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Registro Completo |
Biblioteca(s): |
Embrapa Mandioca e Fruticultura. |
Data corrente: |
14/11/2022 |
Data da última atualização: |
14/11/2022 |
Tipo da produção científica: |
Artigo em Periódico Indexado |
Autoria: |
RAMOS-GONZÁLEZ, P. L.; CHABI-JESUS, C.; TASSI, A. D.; CALEGARIO, R. F.; HARAKAVA, R.; NOME, C F.; KITAJIMA, E. W.; ASTUA, J. de F. |
Afiliação: |
PEDRO L. RAMOS-GONZÁLEZ, Instituto Biológico de São Paulo; CAMILA CHABI-JESUS, Instituto Biológico de São Paulo; ALINE D. TASSI, Instituto Biológico de São Paulo; RENATA FAIER CALEGARIO, Universidade Federal do Paraná; RICARDO HARAKAVA, Instituto Biológico de São Paulo; CLAUDIA F. NOME, Instituto Nacional de Tecnología Agropecuaria; ELLIOT W. KITAJIMA, Escola Superior de Agricultura Luiz de Queiroz; JULIANA DE FREITAS ASTUA, CNPMF. |
Título: |
A Novel Lineage of Cile-Like Viruses Discloses the Phylogenetic Continuum Across the Family Kitaviridae. |
Ano de publicação: |
2022 |
Fonte/Imprenta: |
Frontiers in Microbiology, v.28, n.13, 836076, March 2022. |
DOI: |
https://doi.org/10.3389/fmicb.2022.836076 |
Idioma: |
Francês |
Conteúdo: |
An increasing number of plant species have been recognized or considered likely reservoirs of viruses transmitted by Brevipalpus mites. A tiny fraction of these viruses, primarily those causing severe economic burden to prominent crops, have been fully characterized. In this study, based on high-throughput sequencing, transmission electron microscopy analyses of virions in plant-infected tissues, viral transmission experiments, and the morphoanatomical identification of the involved Brevipalpus mites, we describe molecular and biological features of viruses representing three new tentative species of the family Kitaviridae. The genomes of Solanum violifolium ringspot virus (SvRSV, previously partially characterized), Ligustrum chlorotic spot virus (LigCSV), and Ligustrum leprosis virus (LigLV) have five open reading frames (ORFs) > 500 nts, two distributed in RNA1 and three in RNA2. RNA1 of these three viruses display the same genomic organization found in RNA1 of typical cileviruses, while their RNA2 are shorter, possessing only orthologs of genes p61, p32, and p24. LigCSV and LigLV are more closely related to each other than to SvRSV, but the identities between their genomic RNAs were lower than 70%. In gene-by-gene comparisons, ORFs from LigCSV and LigLV had the highest sequence identity values (nt sequences: 70?76% and deduced amino acid sequences: 74?83%). The next higher identity values were with ORFs from typical cileviruses, with values below 66%. Virions of LigLV (? 40 nm × 55 nm) and LigCSV (? 54 nm × 66 nm) appear almost spherical, contrasting with the bacilliform shape of SvRSV virions (? 47 nm × 101 nm). Mites collected from the virus-infected plants were identified as Brevipalpus papayensis, B. tucuman, and B. obovatus. Viruliferous B. papayensis mites successfully transmitted LigCSV to Arabidopsis thaliana. SvRSV, LigCSV, and LigLV seem to represent novel sub-lineages of kitaviruses that descent on parallel evolutionary branches from a common ancestor shared with the tentative cile-like virus hibiscus yellow blotch virus and typical cileviruses. Biological and molecular data, notably, the phylogenetic reconstruction based on the RdRp proteins in which strong support for monophyly of the family Kitaviridae is observed, mark an advance in the understanding of kitavirids. MenosAn increasing number of plant species have been recognized or considered likely reservoirs of viruses transmitted by Brevipalpus mites. A tiny fraction of these viruses, primarily those causing severe economic burden to prominent crops, have been fully characterized. In this study, based on high-throughput sequencing, transmission electron microscopy analyses of virions in plant-infected tissues, viral transmission experiments, and the morphoanatomical identification of the involved Brevipalpus mites, we describe molecular and biological features of viruses representing three new tentative species of the family Kitaviridae. The genomes of Solanum violifolium ringspot virus (SvRSV, previously partially characterized), Ligustrum chlorotic spot virus (LigCSV), and Ligustrum leprosis virus (LigLV) have five open reading frames (ORFs) > 500 nts, two distributed in RNA1 and three in RNA2. RNA1 of these three viruses display the same genomic organization found in RNA1 of typical cileviruses, while their RNA2 are shorter, possessing only orthologs of genes p61, p32, and p24. LigCSV and LigLV are more closely related to each other than to SvRSV, but the identities between their genomic RNAs were lower than 70%. In gene-by-gene comparisons, ORFs from LigCSV and LigLV had the highest sequence identity values (nt sequences: 70?76% and deduced amino acid sequences: 74?83%). The next higher identity values were with ORFs from typical cileviruses, with values below 66%. Virions of LigLV (?... Mostrar Tudo |
Thesagro: |
Planta Ornamental; Vírus. |
Thesaurus Nal: |
Brevipalpus; Ornamental plants; Virion. |
Categoria do assunto: |
-- |
URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/doc/1148258/1/fmicb-13-836076.pdf
|
Marc: |
LEADER 03166naa a2200277 a 4500 001 2148258 005 2022-11-14 008 2022 bl uuuu u00u1 u #d 024 7 $ahttps://doi.org/10.3389/fmicb.2022.836076$2DOI 100 1 $aRAMOS-GONZÁLEZ, P. L. 245 $aA Novel Lineage of Cile-Like Viruses Discloses the Phylogenetic Continuum Across the Family Kitaviridae.$h[electronic resource] 260 $c2022 520 $aAn increasing number of plant species have been recognized or considered likely reservoirs of viruses transmitted by Brevipalpus mites. A tiny fraction of these viruses, primarily those causing severe economic burden to prominent crops, have been fully characterized. In this study, based on high-throughput sequencing, transmission electron microscopy analyses of virions in plant-infected tissues, viral transmission experiments, and the morphoanatomical identification of the involved Brevipalpus mites, we describe molecular and biological features of viruses representing three new tentative species of the family Kitaviridae. The genomes of Solanum violifolium ringspot virus (SvRSV, previously partially characterized), Ligustrum chlorotic spot virus (LigCSV), and Ligustrum leprosis virus (LigLV) have five open reading frames (ORFs) > 500 nts, two distributed in RNA1 and three in RNA2. RNA1 of these three viruses display the same genomic organization found in RNA1 of typical cileviruses, while their RNA2 are shorter, possessing only orthologs of genes p61, p32, and p24. LigCSV and LigLV are more closely related to each other than to SvRSV, but the identities between their genomic RNAs were lower than 70%. In gene-by-gene comparisons, ORFs from LigCSV and LigLV had the highest sequence identity values (nt sequences: 70?76% and deduced amino acid sequences: 74?83%). The next higher identity values were with ORFs from typical cileviruses, with values below 66%. Virions of LigLV (? 40 nm × 55 nm) and LigCSV (? 54 nm × 66 nm) appear almost spherical, contrasting with the bacilliform shape of SvRSV virions (? 47 nm × 101 nm). Mites collected from the virus-infected plants were identified as Brevipalpus papayensis, B. tucuman, and B. obovatus. Viruliferous B. papayensis mites successfully transmitted LigCSV to Arabidopsis thaliana. SvRSV, LigCSV, and LigLV seem to represent novel sub-lineages of kitaviruses that descent on parallel evolutionary branches from a common ancestor shared with the tentative cile-like virus hibiscus yellow blotch virus and typical cileviruses. Biological and molecular data, notably, the phylogenetic reconstruction based on the RdRp proteins in which strong support for monophyly of the family Kitaviridae is observed, mark an advance in the understanding of kitavirids. 650 $aBrevipalpus 650 $aOrnamental plants 650 $aVirion 650 $aPlanta Ornamental 650 $aVírus 700 1 $aCHABI-JESUS, C. 700 1 $aTASSI, A. D. 700 1 $aCALEGARIO, R. F. 700 1 $aHARAKAVA, R. 700 1 $aNOME, C F. 700 1 $aKITAJIMA, E. W. 700 1 $aASTUA, J. de F. 773 $tFrontiers in Microbiology$gv.28, n.13, 836076, March 2022.
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Embrapa Mandioca e Fruticultura (CNPMF) |
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Registro Completo
Biblioteca(s): |
Embrapa Milho e Sorgo. |
Data corrente: |
20/04/2020 |
Data da última atualização: |
20/04/2020 |
Tipo da produção científica: |
Artigo em Periódico Indexado |
Circulação/Nível: |
B - 1 |
Autoria: |
WIJAYAWARDENE, N. N.; HYDE, K. D.; AL-ANI, L. K. T.; TEDERSOO, L.; HAELEWATERS, D.; RAJESHKUMAR, K. C.; ZHAO, R. L; APTROOT, A.; LEONTYEV, D. V.; SAXENA, R. K.; TOKAREV, Y. S.; DAI, D. Q.; LETCHER, P. M.; STEPHENSON, S. L.; ERTZ, D.; LUMBSCH, H. T.; KUKWA, M.; ISSI, I. V.; MADRID, H.; PHILLIPS, A. J. L.; SELBMANN, L.; PFLIEGLER, W. P.; HORVÁTH, E.; BENSCH, K.; KIRK, P. M.; KOLARÍKOVÁ, K.; RAJA, H. A.; RADEK, R.; PAPP, V.; DIMA, V.; MA, J.; MALOSSO, E.; TAKAMATSU, S.; RAMBOLD, G.; GANNIBAL, P. B.; TRIEBEL, D.; GAUTAM, A. K.; AVASTHI, S.; SUETRONG, S.; TIMDAL, E.; FRYAR, S. C.; DELGADO, G.; RÉBLOVÁ, M.; DOILOM, M.; DOLATABADI, S.; PAWLOWSKA, J. Z.; HUMBER, R. A.; KODSUEB, R.; SÁNCHEZ-CASTRO, I.; GOTO, B. T.; SILVA, D. K. A.; SOUZA, F. A. de; OEHL, F.; SILVA, G. A. da; BLASZKOWSKI, J.; JOBIM, K.; MAIA, L. C.; BARBOSA, F. R.; FIUZA, P. O.; DIVAKAR, P. K.; SHENOY, B. D.; CASTAÑEDA-RUIZ, R. F.; SOMRITHIPOL, S.; LATEEF, A. A.; KARUNARATHNA, S. C.; TIBPROMMA, S.; MORTIMER, P. E.; WANASINGHE, D. N.; PHOOKAMSAK, R.; XU, J.; WANG, Y.; TIAN, F.; ALVARADO, P.; LI, D. W.; KUSAN, I.; MATOCEC, N.; MESIC, A.; TKALCEC, Z.; MAHARACHCHIKUMBURA, S. S. N.; PAPIZADEH, M.; HEREDIA, G.; WARTCHOW, F.; BAKHSHI, M.; BOEHM, E.; YOUSSEF, N.; HUSTAD, V. P.; LAWREY, J. D.; SANTIAGO, A. L. C. M. A.; BEZERRA, J. D. P.; SOUZA-MOTTA, C. M.; FIRMINO, A. L.; TIAN, Q.; HOUBRAKEN, J.; HONGSANAN, S.; TANAKA, K.; DISSANAYAKE, A. J.; MONTEIRO, J. S.; GROSSART, H. P.; SUIJA, A.; WEERAKOON, G.; ETAYO, J.; TSURYKAU, A.; VÁZQUEZ, V.; MUNGAI, P.; DAMM, U.; LI, Q. R.; ZHANG, H.; BOONMEE, S.; LU, Y. Z.; BECERRA, A. G.; KENDRICK, B.; BREARLEY, F. Q.; MOTIEJUNAITE, J.; SHARMA, B.; KHARE, R.; GAIKWAD, S.; WIJESUNDARA, D. S. A.; TANG, L. Z.; HE, M. Q.; FLAKUS, A.; RODRIGUEZ-FLAKUS, P.; ZHURBENKO, M. P.; MCKENZIE, E. H. C.; STADLER, M.; BHAT, D. J.; LIU, J. K.; RAZA, M.; JEEWON, R.; NASSONOVA, E. S.; PRIETO, M.; JAYALAL, R. G. U.; ERDOGDU, M.; YURKOV, A.; SCHNITTLER, M.; SHCHEPIN, O. N.; NOVOZHILOV, Y. K.; SILVA-FILHO, A. G. S.; GENTEKAKI, E.; LIU, P.; CAVENDER, J. C.; KANG, Y.; MOHAMMAD, S.; ZHANG, L. F.; XU, R. F.; LI, Y. M.; DAYARATHNE, M. C.; EKANAYAKA, A. H.; WEN, T. C.; DENG, C. Y.; PEREIRA, O. L.; NAVATHE, S.; HAWKSWORTH, D. L.; FAN, X. L.; DISSANAYAKE, L. S.; KUHNERT, E.; GROSSART, H. P.; THINES, M. |
Afiliação: |
Qujing Normal University; Mae Fah Luang University; University of Baghdad; University of Tartu; University of South Bohemia; National Fungal Culture Collection of India -NFCCI; State Key Laboratory of Mycology; Universidade Federal de Mato Grosso do Sul; Skovoroda Kharkiv National Pedagogical University; University Road; All-Russian Institute of Plant Protection; Qujing Normal University; The University of Alabama; University of Arkansas; Botanic Garden Meise; The Field Museum; University of Gda?sk; All-Russian Institute of Plant Protection; Universidad Mayor; Universidade de Lisboa; University of Tuscia; University of Debrecen; University of Debrecen; Westerdijk Fungal Biodiversity Institute; Royal Botanic Gardens; Czech Academy of Sciences; University of North Carolina at Greensboro; Freie Universität Berlin; Szent István University; Eötvös Loránd University; Jiangxi Agricultural University; Universidade Federal de Pernambuco; Mie University; Universität of Bayreuth; All-Russian Institute of Plant Protection; Staatliche Naturwissenschaftliche Sammlungen Bayerns; Abhilashi University; Jiwaji University; National Science and Technology Development Agency -NSTDA; University of Oslo; Flinders University; EMLab P&K Houston; Academy of Sciences; Chiang Mai University; Sabzevar University of New Technology; University of Warsaw; USDA-ARS Emerging Pests and Pathogens Research; Pibulsongkram Rajabhat University; Universidad de Granada; Universidade Federal do Rio Grande do Norte; Universidade Federal da Paraíba; FRANCISCO ADRIANO DE SOUZA, CNPMS; Agroscope, Competence Div Plants & Plant Prod.; Universidade Federal de Pernambuco; West Pomeranian University of Technology; Universidade Federal do Rio Grande do Norte; Universidade Federal de Pernambuco; Universidade Federal de Mato Grosso; Universidade Federal do Rio Grande do Norte; Universidad Complutense de Madrid; CSIR-National Institute of Oceanography Regional Centre; Instituto de Investigaciones Fundamentales en AgriculturaTropical; BIOTEC, National Science and Technology Development Agency - NSTDA; University of Ilorin; Kunming Institute of Botany; Kunming Institute of Botany; Kunming Institute of Botany; Kunming Institute of Botany; Mae Fah Luang University; Kunming Institute of Botany; Guizhou University; Guizhou University; ALVALAB; Valley Laboratory; Ru?er Boškovi? Institute; Ru?er Boškovi? Institute; Ru?er Boškovi? Institute; Ru?er Boškovi? Institute; University of Electronic Science and Technology of China; Pasteur Institute of Iran; Instituto de Ecolog? 'a A. C.; Universidade Federal da Paraíba; Iranian Research Institute of Plant Protection; Oklahoma State University; Northwest Missouri State University; George Mason University; Universidade Federal de Pernambuco; Universidade Federal de Pernambuco; Universidade Federal de Pernambuco; Universidade Federal de Uberlândia; Mae Fah Luang University; Westerdijk Fungal Biodiversity Institute; Shenzhen University; Hirosaki University; University of Electronic Science and Technology of China; Museu Paraense Emílio Goeldi; Leibnitz Institute of Freshwater Ecology and Inland Fisheries - IGB; University of Tartu; The Natural History Museum; IES Zizur; Skorina Gomel State University; University of Málaga; Kenya Wildlife Service; Senckenberg Museum of Natural History Görlitz; Guizhou Medical University; Kunming University of Science and Technology; Mae Fah Luang University; Guizhou University; Universidad Nacional de Córdoba; Manchester Metropolitan University; Nature Research Centre; Agharkar Research Institute; Agharkar Research Institute; Agharkar Research Institute; National Institute of Fundamental Studies; Qujing Normal University; Institute of Microbiology Chinese Academy of Sciences; Szafer Institute of Botany; Szafer Institute of Botany; Russian Academy of Sciences; Manaaki Whenua-Landcare Research; Helmholtz-Zentrum für Infektionsforschung GmbH; University of Electronic Science and Technology of China; Institute of Microbiology Chinese Academy of Sciences; University of Mauritius; Russian Academy of Sciences; Universidad Rey Juan Carlos; University of Sri Lanka; K?r?ehir Ahi Evran University; Leibniz Institute; Ernst Moritz Arndt University Greifswald; Russian Academy of Sciences; Russian Academy of Sciences; Universidade Federal do Rio Grande do Norte; Mae Fah Luang University; Jilin Agricultural University; Ohio University; Guizhou Medical University; Iranian Research Organization for Science and Technology -IROST; Qujing Normal University; Qujing Normal University; Qujing Normal University; Guizhou University; Mae Fah Luang University; Guizhou University; Guizhou Academy of Science; Universidade Federal de Viçosa; Agharkar Research Institute; Jilin Agricultural University; Beijing Forestry University; Guizhou University; Leibniz University; Leibnitz Institute of Freshwater Ecology and Inland Fisheries -IGB; Goethe University. |
Título: |
Outline of Fungi and fungus-like taxa. |
Ano de publicação: |
2020 |
Fonte/Imprenta: |
Mycosphere, v. 11, n. 1, p. 1060-1456, 2020. |
DOI: |
10.5943/mycosphere/11/1/8 |
Idioma: |
Inglês |
Conteúdo: |
This article provides an outline of the classification of the kingdom Fungi (including fossil fungi. i.e. dispersed spores, mycelia, sporophores, mycorrhizas). We treat 19 phyla of fungi. These are Aphelidiomycota, Ascomycota, Basidiobolomycota, Basidiomycota, Blastocladiomycota, Calcarisporiellomycota, Caulochytriomycota, Chytridiomycota, Entomophthoromycota, Entorrhizomycota, Glomeromycota, Kickxellomycota, Monoblepharomycota, Mortierellomycota, Mucoromycota, Neocallimastigomycota, Olpidiomycota, Rozellomycota and Zoopagomycota. The placement of all fungal genera is provided at the class-, order- and family-level. The described number of species per genus is also given. Notes are provided of taxa for which recent changes or disagreements have been presented. Fungus-like taxa that were traditionally treated as fungi are also incorporated in this outline (i.e. Eumycetozoa, Dictyosteliomycetes, Ceratiomyxomycetes and Myxomycetes). Four new taxa are introduced: Amblyosporida ord. nov. Neopereziida ord. nov. and Ovavesiculida ord. nov. in Rozellomycota, and Protosporangiaceae fam. nov. in Dictyosteliomycetes. Two different classifications (in outline section and in discussion) are provided for Glomeromycota and Leotiomycetes based on recent studies. The phylogenetic reconstruction of a four-gene dataset (18S and 28S rRNA, RPB1, RPB2) of 433 taxa is presented, including all currently described orders of fungi. |
Thesagro: |
Fungo. |
Thesaurus NAL: |
Amblyosporidae; Ascomycota; Basidiomycota; Microsporidia. |
Categoria do assunto: |
S Ciências Biológicas |
URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/item/212407/1/Outline-fungi.pdf
|
Marc: |
LEADER 06573naa a2202065 a 4500 001 2121744 005 2020-04-20 008 2020 bl uuuu u00u1 u #d 024 7 $a10.5943/mycosphere/11/1/8$2DOI 100 1 $aWIJAYAWARDENE, N. N. 245 $aOutline of Fungi and fungus-like taxa.$h[electronic resource] 260 $c2020 520 $aThis article provides an outline of the classification of the kingdom Fungi (including fossil fungi. i.e. dispersed spores, mycelia, sporophores, mycorrhizas). We treat 19 phyla of fungi. These are Aphelidiomycota, Ascomycota, Basidiobolomycota, Basidiomycota, Blastocladiomycota, Calcarisporiellomycota, Caulochytriomycota, Chytridiomycota, Entomophthoromycota, Entorrhizomycota, Glomeromycota, Kickxellomycota, Monoblepharomycota, Mortierellomycota, Mucoromycota, Neocallimastigomycota, Olpidiomycota, Rozellomycota and Zoopagomycota. The placement of all fungal genera is provided at the class-, order- and family-level. The described number of species per genus is also given. Notes are provided of taxa for which recent changes or disagreements have been presented. Fungus-like taxa that were traditionally treated as fungi are also incorporated in this outline (i.e. Eumycetozoa, Dictyosteliomycetes, Ceratiomyxomycetes and Myxomycetes). Four new taxa are introduced: Amblyosporida ord. nov. Neopereziida ord. nov. and Ovavesiculida ord. nov. in Rozellomycota, and Protosporangiaceae fam. nov. in Dictyosteliomycetes. Two different classifications (in outline section and in discussion) are provided for Glomeromycota and Leotiomycetes based on recent studies. The phylogenetic reconstruction of a four-gene dataset (18S and 28S rRNA, RPB1, RPB2) of 433 taxa is presented, including all currently described orders of fungi. 650 $aAmblyosporidae 650 $aAscomycota 650 $aBasidiomycota 650 $aMicrosporidia 650 $aFungo 700 1 $aHYDE, K. D. 700 1 $aAL-ANI, L. K. T. 700 1 $aTEDERSOO, L. 700 1 $aHAELEWATERS, D. 700 1 $aRAJESHKUMAR, K. C. 700 1 $aZHAO, R. 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P. 700 1 $aSUIJA, A. 700 1 $aWEERAKOON, G. 700 1 $aETAYO, J. 700 1 $aTSURYKAU, A. 700 1 $aVÁZQUEZ, V. 700 1 $aMUNGAI, P. 700 1 $aDAMM, U. 700 1 $aLI, Q. R. 700 1 $aZHANG, H. 700 1 $aBOONMEE, S. 700 1 $aLU, Y. Z. 700 1 $aBECERRA, A. G. 700 1 $aKENDRICK, B. 700 1 $aBREARLEY, F. Q. 700 1 $aMOTIEJUNAITE, J. 700 1 $aSHARMA, B. 700 1 $aKHARE, R. 700 1 $aGAIKWAD, S. 700 1 $aWIJESUNDARA, D. S. A. 700 1 $aTANG, L. Z. 700 1 $aHE, M. Q. 700 1 $aFLAKUS, A. 700 1 $aRODRIGUEZ-FLAKUS, P. 700 1 $aZHURBENKO, M. P. 700 1 $aMCKENZIE, E. H. C. 700 1 $aSTADLER, M. 700 1 $aBHAT, D. J. 700 1 $aLIU, J. K. 700 1 $aRAZA, M. 700 1 $aJEEWON, R. 700 1 $aNASSONOVA, E. S. 700 1 $aPRIETO, M. 700 1 $aJAYALAL, R. G. U. 700 1 $aERDOGDU, M. 700 1 $aYURKOV, A. 700 1 $aSCHNITTLER, M. 700 1 $aSHCHEPIN, O. N. 700 1 $aNOVOZHILOV, Y. K. 700 1 $aSILVA-FILHO, A. G. S. 700 1 $aGENTEKAKI, E. 700 1 $aLIU, P. 700 1 $aCAVENDER, J. C. 700 1 $aKANG, Y. 700 1 $aMOHAMMAD, S. 700 1 $aZHANG, L. F. 700 1 $aXU, R. F. 700 1 $aLI, Y. M. 700 1 $aDAYARATHNE, M. C. 700 1 $aEKANAYAKA, A. H. 700 1 $aWEN, T. C. 700 1 $aDENG, C. Y. 700 1 $aPEREIRA, O. L. 700 1 $aNAVATHE, S. 700 1 $aHAWKSWORTH, D. L. 700 1 $aFAN, X. L. 700 1 $aDISSANAYAKE, L. S. 700 1 $aKUHNERT, E. 700 1 $aGROSSART, H. P. 700 1 $aTHINES, M. 773 $tMycosphere$gv. 11, n. 1, p. 1060-1456, 2020.
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