| |
|
|
|
Registro Completo |
|
Biblioteca(s): |
Embrapa Milho e Sorgo. |
|
Data corrente: |
15/10/2020 |
|
Data da última atualização: |
06/07/2021 |
|
Tipo da produção científica: |
Artigo em Periódico Indexado |
|
Autoria: |
BERNARDINO, K. C.; MENEZES, C. B. de; SOUSA, S. M. de; GUIMARÃES, C. T.; CARNEIRO, P. C. S.; SCHAFFERT, R. E.; KOCHIAN, L. V.; HUFNAGEL, B.; PASTINA, M. M.; MAGALHAES, J. V. de. |
|
Afiliação: |
Karine C. Bernardino, Universidade Federal de Viçosa; CICERO BESERRA DE MENEZES, CNPMS; SYLVIA MORAIS DE SOUSA TINOCO, CNPMS; CLAUDIA TEIXEIRA GUIMARAES, CNPMS; Pedro C. S. Carneiro, Universidade Federal de Viçosa; ROBERT EUGENE SCHAFFERT, CNPMS; Leon V. Kochian, University of Saskatchewan; Barbara Hufnagel, University of Montpellier; MARIA MARTA PASTINA, CNPMS; JURANDIR VIEIRA DE MAGALHAES, CNPMS. |
|
Título: |
Association mapping and genomic selection for sorghum adaptation to tropical soils of Brazil in a sorghum multiparental random mating population. |
|
Ano de publicação: |
2021 |
|
Fonte/Imprenta: |
Theoretical and Applied Genetics, v. 134, p. 295-312, 2021. |
|
DOI: |
https://doi.org/10.1007/s00122-020-03697-8 |
|
Idioma: |
Inglês |
|
Conteúdo: |
Tropical soils where low phosphorus (P) and aluminum (Al) toxicity limit sorghum [Sorghum bicolor (L.) Moench] production are widespread in the developing world. We report on BRP13R, a multiparental random mating population (MPRMP), which is commonly used in sorghum recurrent selection targeting tropical soil adaptation. Recombination dissipated much of BRP13R?s likely original population structure and average linkage disequilibrium (LD) persisted up to 2.5 Mb, establishing BRP13R as a middle ground between biparental populations and sorghum association panels. Genome-wide association mapping (GWAS) identifed conserved QTL from previous studies, such as for root morphology and grain yield under low-P, and indicated the importance of dominance in the genetic architecture of grain yield. By overlapping consensus QTL regions, we mapped two candidate P efciency genes to a ~5 Mb region on chromosomes 6 (ALMT) and 9 (PHO2). Remarkably, we fnd that only 200 progeny genotyped with~45,000 markers in BRP13R can lead to GWAS-based positional cloning of naturally rare, subpopulation-specifc alleles, such as for SbMATE-conditioned Al tolerance. Genomic selection was found to be useful in such MP-RMP, particularly if markers in LD with major genes are ftted as fxed efects into GBLUP models accommodating dominance. Shifts in allele frequencies in progeny contrasting for grain yield indicated that intermediate to minor-efect genes on P efciency, such as SbPSTOL1 genes, can be employed in pre-breeding via allele mining in the base population. Therefore, MP-RMPs such as BRP13R emerge as multipurpose resources for efcient gene discovery and deployment for breeding sorghum cultivars adapted to tropical soils. MenosTropical soils where low phosphorus (P) and aluminum (Al) toxicity limit sorghum [Sorghum bicolor (L.) Moench] production are widespread in the developing world. We report on BRP13R, a multiparental random mating population (MPRMP), which is commonly used in sorghum recurrent selection targeting tropical soil adaptation. Recombination dissipated much of BRP13R?s likely original population structure and average linkage disequilibrium (LD) persisted up to 2.5 Mb, establishing BRP13R as a middle ground between biparental populations and sorghum association panels. Genome-wide association mapping (GWAS) identifed conserved QTL from previous studies, such as for root morphology and grain yield under low-P, and indicated the importance of dominance in the genetic architecture of grain yield. By overlapping consensus QTL regions, we mapped two candidate P efciency genes to a ~5 Mb region on chromosomes 6 (ALMT) and 9 (PHO2). Remarkably, we fnd that only 200 progeny genotyped with~45,000 markers in BRP13R can lead to GWAS-based positional cloning of naturally rare, subpopulation-specifc alleles, such as for SbMATE-conditioned Al tolerance. Genomic selection was found to be useful in such MP-RMP, particularly if markers in LD with major genes are ftted as fxed efects into GBLUP models accommodating dominance. Shifts in allele frequencies in progeny contrasting for grain yield indicated that intermediate to minor-efect genes on P efciency, such as SbPSTOL1 genes, can be employed in pr... Mostrar Tudo |
|
Palavras-Chave: |
Seleção genômica. |
|
Thesagro: |
Gene; Genética Vegetal; Melhoramento Genético Vegetal; Sorgo. |
|
Categoria do assunto: |
-- |
|
URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/item/223127/1/Association-mapping.pdf
|
|
Marc: |
LEADER 02692naa a2200301 a 4500
001 2125512
005 2021-07-06
008 2021 bl uuuu u00u1 u #d
024 7 $ahttps://doi.org/10.1007/s00122-020-03697-8$2DOI
100 1 $aBERNARDINO, K. C.
245 $aAssociation mapping and genomic selection for sorghum adaptation to tropical soils of Brazil in a sorghum multiparental random mating population.$h[electronic resource]
260 $c2021
520 $aTropical soils where low phosphorus (P) and aluminum (Al) toxicity limit sorghum [Sorghum bicolor (L.) Moench] production are widespread in the developing world. We report on BRP13R, a multiparental random mating population (MPRMP), which is commonly used in sorghum recurrent selection targeting tropical soil adaptation. Recombination dissipated much of BRP13R?s likely original population structure and average linkage disequilibrium (LD) persisted up to 2.5 Mb, establishing BRP13R as a middle ground between biparental populations and sorghum association panels. Genome-wide association mapping (GWAS) identifed conserved QTL from previous studies, such as for root morphology and grain yield under low-P, and indicated the importance of dominance in the genetic architecture of grain yield. By overlapping consensus QTL regions, we mapped two candidate P efciency genes to a ~5 Mb region on chromosomes 6 (ALMT) and 9 (PHO2). Remarkably, we fnd that only 200 progeny genotyped with~45,000 markers in BRP13R can lead to GWAS-based positional cloning of naturally rare, subpopulation-specifc alleles, such as for SbMATE-conditioned Al tolerance. Genomic selection was found to be useful in such MP-RMP, particularly if markers in LD with major genes are ftted as fxed efects into GBLUP models accommodating dominance. Shifts in allele frequencies in progeny contrasting for grain yield indicated that intermediate to minor-efect genes on P efciency, such as SbPSTOL1 genes, can be employed in pre-breeding via allele mining in the base population. Therefore, MP-RMPs such as BRP13R emerge as multipurpose resources for efcient gene discovery and deployment for breeding sorghum cultivars adapted to tropical soils.
650 $aGene
650 $aGenética Vegetal
650 $aMelhoramento Genético Vegetal
650 $aSorgo
653 $aSeleção genômica
700 1 $aMENEZES, C. B. de
700 1 $aSOUSA, S. M. de
700 1 $aGUIMARÃES, C. T.
700 1 $aCARNEIRO, P. C. S.
700 1 $aSCHAFFERT, R. E.
700 1 $aKOCHIAN, L. V.
700 1 $aHUFNAGEL, B.
700 1 $aPASTINA, M. M.
700 1 $aMAGALHAES, J. V. de
773 $tTheoretical and Applied Genetics$gv. 134, p. 295-312, 2021.
Download
Esconder MarcMostrar Marc Completo |
|
Registro original: |
Embrapa Milho e Sorgo (CNPMS) |
|
|
Biblioteca |
ID |
Origem |
Tipo/Formato |
Classificação |
Cutter |
Registro |
Volume |
Status |
URL |
Voltar
|
|
|
| Registros recuperados : 53 | |
| 1. |  | CANIATO, F. F.; GUIMARAES, C. T.; SCHAFFERT, R. E.; KOCHIAN, L. V.; MAGALHAES, J. V. D. Association mapping for aluminum tolerance in candidate regions of the Altsb locus in sorghum. In: CONGRESSO BRASILEIRO DE GENÉTICA, 55., 2009, Águas de Lindóia, SP. Resumos... Ribeirão Preto: Sociedade Brasileira de Genética, 2009. p. 150.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Milho e Sorgo. |
|    |
| 3. | | PINEROS, M. A.; SHAFF, J. E.; MANSLANK, H. S.; ALVES, V. M. C.; KOCHIAN, L. V. Aluminum resistance in maize cannot be solely explained by root organic acid exudation. A comparative physiological study Plant Physiology, Bethesda, v. 137, n. 1, p. 231-241, 2005.| Tipo: Artigo em Periódico Indexado |
| Biblioteca(s): Embrapa Milho e Sorgo. |
|  |
| 8. | | MAGALHAES, J. V.; SOUSA, S. M. de; GUIMARAES, C. T.; KOCHIAN, L. V. The role of root morphology and architecture in phosphorus acquisiton: physiological, genetic, and molecular basis. In: HOSSAIN, M. A.; KAMIYA, T.; BURRITT, D. J.; PHAN TRAN, L.-S.; FUJIWARA, T. (Ed.). Plant macronutrient use efficiency: molecular and genomic perspectives in crop plants. London: Academic Press, 2017. cap. 7, p. 123-147.| Tipo: Capítulo em Livro Técnico-Científico |
| Biblioteca(s): Embrapa Milho e Sorgo. |
| |
| 10. | | ALVES, V. M. C.; MAGALHAES, J. V. de; KOCHIAN, L. V.; PARENTONI, S. N.; PAIVA, E.; GARVIN, D. F. Acumulação de alumínio em ápices de raízes de milho. In: REUNIAO BRASILEIRA DE FERTILIDADE DO SOLO E NUTRICAO DE PLANTAS, 24.; REUNIAO BRASILEIRA SOBRE MICORRIZAS, 8.; SIMPOSIO BRASILEIRO DE MICROBIOLOGIA DO SOLO, 6.; REUNIAO BRASILEIRA DE BIOLOGIA DO SOLO, 3., 2000, Santa Maria, RS. Biodinâmica do solo: guia do congressista. [Viçosa, MG]: Sociedade Brasileira de Ciência do Solo; [São Paulo]: Sociedade Brasileira de Microbiologia; Santa Maria, RS: Universidade Federal de Santa Maria, Departamento de Solos, 2000. Fertbio 2000. p. 151.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Milho e Sorgo. |
| |
| 11. | | CANIATO, F. F.; HAMBLIN, M. T.; GUIMARAES, C. T.; ZHANG, Z.; SCHAFFERT, R. E.; KOCHIAN, L. V.; MAGALHAES, J. V. Association mapping provides insights into the origin and the fine structure of the sorghum aluminum tolerance locus, AltSB. Plos One, San Francisco, v. 9, n. 1, p. 1-12, 2014.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
| Biblioteca(s): Embrapa Milho e Sorgo. |
| |
| 12. | | LIU, J.; LUO, X.; SHAFF, J.; LIANG, C.; JIA, X.; LI, Z.; MAGALHAES, J.; KOCHIAN, L. V. A promoter-swap strategy between the AtALMT and AtMATE genes increased Arabidopsis aluminum resistance and improved carbon-use efficiency for aluminum resistance. The Plant Journal, Oxford, v. 71, p. 327-337, 2012.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
| Biblioteca(s): Embrapa Milho e Sorgo. |
| |
| 13. | | PAPERNIK, L. A.; BETHEA, A. S.; SINGLETON, T. E.; MAGALHAES, J. V.; GARVIN, D. F.; KOCHIAN, L. V. Physiological basis of reduced Al tolerance in ditelosomic lines of Chinese spring wheat. Planta, New York, v. 212, n. 5/6, p. 829-834, 2001.| Tipo: Artigo em Periódico Indexado |
| Biblioteca(s): Embrapa Milho e Sorgo. |
| |
| 14. | | ALVES, V. M. C.; MAGALHAES, J. V. de; SHAFF, J.; SCHAFFERT, R. E.; GUIMARAES, C. T.; KOCHIAN, L. V. Exsudação de citrato e tolerânica ao alumínio em sorgo. In: CONGRESSO NACIONAL DE MILHO E SORGO, 26.; SIMPÓSIO BRASILEIRO SOBRE A LAGARTA-DO-CARTUCHO, SPODOPTERA FRUGIPERDA, 2.; SIMPÓSIO SOBRE COLLETOTRICHUM GRAMINICOLA, 1., 2006, Belo Horizonte. Inovação para sistemas integrados de produção: trabalhos apresentados. [Sete Lagoas]: ABMS, 2006. 1 CD-ROM.| Tipo: Artigo em Anais de Congresso |
| Biblioteca(s): Embrapa Milho e Sorgo. |
| |
| 15. | | HUFNAGEL, B.; GUIMARÃES, C. T.; CRAFT, E. J.; SHAFF, J. E.; SCHAFFERT, R. E.; KOCHIAN, L. V.; MAGALHAES, J. V. Exploiting sorghum genetic diversity for enhanced aluminum tolerance: allele mining based on the AltSB locus. Scientific Reports, v. 8, p. 1-13, July 2018. Article number: 10094.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
| Biblioteca(s): Embrapa Milho e Sorgo. |
| |
| 16. | | CANÇADO, G. M. A.; PINEROS, M. A.; MARON, L. G.; SHAFF, J.; CAMARGO, S. R.; MENOSSI, M.; ALVES, V. M. C.; KOCHIAN, L. V. Cloning and characterization of an ALMT1 homologue gene in Maize. In: INTERNATIONAL PLANT & ANIMAL GENOMES CONFERENCE, 15., 2007, San Diego, CA. [Proceedings...]. [S. l.: s.n.], 2007.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Milho e Sorgo. |
| |
| 17. | | LANA, U. G. D. P.; GUIMARAES, C. T.; ALVES, V. M. C.; SCHAFFERT, R. E.; KOCHIAN, L. V.; MAGALHAES, J. V. D. Caracterização molecular de um membro da família Multidrug and Toxic Compound Extrusion (MATE) que confere tolerância ao alumínio em sorgo. In: CONGRESSO BRASILEIRO DE GENÉTICA, 55., 2009, Águas de Lindóia, SP. Resumos... Ribeirão Preto: Sociedade Brasileira de Genética, 2009. p. 53.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Milho e Sorgo. |
| |
| 18. | | LANA, U. G. de P.; GUIMARAES, C. T.; ALVES, V. M. C.; SCHAFFERT, R. E.; KOCHIAN, L. V.; MAGALHAES, J. V. de. Caracterização molecular do gene SbMATE, principal responsável pela tolerância ao alumínio em sorgo. In: CONGRESSO NACIONAL DE MILHO E SORGO, 27.; SIMPOSIO BRASILEIRO SOBRE A LAGARTA-DO-CARTUCHO, SPODOPTERA FRUGIPERDA, 3.; WORKSHOP SOBRE MANEJO E ETIOLOGIA DA MANCHA BRANCA DO MILHO, 2008, Londrina. Agroenergia, produção de alimentos e mudanças climáticas: desafios para milho e sorgo: trabalhos e palestras. [Londrina]: IAPAR; [Sete Lagoas]: Embrapa Milho e Sorgo, 2008. 1 CD-ROM.| Tipo: Artigo em Anais de Congresso / Nota Técnica |
| Biblioteca(s): Embrapa Milho e Sorgo. |
| |
| 19. | | LIU, Z.; QIN, T.; ATIENZA, M.; ZHAO, Y.; NGUYEN, H.; SHENG, H.; OLUKAYODE, O.; SONG, H.; PANJVANI, K.; MAGALHAES, J. V. de; LUCAS, W. J.; KOCHIAN, L. V. Constitutive basis of root system architecture: uncovering a promising trait for breeding nutrient-and drought-resilient crops. aBIOTECH, v. 4, p. 315–331, 2023.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 3 |
| Biblioteca(s): Embrapa Milho e Sorgo. |
| |
| 20. | | MATONYEI, T. K.; CHEPROT, R. K.; LIU, J.; PIÑEROS, M. A.; SHAFF, J. E.; GUDU, S.; WERE, B.; MAGALHAES, J. V.; KOCHIAN, L. V. Physiological and molecular analysis of aluminum tolerance in selected Kenyan maize lines. Plant and Soil, Dordrecht, v. 377, p. 357-367, 2014.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
| Biblioteca(s): Embrapa Milho e Sorgo. |
| |
| Registros recuperados : 53 | |
|
| Nenhum registro encontrado para a expressão de busca informada. |
|
|
