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 | Acesso ao texto completo restrito à biblioteca da Embrapa Mandioca e Fruticultura. Para informações adicionais entre em contato com cnpmf.biblioteca@embrapa.br. |
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Registro Completo |
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Biblioteca(s): |
Embrapa Mandioca e Fruticultura. |
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Data corrente: |
16/07/2013 |
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Data da última atualização: |
16/07/2013 |
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Tipo da produção científica: |
Artigo em Periódico Indexado |
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Autoria: |
RODRIGUEZ, M. A. D.; HERAI, R.; WAALWIJK, C.; YAMAGISHI, M. E. B.; GIACHETTO, P. F.; FERREIRA, G. B.; SOUZA, M.; KEMA, G. H. J. |
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Afiliação: |
MIGUEL ANGEL DITA RODRIGUEZ, CNPMF; R. HERAI, UNICAMP; C. WAALWIJK, Plant Research International B. V.; MICHEL EDUARDO BELEZA YAMAGISHI, CNPTIA; POLIANA FERNANDA GIACHETTO, CNPTIA; GILVAN BARBOSA FERREIRA, CNPA; M. SOUZA; G.H.J. KEMA, Plant Research International B. V. |
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Título: |
Comparative transcriptome analyses and genome assembly of fusarium oxysporum f. sp. cubense. |
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Ano de publicação: |
2013 |
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Fonte/Imprenta: |
Acta Horticulturae, n. 986, p. 165-168, 2013. |
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Páginas: |
4p. |
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ISSN: |
0567-7572 |
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Idioma: |
Inglês |
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Notas: |
Trabalho apresentado no ISHS - ProMusa Symposium on Bananas and Plantains: Towards Sustainable Global Production and Improved Uses. |
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Conteúdo: |
Fusarium oxysporum f. sp. cubense (Foc), the causal agent of Fusarium wilt of banana, is a highly destructive and genetically diverse pathogen. Despite its economic importance, genomic information about Foc is limited and no transcriptomic analyses have been reported so far. By using 454 sequencing technology, we generated >2.5 million expressed sequenced tags (ESTs) from four Foc isolates representing different vegetative compatibility groups (VCGs) and races that infect banana: race 1 (R1, VCG unknown but different from the others here described), race 2 (R2, VCG 0124), subtropical race 4 (SR4, VCG 0120) and tropical race 4 (TR4, VCG 01213). The ESTs were obtained from libraries prepared from mRNA extracted from three physiological states (mycelium, conidia and germinated conidia), which were pooled in a 2:2:1 ratio. Most genes are represented in all libraries, but in silico comparative analyses identified a set of unique ESTs for each isolate (689 for R1, 974 for R2, 296 for SR4 and 555 for TR4), which are excellent candidates for diagnostics development, future plant-pathogen interaction studies and functional analyses. In subsequent analyses, a 40× sequencing-coverage (Illumina single reads) of TR4 genomic DNA was assembled in a de novo based methodology, resulting in a 45.5 Mb genome. Preliminary analyses show a high colinearity of EST and genomic data that significantly contributes to the quality of the assembly. |
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Thesagro: |
Banana; Fusariose; Fusarium. |
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Thesaurus Nal: |
Bananas; Fusarium oxysporum f. sp. cubense; Fusarium wilt; Genome. |
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Categoria do assunto: |
-- |
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Marc: |
LEADER 02421naa a2200325 a 4500
001 1962176
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008 2013 bl uuuu u00u1 u #d
022 $a0567-7572
100 1 $aRODRIGUEZ, M. A. D.
245 $aComparative transcriptome analyses and genome assembly of fusarium oxysporum f. sp. cubense.
260 $c2013
300 $a4p.
500 $aTrabalho apresentado no ISHS - ProMusa Symposium on Bananas and Plantains: Towards Sustainable Global Production and Improved Uses.
520 $aFusarium oxysporum f. sp. cubense (Foc), the causal agent of Fusarium wilt of banana, is a highly destructive and genetically diverse pathogen. Despite its economic importance, genomic information about Foc is limited and no transcriptomic analyses have been reported so far. By using 454 sequencing technology, we generated >2.5 million expressed sequenced tags (ESTs) from four Foc isolates representing different vegetative compatibility groups (VCGs) and races that infect banana: race 1 (R1, VCG unknown but different from the others here described), race 2 (R2, VCG 0124), subtropical race 4 (SR4, VCG 0120) and tropical race 4 (TR4, VCG 01213). The ESTs were obtained from libraries prepared from mRNA extracted from three physiological states (mycelium, conidia and germinated conidia), which were pooled in a 2:2:1 ratio. Most genes are represented in all libraries, but in silico comparative analyses identified a set of unique ESTs for each isolate (689 for R1, 974 for R2, 296 for SR4 and 555 for TR4), which are excellent candidates for diagnostics development, future plant-pathogen interaction studies and functional analyses. In subsequent analyses, a 40× sequencing-coverage (Illumina single reads) of TR4 genomic DNA was assembled in a de novo based methodology, resulting in a 45.5 Mb genome. Preliminary analyses show a high colinearity of EST and genomic data that significantly contributes to the quality of the assembly.
650 $aBananas
650 $aFusarium oxysporum f. sp. cubense
650 $aFusarium wilt
650 $aGenome
650 $aBanana
650 $aFusariose
650 $aFusarium
700 1 $aHERAI, R.
700 1 $aWAALWIJK, C.
700 1 $aYAMAGISHI, M. E. B.
700 1 $aGIACHETTO, P. F.
700 1 $aFERREIRA, G. B.
700 1 $aSOUZA, M.
700 1 $aKEMA, G. H. J.
773 $tActa Horticulturae$gn. 986, p. 165-168, 2013.
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Embrapa Mandioca e Fruticultura (CNPMF) |
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| 2. |  | GIACHETTO, P. F. Transcriptoma do carrapato dos bovinos. In: ANDREOTI, R.; GARCIA, M. V.; KOLLER, W. W. (Ed.). Carrapatos na cadeia produtiva de bovinos. Brasília, DF: Embrapa, 2019. cap. 16, p. 205-222.| Tipo: Capítulo em Livro Técnico-Científico |
| Biblioteca(s): Embrapa Agricultura Digital. |
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| 4. | | ANDREOTTI, R.; GIACHETTO, P. F. Phylogenetic of phylogeographic relations of Rhipicephalus microplus ( Acari: ixodidae) in Brazil. In: AMERICAN ASSOCIATION OF VETERINARY PARASITOLOGISTS ANNUAL MEETING, 60.; LIVESTOCK INSECT WORKERS CON-FERENCE, 59.; INTERNATIONAL SYMPOSIUM ON ECTOPARASITES OF PETS, 13.,2015, Boston, MA. Parasitic Evolution Scientific Revolu-tion: Proceedings... Boston, MA: American Association of Veterinary Parasitologists, 2015. Resumo 146. 1 p.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Gado de Corte. |
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| 5. | | GIACHETTO, P. F.; HIGA, R. H. Bioinformática aplicada à agricultura. In: MASSRUHÁ, S. M. F. S.; LEITE, M. A. de A.; LUCHIARI JUNIOR, A.; ROMANI, L. A. S. (Ed.). Tecnologias da informação e comunicação e suas relações com a agricultura. Brasília, DF: Embrapa, 2014. Cap. 4. p. 67-83.| Tipo: Capítulo em Livro Técnico-Científico |
| Biblioteca(s): Embrapa Agricultura Digital. |
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| 6. | | GIACHETTO, P. F.; HIGA, R. H. Bioinformatics applied to agriculture. In: MASSRUHÁ, S. M. F. S.; LEITE, M. A. de A.; LUCHIARI JUNIOR, A.; ROMANI, L. A. S. (Ed.). Information and communication technologies and their relations with agriculture. Brasília, DF: Embrapa, 2016. ch. 4, p. 67-86.| Tipo: Capítulo em Livro Técnico-Científico |
| Biblioteca(s): Embrapa Agricultura Digital. |
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| Registros recuperados : 125 | |
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