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Registro Completo |
Biblioteca(s): |
Embrapa Mandioca e Fruticultura. |
Data corrente: |
12/02/2008 |
Data da última atualização: |
24/07/2023 |
Tipo da produção científica: |
Artigo em Periódico Indexado |
Autoria: |
TARGON, M. L. P. N.; TAKITA, M. A.; AMARAL, A. M. do; SOUZA, A. A. de; LOCALI-FABRIS, E. C.; DORTA, S. de O.; BORGES, K. M.; SOUZA, J. M. de; RODRIGUES, C. M.; LUCHETA, A. R.; FREITAS-ÁSTUA, J.; MACHADO, M. A. |
Afiliação: |
Maria Luísa P. Natividade Targon, APTA; Marco Aurélio Takita, APTA; Alexandre M. do Amaral, CENARGEN; Alessandra A. de Souza, APTA; Eliane Cristina Locali-Fabris, APTA; Sílvia de Oliveira Dorta, APTA; Kleber Martins Borges, APTA; Juliana Mendonça de Souza, APTA; Carolina Munari Rodrigues, APTA; Adriano Reis Lucheta, APTA; Juliana Freitas-Astúa, CNPMF; Marcos Antonio Machado, APTA. |
Título: |
CitEST libraries. |
Ano de publicação: |
2007 |
Fonte/Imprenta: |
Genetics and Molecular Biology, Ribeirão Preto, v. 30, n. 3, p. 1019-1023, 2007. |
ISSN: |
1415-4757 |
Idioma: |
Inglês |
Conteúdo: |
In order to obtain a better understanding of what is citrus, 33 cDNA libraries were constructed from different citrus species and genera. Total RNA was extracted from fruits, leaves, flowers, bark, seeds and roots, and subjected or not to different biotic and abiotic stresses (pathogens and drought) and at several developmental stages. To identify putative promoter sequences, as well as molecular markers that could be useful for breeding programs, one shotgun library was prepared from sweet orange (Citrus sinensis var. Olimpia). In addition, EST libraries were also constructed for a citrus pathogen, the oomycete Phythophthora parasitica in either virulent or avirulent form. A total of 286,559 cDNA clones from citrus were sequenced from their 5 end, generating 242,790 valid reads of citrus. A total of 9,504 sequences were produced in the shotgun library and the valid reads were assembled using CAP3. In this procedure, we obtained 1,131 contigs and 4,083 singletons. A total of 19,200 cDNA clones from P. parasitica were sequenced, resulting in 16,400 valid reads. The number of ESTs generated in this project is, to our knowledge, the largest citrus sequence database in the world. |
Palavras-Chave: |
ESTs; Phytopathogen; Shotgun. |
Thesaurus Nal: |
Citrus. |
Categoria do assunto: |
-- |
Marc: |
LEADER 02025naa a2200313 a 4500 001 1654649 005 2023-07-24 008 2007 bl uuuu u00u1 u #d 022 $a1415-4757 100 1 $aTARGON, M. L. P. N. 245 $aCitEST libraries.$h[electronic resource] 260 $c2007 520 $aIn order to obtain a better understanding of what is citrus, 33 cDNA libraries were constructed from different citrus species and genera. Total RNA was extracted from fruits, leaves, flowers, bark, seeds and roots, and subjected or not to different biotic and abiotic stresses (pathogens and drought) and at several developmental stages. To identify putative promoter sequences, as well as molecular markers that could be useful for breeding programs, one shotgun library was prepared from sweet orange (Citrus sinensis var. Olimpia). In addition, EST libraries were also constructed for a citrus pathogen, the oomycete Phythophthora parasitica in either virulent or avirulent form. A total of 286,559 cDNA clones from citrus were sequenced from their 5 end, generating 242,790 valid reads of citrus. A total of 9,504 sequences were produced in the shotgun library and the valid reads were assembled using CAP3. In this procedure, we obtained 1,131 contigs and 4,083 singletons. A total of 19,200 cDNA clones from P. parasitica were sequenced, resulting in 16,400 valid reads. The number of ESTs generated in this project is, to our knowledge, the largest citrus sequence database in the world. 650 $aCitrus 653 $aESTs 653 $aPhytopathogen 653 $aShotgun 700 1 $aTAKITA, M. A. 700 1 $aAMARAL, A. M. do 700 1 $aSOUZA, A. A. de 700 1 $aLOCALI-FABRIS, E. C. 700 1 $aDORTA, S. de O. 700 1 $aBORGES, K. M. 700 1 $aSOUZA, J. M. de 700 1 $aRODRIGUES, C. M. 700 1 $aLUCHETA, A. R. 700 1 $aFREITAS-ÁSTUA, J. 700 1 $aMACHADO, M. A. 773 $tGenetics and Molecular Biology, Ribeirão Preto$gv. 30, n. 3, p. 1019-1023, 2007.
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3. | | KUBO, K. S.; FREITAS-ÁSTUA, J.; KITAGIMA, E. W. Detecção do Clerodendron chlorotic sport virus in planta e no ácaro vetor. Summa Phytopathologica, Botucatu, v. 34, , p. 97, fev. 2008. Suplemento. Edição dos Resumos do XXXI Congresso Paulista de Fitopatologia, Campinas, fev. 2008.
R 301Tipo: Resumo em Anais de Congresso |
Biblioteca(s): Embrapa Mandioca e Fruticultura. |
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Biblioteca(s): Embrapa Mandioca e Fruticultura. |
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7. | | BASTIANEL, M.; NOVELLI, V. M.; FREITAS-ASTUA, J. de. Field assessments reveal different levels of susceptibility among mandarins and hybrids to Citrus Leprosis Virus c. In: CONFERENCE INTERNATIONAL ORGANIZATION CITRUS VIROLOGISTS, 18., Campinas, SP, 2010. Proceedings... Campinas: IOCV, 2010. 1 CD-ROM. 129.PS2
Publicado também em: Citrus Research & Technology, Cordeirópolis, v. 31, Suplemento, 2010Tipo: Resumo em Anais de Congresso |
Biblioteca(s): Embrapa Mandioca e Fruticultura. |
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8. | | MASCARENHAS, G.; BARBOSA, C. de J.; KITAJIMA, E. W.; FREITAS-ÁSTUA, J. Alta eficiência de transmissão mecânica e por vetor do vírus da pinta verde (PFGSV) para maracujazeiro. Tropical Plant Pathology, Brasília, DF, v. 34, ago. 2009. Suplemento. Edição dos Resumos do XLII Congresso Brasileiro de Fitopatologia, Rio de Janeiro, ago. 2009. Suplemento. Resumo 911.Tipo: Resumo em Anais de Congresso |
Biblioteca(s): Embrapa Mandioca e Fruticultura. |
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9. | | RODRIGUES, A. S.; BARBOSA, C. de J.; SOARES FILHO, W. dos S.; FREITAS-ASTUA, J. de. Citrus rootstock hybrids tolerants to citrus tristeza virus and Bahia bark scaling disease. In: CONFERENCE INTERNATIONAL ORGANIZATION CITRUS VIROLOGISTS, 18., Campinas, SP, 2010. Proceedings... Campinas: IOCV, 2010. 1 CD-ROM. 106_PS2
Publicado também em: Citrus Research & Technology, Cordeirópolis, v. 31, Suplemento, 2010Tipo: Resumo em Anais de Congresso |
Biblioteca(s): Embrapa Mandioca e Fruticultura. |
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10. | | KITAJIMA, E. W.; CHAGAS, C. M.; HARAKAWA, R.; FREITAS-ASTÚA, J.; RODRIGUES, J. C. V. Citrus leprosis in Florida may have been of the nuclear type. Virus Reviews & Research, Rio de Janeiro, v. 14, p. 90, 2009. Suplemento 1. Trabalho apresentado no XX Encontro Nacional de Virologia, Brasília, DF. Resumo 098.Tipo: Resumo em Anais de Congresso |
Biblioteca(s): Embrapa Mandioca e Fruticultura. |
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11. | | TASSI, A. D.; FREITAS-ASTÚA, J.; JADÃO, A.; KITAJIMA, E. W. Citrus leprosis virus (CILV-C) vector relationship assessed by bean as test plant. Virus Reviews & Research, Rio de Janeiro, v. 14, p. 90, 2009. Suplplement 1. Trabalho apresentado no XX Encontro Nacional de Virologia, Brasília, DF. Resumo 097Tipo: Resumo em Anais de Congresso |
Biblioteca(s): Embrapa Mandioca e Fruticultura. |
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14. | | BASTIANEL, M.; FREITAS-ÁSTUA, J.; NICOLINI, F.; CRISTOFAI-YALY, M.; NOVELLI, V. M.; MACHADO, M. A. Differential gene response of citrus to CiLV. In: INTERNATIONAL CITRUS CONGRESS, 11., 2008, Wuhan, China. Program and abstracts... Wuhan: The International Society of Citriculture, 2008. p. 64. 115Tipo: Resumo em Anais de Congresso |
Biblioteca(s): Embrapa Mandioca e Fruticultura. |
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15. | | ANTONIOLI-LUIZON, R.; FREITAS-ÁSTUA, J.; REZENDE, J. A. M.; MACHADO, M. A.; KITAJIMA, E. W. Detecção específica do vírus da pinta verde do maracujazeiro por RT-PCR. Tropical Plant Pathology, Brasília, DF, v. 34, ago. 2009. Suplemento. Edição dos Resumos do XLII Congresso Brasileiro de Fitopatologia, Rio de Janeiro, ago. 2009. Suplemento. Resumo 907.Tipo: Resumo em Anais de Congresso |
Biblioteca(s): Embrapa Mandioca e Fruticultura. |
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20. | | FREITAS-ÁSTUA, J.; BASTIANEL, M.; NICOLINI, F.; SCHONS, J.; KITAJIMA, E. W.; MACHADO, M. A. Evidences to support that Citrus leprosis virus and its mite vector interact in a circulative - but not propagative - manner. In: INTERNATIONAL CITRUS CONGRESS, 11., 2008, Wuhan, China. Program and abstracts... Wuhan: The International Society of Citriculture, 2008. p. 237-238. P349Tipo: Resumo em Anais de Congresso |
Biblioteca(s): Embrapa Mandioca e Fruticultura. |
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Registros recuperados : 111 | |
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