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Registro Completo |
Biblioteca(s): |
Embrapa Soja. |
Data corrente: |
05/01/2012 |
Data da última atualização: |
03/04/2013 |
Tipo da produção científica: |
Artigo em Periódico Indexado |
Autoria: |
KULCHESKI, F. R.; OLIVEIRA, L. F. V.; MOLINA, L. G.; ALMERAO, M. P.; RODRIGUES, F. A.; MARCOLINO, J.; BARBOSA, J. F.; STOLF-MOREIRA, R.; NEPOMUCENO, A. L.; MARCELINO-GUIMARÃES, F. C.; ABDELNOOR, R. V.; NASCIMENTO, L. C.; CARAZZOLLE, M. F.; PEREIRA, G. A. G.; MARGIS, R. |
Afiliação: |
FRANCELI R. KULCHESKI, UFRGS; LUIZ F. V. DE OLIVEIRA, UFRGS; LORRAYNE, G. MOLINA, UFRGS; MAURÍCIO P. ALMERÃO, UFRGS; FABIANA A. RODRIGUES, CNPSo; JULIANA MARCOLINO, CNPSo; JOICE F. BARBOSA, CNPSo; RENATA STOLF MOREIRA, CNPSo; ALEXANDRE LIMA NEPOMUCENO, SRI; FRANCISMAR CORREA MARCELINO GUIMARÃES, CNPSO; RICARDO VILELA ABDELNOOR, CNPSO; LEANDRO C. NASCIMENTO, UNICAMP; MARCELO F. CARAZZOLLE, UNICAMP; GONÇALO A. G. PEREIRA, UNICAMP; ROGÉRIO MARGIS, UFRGS. |
Título: |
Identification of novel soybean microRNAs involved in abiotic and biotic stresses. |
Ano de publicação: |
2011 |
Fonte/Imprenta: |
BMC Genomics, v. 12, n. 307, jun. 2011. |
Páginas: |
17 p. |
DOI: |
10.1186/1471-2164-12-307 |
Idioma: |
Português |
Conteúdo: |
Background: Small RNAs (19-24 nt) are key regulators of gene expression that guide both transcriptional and posttranscriptional silencing mechanisms in eukaryotes. Current studies have demonstrated that microRNAs (miRNAs) act in several plant pathways associated with tissue proliferation, differentiation, and development and in response to abiotic and biotic stresses. In order to identify new miRNAs in soybean and to verify those that are possibly water deficit and rust-stress regulated, eight libraries of small RNAs were constructed and submitted to Solexa sequencing. Results: The libraries were developed from drought-sensitive and tolerant seedlings and rust-susceptible and resistant soybeans with or without stressors. Sequencing the library and subsequent analyses detected 256 miRNAs. From this total, we identified 24 families of novel miRNAs that had not been reported before, six families of conserved miRNAs that exist in other plants species, and 22 families previously reported in soybean. We also observed the presence of several isomiRNAs during our analyses. To validate novel miRNAs, we performed RT-qPCR across the eight different libraries. Among the 11 miRNAs analyzed, all showed different expression profiles during biotic and abiotic stresses to soybean. The majority of miRNAs were up-regulated during water deficit stress in the sensitive plants. However, for the tolerant genotype, most of the miRNAs were down regulated. The pattern of miRNAs expression was also different for the distinct genotypes submitted to the pathogen stress. Most miRNAs were down regulated during the fungus infection in the susceptible genotype; however, in the resistant genotype, most miRNAs did not vary during rust attack. A prediction of the putative targets was carried out for conserved and novel miRNAs families. Conclusions: Validation of our results with quantitative RT-qPCR revealed that Solexa sequencing is a powerful tool for miRNA discovery. The identification of differentially expressed plant miRNAs provides molecular evidence for the possible involvement of miRNAs in the process of water deficit- and rust-stress responses. MenosBackground: Small RNAs (19-24 nt) are key regulators of gene expression that guide both transcriptional and posttranscriptional silencing mechanisms in eukaryotes. Current studies have demonstrated that microRNAs (miRNAs) act in several plant pathways associated with tissue proliferation, differentiation, and development and in response to abiotic and biotic stresses. In order to identify new miRNAs in soybean and to verify those that are possibly water deficit and rust-stress regulated, eight libraries of small RNAs were constructed and submitted to Solexa sequencing. Results: The libraries were developed from drought-sensitive and tolerant seedlings and rust-susceptible and resistant soybeans with or without stressors. Sequencing the library and subsequent analyses detected 256 miRNAs. From this total, we identified 24 families of novel miRNAs that had not been reported before, six families of conserved miRNAs that exist in other plants species, and 22 families previously reported in soybean. We also observed the presence of several isomiRNAs during our analyses. To validate novel miRNAs, we performed RT-qPCR across the eight different libraries. Among the 11 miRNAs analyzed, all showed different expression profiles during biotic and abiotic stresses to soybean. The majority of miRNAs were up-regulated during water deficit stress in the sensitive plants. However, for the tolerant genotype, most of the miRNAs were down regulated. The pattern of miRNAs expression was also di... Mostrar Tudo |
Thesagro: |
Deficiência hídrica; Gene marcador; Soja. |
Thesaurus Nal: |
Gene expression; Soil water deficit; Soybeans. |
Categoria do assunto: |
P Recursos Naturais, Ciências Ambientais e da Terra |
URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/item/51756/1/BMC-2011.pdf
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Marc: |
LEADER 03216naa a2200385 a 4500 001 1911802 005 2013-04-03 008 2011 bl uuuu u00u1 u #d 024 7 $a10.1186/1471-2164-12-307$2DOI 100 1 $aKULCHESKI, F. R. 245 $aIdentification of novel soybean microRNAs involved in abiotic and biotic stresses. 260 $c2011 300 $a17 p. 520 $aBackground: Small RNAs (19-24 nt) are key regulators of gene expression that guide both transcriptional and posttranscriptional silencing mechanisms in eukaryotes. Current studies have demonstrated that microRNAs (miRNAs) act in several plant pathways associated with tissue proliferation, differentiation, and development and in response to abiotic and biotic stresses. In order to identify new miRNAs in soybean and to verify those that are possibly water deficit and rust-stress regulated, eight libraries of small RNAs were constructed and submitted to Solexa sequencing. Results: The libraries were developed from drought-sensitive and tolerant seedlings and rust-susceptible and resistant soybeans with or without stressors. Sequencing the library and subsequent analyses detected 256 miRNAs. From this total, we identified 24 families of novel miRNAs that had not been reported before, six families of conserved miRNAs that exist in other plants species, and 22 families previously reported in soybean. We also observed the presence of several isomiRNAs during our analyses. To validate novel miRNAs, we performed RT-qPCR across the eight different libraries. Among the 11 miRNAs analyzed, all showed different expression profiles during biotic and abiotic stresses to soybean. The majority of miRNAs were up-regulated during water deficit stress in the sensitive plants. However, for the tolerant genotype, most of the miRNAs were down regulated. The pattern of miRNAs expression was also different for the distinct genotypes submitted to the pathogen stress. Most miRNAs were down regulated during the fungus infection in the susceptible genotype; however, in the resistant genotype, most miRNAs did not vary during rust attack. A prediction of the putative targets was carried out for conserved and novel miRNAs families. Conclusions: Validation of our results with quantitative RT-qPCR revealed that Solexa sequencing is a powerful tool for miRNA discovery. The identification of differentially expressed plant miRNAs provides molecular evidence for the possible involvement of miRNAs in the process of water deficit- and rust-stress responses. 650 $aGene expression 650 $aSoil water deficit 650 $aSoybeans 650 $aDeficiência hídrica 650 $aGene marcador 650 $aSoja 700 1 $aOLIVEIRA, L. F. V. 700 1 $aMOLINA, L. G. 700 1 $aALMERAO, M. P. 700 1 $aRODRIGUES, F. A. 700 1 $aMARCOLINO, J. 700 1 $aBARBOSA, J. F. 700 1 $aSTOLF-MOREIRA, R. 700 1 $aNEPOMUCENO, A. L. 700 1 $aMARCELINO-GUIMARÃES, F. C. 700 1 $aABDELNOOR, R. V. 700 1 $aNASCIMENTO, L. C. 700 1 $aCARAZZOLLE, M. F. 700 1 $aPEREIRA, G. A. G. 700 1 $aMARGIS, R. 773 $tBMC Genomics$gv. 12, n. 307, jun. 2011.
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Registro original: |
Embrapa Soja (CNPSO) |
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Biblioteca(s): |
Embrapa Algodão. |
Data corrente: |
27/11/2012 |
Data da última atualização: |
29/11/2012 |
Tipo da produção científica: |
Nota Técnica/Nota Científica |
Autoria: |
FERREIRA, M. M. M. |
Afiliação: |
MAGNA MARIA MACEDO FERREIRA, CNPA. |
Título: |
Sintomas de deficiência de macro e micronutrientes de plantas de milho híbrido BRS 1010 |
Ano de publicação: |
2012 |
Fonte/Imprenta: |
Revista Agro@mbiente On-line, v. 6, n. 1, p. 74-83, jan./abr. 2012. |
Páginas: |
p.74-83 |
ISSN: |
1982-8470 |
Idioma: |
Português |
Palavras-Chave: |
DIAGNOSE POR SUBTRAÇÃO; DIAGNOSE VISUAL; MACRONUTRIENTES; ZEA MAYS L. |
Thesagro: |
Deficiência Nutricional. |
Categoria do assunto: |
-- |
URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/item/71091/1/569-2540-1-PB.pdf
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Marc: |
LEADER 00614naa a2200193 a 4500 001 1940687 005 2012-11-29 008 2012 bl uuuu u00u1 u #d 022 $a1982-8470 100 1 $aFERREIRA, M. M. M. 245 $aSintomas de deficiência de macro e micronutrientes de plantas de milho híbrido BRS 1010$h[electronic resource] 260 $c2012 300 $ap.74-83 650 $aDeficiência Nutricional 653 $aDIAGNOSE POR SUBTRAÇÃO 653 $aDIAGNOSE VISUAL 653 $aMACRONUTRIENTES 653 $aZEA MAYS L 773 $tRevista Agro@mbiente On-line$gv. 6, n. 1, p. 74-83, jan./abr. 2012.
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