomics and transcriptomics data to further characterize Gliricidia sepium (Jacq.) Kunth under high salinity stress.$h[electronic resource] 260 $c2021 520 $aSoil salinity is one abiotic stress that threatens agriculture in more than 100 countries. Gliricidia [Gliricidia sepium (Jacq.) Kunth] is a multipurpose tree known for its ability to adapt to a wide range of soils; however, its tolerance limits and responses to salt stress are not yet well understood. In this study, after characterizing the morphophysiological responses of young gliricidia plants to salinity stress, leaf metabolic and transcription profiles were generated and submitted to single and integrated analyses. RNA from leaf samples were subjected to RNA sequencing using an Illumina HiSeq platform and the paired-end strategy. Polar and lipidic fractions from leaf samples were extracted and analyzed on an ultra-high-performance liquid chromatography (UHPLC) coupled with electrospray ionization quadrupole time-offlight high-resolution mass spectrometry (MS) system. Acquired data were analyzed using the OmicsBox, XCMS Online, MetaboAnalyst, and Omics Fusion platforms. The substrate salinization protocol used allowed the identification of two distinct responses to salt stress: tolerance and adaptation. Single analysis on transcriptome and metabolome data sets led to a group of 5,672 transcripts and 107 metabolites differentially expressed in gliricidia leaves under salt stress. The phenylpropanoid biosynthesis was the most affected pathway, with 15 metabolites and three genes differentially expressed. Results showed that the differentially expressed metabolites and genes from this pathway affect mainly short-term salt stress (STS). The single analysis of the transcriptome identified 12 genes coding for proteins that might play a role in gliricidia response at both STS and long-termsalt stress (LTS). Further studies are needed to reveal the mechanisms behind the adaptation response. 653 $aAdaptation 653 $aSalinization protocol 700 1 $aSILVA, V. N. B. 700 1 $aBRAGA, I. de O. 700 1 $aRODRIGUES NETO, J. C. 700 1 $aLEAO, A. P. 700 1 $aRIBEIRO, J. A. de A. 700 1 $aVALADARES, L. F. 700 1 $aABDELNUR, P. V. 700 1 $aSOUSA, C. A. F. de 700 1 $aSOUZA JUNIOR, M. T. 773 $tPlant Genome, e20182, 2021.
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Registro original: |
Embrapa Agroenergia (CNPAE) |
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Registros recuperados : 50 | |
21. | | FERREIRA FILHO, J. A.; LEAO, A. P.; CUNHA, R. N. V. da; FORMIGHIERI, E. F.; ALVES, A. A.; SOUZA JUNIOR, M. T. Estabelecimento de coleção nuclear da Palma de Óleo Americana [Elaeis oleifera (Kunth) Cortés]. In: CONGRESSO BRASILEIRO DE RECURSOS GENÉTICOS, 5., 2018, Fortaleza, Ceará. Resumos ... Brasília, DF: SBRG, 2018. Não paginado.Tipo: Resumo em Anais de Congresso |
Biblioteca(s): Embrapa Amazônia Ocidental. |
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22. | | FERREIRA FILHO, J. A.; LEAO, A. P.; CUNHA, R. N. V. da; FORMIGHIERI, E. F.; ALVES, A. A.; SOUZA JUNIOR, M. T. Estabelecimento de coleção nuclear da Palma de Óleo Americana [Elaeis oleifera (Kunth) Cortés]. In: CONGRESSO BRASILEIRO DE RECURSOS GENÉTICOS, 5., 2018, Fortaleza, Ceará. Resumos ... Brasília, DF: SBRG, 2018. Não paginado.Tipo: Resumo em Anais de Congresso |
Biblioteca(s): Embrapa Agroenergia. |
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23. | | LEAO, A. P.; VARGAS, L. H. G.; FARIAS, M. P.; FORMIGHIERI, E. F.; ALVES, A. A.; CAPDEVILLE, G. de; SOUZA JUNIOR, M. T. Estabelecimento de curva de melting para elaeis guineenses jacq. e elaeis oleífera (kunth) cortés. In: WORKSHOP AGROENERGIA, 6., 2012, Ribeirão Preto, SP. Anais... Ribeirão Preto: APTA; Campinas: IAC, 2012. Não paginadoTipo: Artigo em Anais de Congresso |
Biblioteca(s): Embrapa Agroenergia. |
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24. | | VARGAS, L. H. G.; LEAO, A. P.; FARIAS, M. P.; ALVES, A. A.; FORMIGHIERI, E. F.; CAPDEVILLE, G. de; SOUZA JUNIOR, M. T. Estabelecimento de um protocolo eficiente para extração de rna a partir de folhas jovens de elaeis guineensis jacq. In: WORKSHOP AGROENERGIA, 6., 2012, Ribeirão Preto, SP. Anais... Ribeirão Preto: APTA; Campinas: IAC, 2012. Não paginadoTipo: Artigo em Anais de Congresso |
Biblioteca(s): Embrapa Agroenergia. |
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25. | | ALVES, A. A.; FORMIGHIERI, E. F.; LEAO, A. P.; LOBO, F. P.; RIOS, S. A.; CAPDEVILLE, G. de; SOUZA JUNIOR, M. T. Exploring American Oil Palm (Elaeis oleifera) genetic resources in Brazil through a combination of genetic and genomic approaches. In: PLANT & ANIMAL GENOME CONFERENCE, 22., 2014, San Diego, CA. [Abstracts]. San Diego: [s.n.], 2014. Não paginado. Pôster W551.Tipo: Resumo em Anais de Congresso |
Biblioteca(s): Embrapa Agricultura Digital; Embrapa Agroenergia. |
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26. | | PEREIRA, V. M.; FILHO, J. A. F.; LEAO, A. P.; FORMIGHIERI, E. F.; SOUZA JUNIOR, M. T.; RIOS, S. de A.; ALVES, A. A. Molecular characterization and genetic structure of american oil palm (Elaeis oleifera) based on genome-wide SNP markers. In: ENCONTRO DE PESQUISA E INOVAÇÃO DA EMBRAPA AGROENERGIA, 2., 2015, Brasília, DF. Anais... Brasília, DF: Embrapa Agroenergia, 2015. p. 122-124.Tipo: Resumo em Anais de Congresso |
Biblioteca(s): Embrapa Amazônia Ocidental. |
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27. | | PEREIRA, V. M.; FILHO, J. A. F.; LEAO, A. P.; FORMIGHIERI, E. F.; SOUZA JUNIOR, M. T.; RIOS, S. de A.; ALVES, A. A. Molecular characterization and genetic structure of american oil palm (Elaeis oleifera) based on genome-wide SNP markers. In: ENCONTRO DE PESQUISA E INOVAÇÃO DA EMBRAPA AGROENERGIA, 2., 2015, Brasília, DF. Anais ... Brasília, DF: Embrapa Agroenergia, 2015. p. 122-124Tipo: Resumo em Anais de Congresso |
Biblioteca(s): Embrapa Agroenergia. |
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30. | | SALGADO, F. F.; LEAO, A. P.; GRYNBERG, P.; COSTA, M. M. do C.; TOGAWA, R. C.; SOUSA, C. A. F. de; SOUZA JUNIOR, M. T. Prediction and annotation of miRNAs and the preponderant role of transcription factors in the response of Elaeis guineensis Jacq to abiotic stresses of drought and salinity. In: BRAZILIAN SYMPOSIUM ON BIOINFOMATICS (BSB 2023), 16., 2023, Curitiba, PR. [Proceedings...]. Porto Alegre, RS: Sociedade Brasileira de Computação, 2023.Tipo: Resumo em Anais de Congresso |
Biblioteca(s): Embrapa Recursos Genéticos e Biotecnologia. |
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31. | | PEREIRA, V. M.; FERREIRA FILHO, J. A.; LEAO, A. P.; VARGAS, L. H. G.; FARIAS, M. P. de; RIOS, S. de A.; CUNHA, R. N. V. da; FORMIGHIERI, E. F.; ALVES, A. A.; SOUZA JUNIOR, M. T. American oil palm from Brazil: Genetic diversity, population structure, and core collection. Crop Science, v. 60, p. 3212-3227, Nov./Dec. 2020. il.Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
Biblioteca(s): Embrapa Agroenergia; Embrapa Amazônia Ocidental; Embrapa Milho e Sorgo. |
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32. | | SALGADO, F. F.; SILVA, T. L. C. da; VIEIRA, L. R.; SILVA, V. N. B.; LEAO, A. P.; COSTA, M. M. do C.; TOGAWA, R. C.; SOUSA, C. A. F. de; GRYNBERG, P.; SOUZA JUNIOR, M. T. The early response of oil palm (Elaeis guineensis Jacq.) plants to water deprivation: Expression analysis of miRNAs and their putative target genes, and similarities with the response to salinity stress. Frontiers in Plant Science, n. 13, 970113, 2022.Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
Biblioteca(s): Embrapa Agroenergia; Embrapa Meio-Norte; Embrapa Recursos Genéticos e Biotecnologia. |
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33. | | FARIAS, M. P. de; CAPDEVILLE, G. de; FALCAO, R.; MORAES, P. B. de; LEAO, A. P.; CAMILLO, J.; CUNHA, R. N. V. da; ALVES, A. A.; SOUZA JUNIOR, M. T. Microscopic characterization of American oil palm (Elaeis oleifera (Kunth) Cortés) floral development. Flora, v. 243, p. 88-100, 2018.Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 2 |
Biblioteca(s): Embrapa Agroenergia; Embrapa Amazônia Ocidental. |
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34. | | PEREIRA, V. M.; LEAO, A. P.; VARGAS, L. H.; FARIAS, M. P. de; FORMIGHERI, E. F.; CAPDEVILLE, G. de; SOUZA JUNIOR, M. T.; RIOS, S. de A.; ALVES, A. A. Extensão e organização da diversidade genética da coleção brasileira de germoplasma de Elaeis oleifera. In: CONGRESSO INTERNACIONAL DE BIOENERGIA, 8., 2013, São Paulo, SP. Anais... São Paulo: CIPA, 2013.Tipo: Artigo em Anais de Congresso |
Biblioteca(s): Embrapa Amazônia Ocidental. |
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35. | | PEREIRA, V. M.; LEAO, A. P.; VARGAS, L. H.; FARIAS, M. P. de; FORMIGHIERI, E. F.; CAPDEVILLE, G. de; SOUZA JUNIOR, M. T.; RIOS, S. de A.; ALVES, A. A. Extensão e organização da diversidade genética da coleção brasileira de germoplasma de Elaeis oleifera. In: CONGRESSO INTERNACIONAL DE BIOENERGIA, 8., 2013, São Paulo, SP. Anais... São Paulo: CIPA, 2013.Tipo: Artigo em Anais de Congresso |
Biblioteca(s): Embrapa Agroenergia. |
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36. | | SALGADO, F. F.; VIEIRA, L. R.; SILVA, V. N. B.; LEAO, A. P.; GRYNBERG, P.; COSTA, M. M. do C.; TOGAWA, R. C.; SOUSA, C. A. F. de; SOUZA JUNIOR, M. T. Expression analysis of miRNAs and their putative target genes confirm a preponderant role of transcription factors in the early response of oil palm plants to salinity stress. BMC Plant Biology, v. 21, n. 518, 2021.Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
Biblioteca(s): Embrapa Agroenergia; Embrapa Meio-Norte. |
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37. | | SALGADO, F. F.; VIEIRA, L. R.; SILVA, V. N. B.; LEAO, A. P.; GRYNBERG, P.; COSTA, M. M. do C.; TOGAWA, R. C.; SOUSA, C. A. F. de; SOUZA JUNIOR, M. T. Expression analysis of miRNAs and their putative target genes confrm a preponderant role of transcription factors in the early response of oil palm plants to salinity stress. BMC Plant Biology, v. 21, 518, 2021.Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
Biblioteca(s): Embrapa Recursos Genéticos e Biotecnologia. |
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38. | | BITTENCOURT, C. B.; SILVA, T. L. C. da; RODRIGUES NETO, J. C.; VIEIRA, L. R.; LEAO, A. P.; RIBEIRO, J. A. de A.; ABDELNUR, P. V.; SOUSA, C. A. F. de; SOUZA JUNIOR, M. T. Insights from a Multi-Omics Integration (MOI) Study in Oil Palm (Elaeis gineensis Jacq.) Response to Abiotic Stresses: Part One?Salinity. Plants, 11, n. 1755, 2022.Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 4 |
Biblioteca(s): Embrapa Agroenergia; Embrapa Meio-Norte. |
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39. | | LEAO, A. P.; BITTENCOURT, C. B.; SILVA, T. L. C. da; RODRIGUES NETO, J. C.; BRAGA, I. de O.; VIEIRA, L. R.; RIBEIRO, J. A. de A.; SOUSA, C. A. F. de; ABDELNUR, P. V.; SOUZA JUNIOR, M. T. Insights from a Multi-Omics Integration (MOI) Study in Oil Palm (Elaeis gineensis Jacq.) Response to Abiotic Stresses: Part Two - Drought. Plants, 11, n. 2786, 2022.Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 4 |
Biblioteca(s): Embrapa Agroenergia. |
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40. | | LEAO, A. P.; BITTENCOURT, C. B.; SILVA, T. L. C. da; RODRIGUES NETO, J. C.; BRAGA, Í. de O.; VIEIRA, L. R.; RIBEIRO, J. A. de A.; ABDELNUR, P. V.; SOUSA, C. A. F. de; SOUZA JUNIOR, M. T. Insights from a Multi-Omics Integration (MOI) study in Oil Palm (Elaeis guineensis Jacq.) response to abiotic stresses: Part Two-Drought. Plants, v. 11, n. 20, 2786, Oct. 2022.Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 4 |
Biblioteca(s): Embrapa Meio-Norte. |
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