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Registro Completo |
Biblioteca(s): |
Embrapa Unidades Centrais. |
Data corrente: |
07/11/2003 |
Data da última atualização: |
29/03/2004 |
Autoria: |
EMBRAPA SEMI-ÁRIDO. |
Título: |
Avaliação do potencial das terras para irrigação no Nordeste (para compatibilização com os recursos hídricos). |
Ano de publicação: |
1994 |
Fonte/Imprenta: |
Brasilia: EMBRAPA-SPI, 1994. |
Descrição Física: |
1 mapa, color., escala 1:2.000.000, 108 cm. x 88 cm. |
Idioma: |
Português |
Palavras-Chave: |
Recursos hídricos. |
Thesagro: |
Agricultura; Aptidão Agrícola; Fertilidade do Solo; Irrigação; Pedologia. |
Categoria do assunto: |
-- |
Marc: |
LEADER 00594nem a2200181 a 4500 001 1094304 005 2004-03-29 008 1994 bl uuuu u0uu1 u #d 100 1 $aEMBRAPA SEMI-ÁRIDO. 245 $aAvaliação do potencial das terras para irrigação no Nordeste (para compatibilização com os recursos hídricos). 260 $aBrasilia: EMBRAPA-SPI$c1994 300 $c1 mapa, color., escala 1:2.000.000, 108 cm. x 88 cm. 650 $aAgricultura 650 $aAptidão Agrícola 650 $aFertilidade do Solo 650 $aIrrigação 650 $aPedologia 653 $aRecursos hídricos
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Embrapa Unidades Centrais (AI-SEDE) |
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Registro Completo
Biblioteca(s): |
Embrapa Café. |
Data corrente: |
25/01/2022 |
Data da última atualização: |
11/04/2022 |
Tipo da produção científica: |
Artigo em Periódico Indexado |
Circulação/Nível: |
B - 1 |
Autoria: |
CINTRA, L. A.; SOUZA, T. B. de; PARTEKA, L. M.; BARRETO, L. M.; PEREIRA, L. F. P.; GAETA, M. L.; GUYOT, R.; VANZELA, A. L. L. |
Afiliação: |
LEONARDO ADABO CINTRA, UNIVERSIDADE ESTADUAL DE LONDRINA; THAÍSSA BOLDIERI DE SOUZA, UNIVERSIDADE ESTADUAL DE LONDRINA; LETÍCIA MARIA PARTEKA, UNIVERSIDADE ESTADUAL DE LONDRINA; LUCAS MESQUITA BARRETO, UNIVERSIDADE ESTADUAL DE LONDRINA; LUIZ FILIPE PROTASIO PEREIRA, CNPCa; MARCOS LETAIF GAETA, UNIVERSIDADE ESTADUAL DE LONDRINA; ROMAIN GUYOT, CIRAD; ANDRÉ LUÍS LAFORGA VANZELA, UNIVERSIDADE ESTADUAL DE LONDRINA. |
Título: |
An 82 bp tandem repeat family typical of 3' non-coding end of Gypsy/TAT LTR retrotransposons is conserved in Coffea spp. pericentromeres. |
Ano de publicação: |
2021 |
Fonte/Imprenta: |
Genome, v.65, n. 3, p. 137-181, 2021. |
DOI: |
https://doi.org/10.1139/gen-2021-0045 |
Idioma: |
Inglês |
Notas: |
Date of Electronic Publication: 2021 Nov 02. |
Conteúdo: |
Coffea spp. chromosomes are very small and accumulate a variety of repetitive DNA families around the centromeres. However, the proximal regions of Coffea chromosomes remain poorly understood, especially regarding the nature and organisation of the sequences. Taking advantage of the genome sequences of C. arabica (2n = 44), C. canephora, and C. eugenioides (C. arabica progenitors with 2n = 22) and good coverage genome sequencing of dozens of other wild Coffea spp., repetitive DNA sequences were identified, and the genomes were compared to decipher particularities of pericentromeric structures. The searches revealed a short tandem repeat (82 bp length) typical of Gypsy/TAT LTR retrotransposons, named Coffea_sat11. This repeat organises clusters with fragments of other transposable elements, comprising regions of non-coding RNA production. Cytogenomic analyses showed that Coffea_sat11 extends from the pericentromeres towards the middle of the chromosomal arms. This arrangement was observed in the allotetraploid C. arabica chromosomes, as well as in its progenitors. This study improves our understanding of the role of the Gypsy/TAT LTR retrotransposon lineage in the organisation of Coffea pericentromeres, as well as the conservation of Coffea_sat11 within the genus. The relationships between fragments of other transposable elements and the functional aspects of these sequences on the pericentromere chromatin were also evaluated. Highlights: A scattered short tandem repeat, typical of Gypsy/TAT LTR retrotransposons, associated with several fragments of other transposable elements, accumulates in the pericentromeres of Coffea chromosomes. This arrangement is preserved in all clades of the genus and appears to have a strong regulatory role in the organisation of chromatin around centromeres. MenosCoffea spp. chromosomes are very small and accumulate a variety of repetitive DNA families around the centromeres. However, the proximal regions of Coffea chromosomes remain poorly understood, especially regarding the nature and organisation of the sequences. Taking advantage of the genome sequences of C. arabica (2n = 44), C. canephora, and C. eugenioides (C. arabica progenitors with 2n = 22) and good coverage genome sequencing of dozens of other wild Coffea spp., repetitive DNA sequences were identified, and the genomes were compared to decipher particularities of pericentromeric structures. The searches revealed a short tandem repeat (82 bp length) typical of Gypsy/TAT LTR retrotransposons, named Coffea_sat11. This repeat organises clusters with fragments of other transposable elements, comprising regions of non-coding RNA production. Cytogenomic analyses showed that Coffea_sat11 extends from the pericentromeres towards the middle of the chromosomal arms. This arrangement was observed in the allotetraploid C. arabica chromosomes, as well as in its progenitors. This study improves our understanding of the role of the Gypsy/TAT LTR retrotransposon lineage in the organisation of Coffea pericentromeres, as well as the conservation of Coffea_sat11 within the genus. The relationships between fragments of other transposable elements and the functional aspects of these sequences on the pericentromere chromatin were also evaluated. Highlights: A scattered short tandem repeat, typi... Mostrar Tudo |
Thesaurus NAL: |
Chromosomes; Coffea; DNA probes; Genome. |
Categoria do assunto: |
-- |
Marc: |
LEADER 02675naa a2200277 a 4500 001 2139296 005 2022-04-11 008 2021 bl uuuu u00u1 u #d 024 7 $ahttps://doi.org/10.1139/gen-2021-0045$2DOI 100 1 $aCINTRA, L. A. 245 $aAn 82 bp tandem repeat family typical of 3' non-coding end of Gypsy/TAT LTR retrotransposons is conserved in Coffea spp. pericentromeres.$h[electronic resource] 260 $c2021 500 $aDate of Electronic Publication: 2021 Nov 02. 520 $aCoffea spp. chromosomes are very small and accumulate a variety of repetitive DNA families around the centromeres. However, the proximal regions of Coffea chromosomes remain poorly understood, especially regarding the nature and organisation of the sequences. Taking advantage of the genome sequences of C. arabica (2n = 44), C. canephora, and C. eugenioides (C. arabica progenitors with 2n = 22) and good coverage genome sequencing of dozens of other wild Coffea spp., repetitive DNA sequences were identified, and the genomes were compared to decipher particularities of pericentromeric structures. The searches revealed a short tandem repeat (82 bp length) typical of Gypsy/TAT LTR retrotransposons, named Coffea_sat11. This repeat organises clusters with fragments of other transposable elements, comprising regions of non-coding RNA production. Cytogenomic analyses showed that Coffea_sat11 extends from the pericentromeres towards the middle of the chromosomal arms. This arrangement was observed in the allotetraploid C. arabica chromosomes, as well as in its progenitors. This study improves our understanding of the role of the Gypsy/TAT LTR retrotransposon lineage in the organisation of Coffea pericentromeres, as well as the conservation of Coffea_sat11 within the genus. The relationships between fragments of other transposable elements and the functional aspects of these sequences on the pericentromere chromatin were also evaluated. Highlights: A scattered short tandem repeat, typical of Gypsy/TAT LTR retrotransposons, associated with several fragments of other transposable elements, accumulates in the pericentromeres of Coffea chromosomes. This arrangement is preserved in all clades of the genus and appears to have a strong regulatory role in the organisation of chromatin around centromeres. 650 $aChromosomes 650 $aCoffea 650 $aDNA probes 650 $aGenome 700 1 $aSOUZA, T. B. de 700 1 $aPARTEKA, L. M. 700 1 $aBARRETO, L. M. 700 1 $aPEREIRA, L. F. P. 700 1 $aGAETA, M. L. 700 1 $aGUYOT, R. 700 1 $aVANZELA, A. L. L. 773 $tGenome$gv.65, n. 3, p. 137-181, 2021.
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