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| Registros recuperados : 86 | |
| Registros recuperados : 86 | |
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Registro Completo
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Biblioteca(s): |
Embrapa Agricultura Digital. |
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Data corrente: |
29/02/2016 |
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Data da última atualização: |
21/01/2020 |
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Tipo da produção científica: |
Resumo em Anais de Congresso |
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Autoria: |
BELESINI, A. A.; TELLES, B. R.; CASTRO, G. M. de; GIACHETTO, P. F.; VANTINI, J. da S.; CARVALHO, F. M. de S.; CARLIN, S. R.; CAZETTA, J. O.; FERRO, M. I. T.; PINHEIRO, D. G. |
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Afiliação: |
ALINE ANDRUCIOLI BELESINI, FCAV/Unesp; BRUNA ROBIATI TELLES, FCAV/Unesp; GIOVANNI MARQUES DE CASTRO, CNPTIA; POLIANA FERNANDA GIACHETTO, CNPTIA; JULIANA DA SILVA VANTINI, FCAV/Unesp; FLÁVIA MARIA DE SOUZA CARVALHO, FCAV/Unesp; SAMIRA RODRIGUES CARLIN, IAC/Apta; JAIRO OSWALDO CAZETTA, FCAV/Unesp; MARIA INES T. FERRO, FCAV/Unesp; DANIEL GUARIZ PINHEIRO, FCAV/Unesp. |
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Título: |
de novo assembly and transcriptome analysis of sugarcane leaves from contrasting varieties submited to prolonged water stress. |
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Ano de publicação: |
2016 |
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Fonte/Imprenta: |
In: PLANT & ANIMAL GENOME CONFERENCE, 24., 2016, San Diego, CA. [Abstracts...]. San Diego: [s.n.], 2016. |
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Páginas: |
Não paginado. |
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Idioma: |
Inglês |
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Notas: |
PAG 2016. Pôster P0792. |
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Conteúdo: |
Sugarcane is an important crop, major source of sugar and alcohol, accounting for two-thirds of the world's sugar production. In Brazil, the sugarcane culture has expanded to areas with prolonged drought seasons, which is constraining its production. In order to identify genes and molecular process related to sugarcane drought tolerance, we performed de novo assembly and transcriptome analysis of two sugarcane genotypes, one tolerant and other sensitive to water stress, submitted to three water deficit condition (30, 60 and 90 days). The de novo assembly of leaves transcriptome was performed using short reads from Illumina RNA-Seq platform, which produced more than 1 billion reads, which were assembled into 177,509 and 185,153 transcripts sequences for the tolerant and sensitive cultivars, respectively. These transcripts were aligned with Sorghum bicolor, Miscanthus giganteus, Arabidopsis thaliana sequences and sugarcane sequences available in public databases. This analysis allowed the identification of a set of sugarcane genes shared with other species, as well as led to the identification of novel transcripts not cataloged yet. Differential expression analysis between genotypes and among days of water deficit were performed with EdgeR and DESeq. The differentially expressed genes were annotated and categorized using Blast2GO. The terms "enzyme regulator" and "transcription regulator" were highlighted within the differentially expressed genes between the contrasting cultivars, suggesting the importance of gene regulation during water deficit. This study found new molecular patterns, which provided hypotheses on plant response to drought and provided important information about genes involved in drought tolerance response. MenosSugarcane is an important crop, major source of sugar and alcohol, accounting for two-thirds of the world's sugar production. In Brazil, the sugarcane culture has expanded to areas with prolonged drought seasons, which is constraining its production. In order to identify genes and molecular process related to sugarcane drought tolerance, we performed de novo assembly and transcriptome analysis of two sugarcane genotypes, one tolerant and other sensitive to water stress, submitted to three water deficit condition (30, 60 and 90 days). The de novo assembly of leaves transcriptome was performed using short reads from Illumina RNA-Seq platform, which produced more than 1 billion reads, which were assembled into 177,509 and 185,153 transcripts sequences for the tolerant and sensitive cultivars, respectively. These transcripts were aligned with Sorghum bicolor, Miscanthus giganteus, Arabidopsis thaliana sequences and sugarcane sequences available in public databases. This analysis allowed the identification of a set of sugarcane genes shared with other species, as well as led to the identification of novel transcripts not cataloged yet. Differential expression analysis between genotypes and among days of water deficit were performed with EdgeR and DESeq. The differentially expressed genes were annotated and categorized using Blast2GO. The terms "enzyme regulator" and "transcription regulator" were highlighted within the differentially expressed genes between the contrasting cultiv... Mostrar Tudo |
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Palavras-Chave: |
Bioinformática; Cana-de-açúcar; Tolerância à seca; Transcriptoma. |
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Thesaurus NAL: |
Bioinformatics; Drought tolerance; Sugarcane; Transcriptomics; Water stress. |
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Categoria do assunto: |
X Pesquisa, Tecnologia e Engenharia |
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URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/item/140287/1/PAG-p0792.pdf
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Marc: |
LEADER 02858nam a2200349 a 4500
001 2038946
005 2020-01-21
008 2016 bl uuuu u00u1 u #d
100 1 $aBELESINI, A. A.
245 $ade novo assembly and transcriptome analysis of sugarcane leaves from contrasting varieties submited to prolonged water stress.$h[electronic resource]
260 $aIn: PLANT & ANIMAL GENOME CONFERENCE, 24., 2016, San Diego, CA. [Abstracts...]. San Diego: [s.n.]$c2016
300 $aNão paginado.
500 $aPAG 2016. Pôster P0792.
520 $aSugarcane is an important crop, major source of sugar and alcohol, accounting for two-thirds of the world's sugar production. In Brazil, the sugarcane culture has expanded to areas with prolonged drought seasons, which is constraining its production. In order to identify genes and molecular process related to sugarcane drought tolerance, we performed de novo assembly and transcriptome analysis of two sugarcane genotypes, one tolerant and other sensitive to water stress, submitted to three water deficit condition (30, 60 and 90 days). The de novo assembly of leaves transcriptome was performed using short reads from Illumina RNA-Seq platform, which produced more than 1 billion reads, which were assembled into 177,509 and 185,153 transcripts sequences for the tolerant and sensitive cultivars, respectively. These transcripts were aligned with Sorghum bicolor, Miscanthus giganteus, Arabidopsis thaliana sequences and sugarcane sequences available in public databases. This analysis allowed the identification of a set of sugarcane genes shared with other species, as well as led to the identification of novel transcripts not cataloged yet. Differential expression analysis between genotypes and among days of water deficit were performed with EdgeR and DESeq. The differentially expressed genes were annotated and categorized using Blast2GO. The terms "enzyme regulator" and "transcription regulator" were highlighted within the differentially expressed genes between the contrasting cultivars, suggesting the importance of gene regulation during water deficit. This study found new molecular patterns, which provided hypotheses on plant response to drought and provided important information about genes involved in drought tolerance response.
650 $aBioinformatics
650 $aDrought tolerance
650 $aSugarcane
650 $aTranscriptomics
650 $aWater stress
653 $aBioinformática
653 $aCana-de-açúcar
653 $aTolerância à seca
653 $aTranscriptoma
700 1 $aTELLES, B. R.
700 1 $aCASTRO, G. M. de
700 1 $aGIACHETTO, P. F.
700 1 $aVANTINI, J. da S.
700 1 $aCARVALHO, F. M. de S.
700 1 $aCARLIN, S. R.
700 1 $aCAZETTA, J. O.
700 1 $aFERRO, M. I. T.
700 1 $aPINHEIRO, D. G.
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Registro original: |
Embrapa Agricultura Digital (CNPTIA) |
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