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Registro Completo |
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Biblioteca(s): |
Embrapa Mandioca e Fruticultura. |
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Data corrente: |
25/03/2008 |
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Data da última atualização: |
05/07/2023 |
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Tipo da produção científica: |
Artigo em Periódico Indexado |
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Autoria: |
LESCOT, M.; PIFFANELLI, P.; CIAMPI, A. Y.; RUIZ, M.; BLANC, G.; LEEBENS-MACK, J.; SILVA, F. R. da; SANTOS, C. M. R.; D'HONT, A.; GARSMEUR, O.; VILARINHOS, A. D.; KANAMORI, H.; MATSUMOTO, T.; RONNING, C. M.; CHEUNG, F.; HAAS, B. J.; ALTHOFF, R.; ARBOGAST, T.; HIRE, E.; PAPPAS JUNIOR, G.; SASAKI, T.; SOUZA JUNIOR, M. T.; MILLER, R. N. G.; GLASZMANN, J. C.; TOWN, C. D. |
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Afiliação: |
Magali Lescot, CIRAD/IBSM; Pietro Piffanelli, CIRAD/PADANO; Ana Y. Ciampi, CENARGEN; Manuel Ruiz, CIRAD; Guillaume Blanc, IGS; Jim Leebens-Mack, University of Georgia; Felipe R. da Silva, CENARGEN; Candice M. R. Santos, CENARGEN; Angélique D'Hont, CIRAD; Olivier Garsmeur, CIRAD; Alberto Duarte Vilarinhos, CNPMF; Hiroyuki Kanamori, RGP; Takashi Matsumoto, RGP; Catherine M. Ronning, J. Craig Venter Institute; Foo Cheung, J. Craig Venter Institute; Brian J. Haas, J. Craig Venter Institute; Ryan Althoff, J. Craig Venter Institute; Tammy Arbogast, J. Craig Venter Institute; Erin Hine, J. Craig Venter Institute; Georgios J. Pappas Junior, UCB; Takuji Sasaki, RGP; Manoel T. Souza Junior, CENARGEN; Robert N. G. Miller, UCB; Jean-Christophe Glaszmann, CIRAD; Christopher D. Town, J. Craig Venter Institute. |
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Título: |
Insights into the Musa genome: syntenic relationships to rice and between Musa species. |
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Ano de publicação: |
2007 |
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Fonte/Imprenta: |
BMC Genomics, London, v. 9, 2007. |
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Descrição Física: |
il. |
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ISSN: |
1471-2164 |
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Idioma: |
Inglês |
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Conteúdo: |
Musa species (Zingiberaceae, Zingiberales) including bananas and plantains are collectively the fourth most important crop in developing countries. Knowledge concerning Musa genome structure and the origin of distinct cultivars has greatly increased over the last few years. Until now, however, no large-scale analyses of Musa genomic sequence have been conducted. This study compares genomic sequence in two Musa species with orthologous regions in the rice genome.We produced 1.4 Mb of Musa sequence from 13 BAC clones, annotated and analyzed them along with 4 previously sequenced BACs. The 443 predicted genes revealed that Zingiberales genes share GC content and distribution characteristics with eudicot and Poaceae genomes. Comparison with rice revealed microsynteny regions that have persisted since the divergence of the Commelinid orders Poales and Zingiberales at least 117 Mya. The previously hypothesized large-scale duplication event in the common ancestor of major cereal lineages within the Poaceae was verified. The divergence time distributions for Musa-Zingiber (Zingiberaceae, Zingiberales) orthologs and paralogs provide strong evidence for a large-scale duplication event in the Musa lineage after its divergence from the Zingiberaceae approximately 61 Mya. Comparisons of genomic regions from M. acuminata and M. balbisiana revealed highly conserved genome structure, and indicated that these genomes diverged circa 4.6 Mya. These results point to the utility of comparative analyses between distantly-related monocot species such as rice and Musa for improving our understanding of monocot genome evolution. Sequencing the genome of M. acuminata would provide a strong foundation for comparative genomics in the monocots. In addition a genome sequence would aid genomic and genetic analyses of cultivated Musa polyploid genotypes in research aimed at localizing and cloning genes controlling important agronomic traits for breeding purposes. MenosMusa species (Zingiberaceae, Zingiberales) including bananas and plantains are collectively the fourth most important crop in developing countries. Knowledge concerning Musa genome structure and the origin of distinct cultivars has greatly increased over the last few years. Until now, however, no large-scale analyses of Musa genomic sequence have been conducted. This study compares genomic sequence in two Musa species with orthologous regions in the rice genome.We produced 1.4 Mb of Musa sequence from 13 BAC clones, annotated and analyzed them along with 4 previously sequenced BACs. The 443 predicted genes revealed that Zingiberales genes share GC content and distribution characteristics with eudicot and Poaceae genomes. Comparison with rice revealed microsynteny regions that have persisted since the divergence of the Commelinid orders Poales and Zingiberales at least 117 Mya. The previously hypothesized large-scale duplication event in the common ancestor of major cereal lineages within the Poaceae was verified. The divergence time distributions for Musa-Zingiber (Zingiberaceae, Zingiberales) orthologs and paralogs provide strong evidence for a large-scale duplication event in the Musa lineage after its divergence from the Zingiberaceae approximately 61 Mya. Comparisons of genomic regions from M. acuminata and M. balbisiana revealed highly conserved genome structure, and indicated that these genomes diverged circa 4.6 Mya. These results point to the utility of comparative a... Mostrar Tudo |
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Palavras-Chave: |
Species. |
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Categoria do assunto: |
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Marc: |
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245 $aInsights into the Musa genome$bsyntenic relationships to rice and between Musa species.$h[electronic resource]
260 $c2007
300 $cil.
520 $aMusa species (Zingiberaceae, Zingiberales) including bananas and plantains are collectively the fourth most important crop in developing countries. Knowledge concerning Musa genome structure and the origin of distinct cultivars has greatly increased over the last few years. Until now, however, no large-scale analyses of Musa genomic sequence have been conducted. This study compares genomic sequence in two Musa species with orthologous regions in the rice genome.We produced 1.4 Mb of Musa sequence from 13 BAC clones, annotated and analyzed them along with 4 previously sequenced BACs. The 443 predicted genes revealed that Zingiberales genes share GC content and distribution characteristics with eudicot and Poaceae genomes. Comparison with rice revealed microsynteny regions that have persisted since the divergence of the Commelinid orders Poales and Zingiberales at least 117 Mya. The previously hypothesized large-scale duplication event in the common ancestor of major cereal lineages within the Poaceae was verified. The divergence time distributions for Musa-Zingiber (Zingiberaceae, Zingiberales) orthologs and paralogs provide strong evidence for a large-scale duplication event in the Musa lineage after its divergence from the Zingiberaceae approximately 61 Mya. Comparisons of genomic regions from M. acuminata and M. balbisiana revealed highly conserved genome structure, and indicated that these genomes diverged circa 4.6 Mya. These results point to the utility of comparative analyses between distantly-related monocot species such as rice and Musa for improving our understanding of monocot genome evolution. Sequencing the genome of M. acuminata would provide a strong foundation for comparative genomics in the monocots. In addition a genome sequence would aid genomic and genetic analyses of cultivated Musa polyploid genotypes in research aimed at localizing and cloning genes controlling important agronomic traits for breeding purposes.
653 $aSpecies
700 1 $aPIFFANELLI, P.
700 1 $aCIAMPI, A. Y.
700 1 $aRUIZ, M.
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700 1 $aD'HONT, A.
700 1 $aGARSMEUR, O.
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700 1 $aALTHOFF, R.
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700 1 $aMILLER, R. N. G.
700 1 $aGLASZMANN, J. C.
700 1 $aTOWN, C. D.
773 $tBMC Genomics, London$gv. 9, 2007.
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Embrapa Mandioca e Fruticultura (CNPMF) |
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| Registros recuperados : 173 | |
| 87. |  | MASSRUHÁ, S. M. F. S.; SOUZA, E. P. de; ROMANI, L. A. S.; CRUZ, S. A. B. Virtual services for agricultural technology transfer. In: EUROPEAN CONFERENCE OF THE EUROPEAN FEDERATION FOR INFORMATION TECHNOLOGY IN AGRICULTURE, FOOD AND THE ENVIRONMENT - EFITA 99, 2., September 27-30 1999, Bonn, Germany. Role and potential of IT, intranet and internet for advisory services. Bonn: Universität Bonn-ILB, 1999. p. 53-62.| Biblioteca(s): Embrapa Agricultura Digital. |
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| 88. | | NAKAO, A. H.; CARVALHO, M. de P. e; SOUZA, F. H.; CRUZ, S. S. da; MONTANARI, R. Rotação e sucessão de culturas como práticas de conservação do solo no Município de Jales, SP. Cadernos de Ciência & Tecnologia, Brasília, DF, v. 32, n. 1/2, p. 153-166, jan./ago. 2015.| Biblioteca(s): Embrapa Unidades Centrais. |
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| 90. | | SANDINI, I. E.; PACENTCHUK, F.; HUNGRIA, M.; NOGUEIRA, M. A.; CRUZ, S. P. da; NAKATANI, A. S.; ARAUJO, R. S. Seed Inoculation with Pseudomonas fluorescens Promotes Growth, Yield and Reduces Nitrogen Application in Maize. International Journal of Agriculture & Biology, v. 22, n. 6, p. 1369-1375, 2019. Artigo de acesso aberto.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: B - 2 |
| Biblioteca(s): Embrapa Soja. |
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| 92. | | LIMA, J. A. S.; MENEZES, W. A.; TAVARES, S. C. C. de H.; CRUZ, S. C. da. Sobrevivencia e virulencia de Trichoderma sp. em duas condicoes de armazenamento. Fitopatologia Brasleira, Brasília, DF, v. 23, p. 328, ago. 1998. Suplemento. Edição dos Resumos do 31 Congresso Brasileiro de Fitopatologia, Fortaleza, 1998.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Semiárido. |
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| 93. | | MASSRUHA, S. M. F. S.; DUTRA, J. P.; CRUZ, S. A. B. da; SANDRI, S.; WAINER, J. Uma plataforma orientada a objetos para desenvolvimento de sistemas especialistas de diagnóstico de doenças via Web. In: CONGRESSO BRASILEIRO DE AGROINFORMÁTICA, 6., 2007, São Pedro, SP. Anais... Campinas: Embrapa Informática Agropecuária, 2007. p. 176-180. SBIAgro 2007.| Tipo: Artigo em Anais de Congresso / Nota Técnica |
| Biblioteca(s): Embrapa Agricultura Digital. |
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| 94. | | IDE, F.; CRUZ, S.; SANTOS, A.; YAMAGISHI, M.; VACARI, I.; BURLE, M.; SIAS, I.; RICARDO, F.; BENITO, N.; GONZAGA, V.; JOSÉ, S.; PÁDUA, J. Alelo - Gestor Integrado de Recursos Genéticos. Versão 0.49. Campinas: Embrapa Informática Agropecuária, 2013. 1 CD-ROM.| Biblioteca(s): Embrapa Agricultura Digital. |
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| 95. | | IDE, F.; CRUZ, S.; SANTOS, A.; YAMAGISHI, M.; VACARI, I.; BURLE, M.; SIAS, I.; RICARDO, F.; BENITO, N.; GONZAGA, V.; JOSÉ, S.; PÁDUA, J. Alelo - Gestor Integrado de Recursos Genéticos. Versão 0.51. Campinas: Embrapa Informática Agropecuária, 2014. 1 CD-ROM.| Biblioteca(s): Embrapa Agricultura Digital. |
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| 97. | | OLIVEIRA, A. P. C. de; GUERRA, J. G. M.; NEVES, M. C. P.; EVANGELISTA, S. R. M.; CRUZ, S. A.; ALMEIDA, D. L. de. Banco de dados de especies leguminosas para adubacao verde. In: CONGRESSO LATINO AMERICANO DE CIENCIA DO SOLO, 13.; REUNIAO BRASILEIRA DE BIOLOGIA DO SOLO, 1.; SIMPOSIO BRASILEIRO SOBRE MICROBIOLOGIA DO SOLO, 4., ago. 1996, Aguas de Lindoia-SP. Resumos... Aguas de Lindoia, SP: USP / SLCS / SBCS, 1996. Comissao 4. Trabalho n.53. 1 CD-ROM.| Biblioteca(s): Embrapa Agrobiologia. |
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| 98. | | MATRANGOLO, W. J. R.; SILVA, I. H. F. da; ALMEIDA, L. G.; CRUZ, S. C. B; MALTA, P. da C. C.; GOMES, S. X. Aspectos ecológicos de Cratylia argentea na região central de Minas Gerais. Cadernos de Agroecologia, v. 13, n. 1, jul. 2018. Edição dos anais do VI Congresso Latino-Americano de Agroecologia, Brasília, DF, 2017.| Tipo: Artigo em Anais de Congresso |
| Biblioteca(s): Embrapa Milho e Sorgo. |
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| 99. | | CRUZ, S. C. S.; SILVA, J. V. de S.; ALOVISI, A. M. T.; KURIHARA, C. H.; SOARES, G. F.; DUARTE, T. C. Adubação fosfatada no feijoeiro cultivado sob palhada de Brachiaria brizanta c.v Marandú. In: CONGRESSO BRASILEIRO DE CIÊNCIA DO SOLO, 35., 2015, Natal. O solo e suas múltiplas funções: anais. Natal: Sociedade Brasileira de Ciência do Solo, 2015.| Tipo: Artigo em Anais de Congresso |
| Biblioteca(s): Embrapa Agropecuária Oeste. |
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| 100. | | SILVA, J. V. de S.; CRUZ, S. C. S.; ALOVISI, A. M. T.; KURIHARA, C. H.; XAVIER, W. D.; MARTINEZ, M. A. Adubação fosfatada no feijoeiro cultivado sob palhada de Brachiaria brizantha cv. Marandu. Revista Ceres, v. 65, n.2, p. 181-188, mar/abr, 2018.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: B - 1 |
| Biblioteca(s): Embrapa Agropecuária Oeste. |
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| Registros recuperados : 173 | |
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| Nenhum registro encontrado para a expressão de busca informada. |
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