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Registro Completo |
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Biblioteca(s): |
Embrapa Gado de Leite. |
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Data corrente: |
03/06/2023 |
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Data da última atualização: |
07/06/2023 |
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Tipo da produção científica: |
Artigo em Periódico Indexado |
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Autoria: |
BRAGA, L. G.; CHUD, T. C. S.; WATANABE, R. N.; SAVEGNAGO, R. P.; SENA, T. M.; CARMO, A. S. do; MACHADO, M. A.; PANETTO, J. C. do C.; SILVA, M. V. G. B.; MUNARI, D. P. |
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Afiliação: |
LARISSA G. BRAGA, Universidade Estadual Paulista; TATIANE C. S. CHUD, University of Guelph; RAFAEL N. WATANABE, Universidade Estadual Paulista; RODRIGO P. SAVEGNAGO, Michigan State University; THOMAZ M. SENA, Universidade Estadual Paulista; ADRIANA S. DO CARMO, Universidade Federal de Goiás; MARCO ANTONIO MACHADO, CNPGL; JOAO CLAUDIO DO CARMO PANETTO, CNPGL; MARCOS VINICIUS GUALBERTO B SILVA, CNPGL; DANISIO P. MUNARI, Universidade Estadual Paulista. |
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Título: |
Identification of copy number variations in the genome of Dairy Gir cattle. |
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Ano de publicação: |
2023 |
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Fonte/Imprenta: |
PLoS ONE, v. 18, n. 4, e0284085, 2023. |
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DOI: |
https://doi.org/10.1371/journal.pone.0284085 |
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Idioma: |
Inglês |
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Conteúdo: |
Studying structural variants that can control complex traits is relevant for dairy cattle production, especially for animals that are tolerant to breeding conditions in the tropics, such as the Dairy Gir cattle. This study identified and characterized high confidence copy number variation regions (CNVR) in the Gir breed genome. A total of 38 animals were whole-genome sequenced, and 566 individuals were genotyped with a high-density SNP panel, among which 36 animals had both sequencing and SNP genotyping data available. Two sets of high confidence CNVR were established: one based on common CNV identified in the studied population (CNVR_POP), and another with CNV identified in sires with both sequence and SNP genotyping data available (CNVR_ANI). We found 10 CNVR_POP and 45 CNVR_ANI, which covered 1.05 Mb and 4.4 Mb of the bovine genome, respectively. Merging these CNV sets for functional analysis resulted in 48 unique high confidence CNVR. The overlapping genes were previously related to embryonic mortality, environmental adaptation, evolutionary process, immune response, longevity, mammary gland, resistance to gastrointestinal parasites, and stimuli recognition, among others. Our results contribute to a better understanding of the Gir breed genome. Moreover, the CNV identified in this study can potentially affect genes related to complex traits, such as production, health, and reproduction. |
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Thesagro: |
Gado Leiteiro; Genoma. |
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Categoria do assunto: |
-- |
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URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/doc/1154204/1/Identification-of-copy-number-variations-in-the-genome.pdf
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Marc: |
LEADER 02180naa a2200265 a 4500
001 2154204
005 2023-06-07
008 2023 bl uuuu u00u1 u #d
024 7 $ahttps://doi.org/10.1371/journal.pone.0284085$2DOI
100 1 $aBRAGA, L. G.
245 $aIdentification of copy number variations in the genome of Dairy Gir cattle.$h[electronic resource]
260 $c2023
520 $aStudying structural variants that can control complex traits is relevant for dairy cattle production, especially for animals that are tolerant to breeding conditions in the tropics, such as the Dairy Gir cattle. This study identified and characterized high confidence copy number variation regions (CNVR) in the Gir breed genome. A total of 38 animals were whole-genome sequenced, and 566 individuals were genotyped with a high-density SNP panel, among which 36 animals had both sequencing and SNP genotyping data available. Two sets of high confidence CNVR were established: one based on common CNV identified in the studied population (CNVR_POP), and another with CNV identified in sires with both sequence and SNP genotyping data available (CNVR_ANI). We found 10 CNVR_POP and 45 CNVR_ANI, which covered 1.05 Mb and 4.4 Mb of the bovine genome, respectively. Merging these CNV sets for functional analysis resulted in 48 unique high confidence CNVR. The overlapping genes were previously related to embryonic mortality, environmental adaptation, evolutionary process, immune response, longevity, mammary gland, resistance to gastrointestinal parasites, and stimuli recognition, among others. Our results contribute to a better understanding of the Gir breed genome. Moreover, the CNV identified in this study can potentially affect genes related to complex traits, such as production, health, and reproduction.
650 $aGado Leiteiro
650 $aGenoma
700 1 $aCHUD, T. C. S.
700 1 $aWATANABE, R. N.
700 1 $aSAVEGNAGO, R. P.
700 1 $aSENA, T. M.
700 1 $aCARMO, A. S. do
700 1 $aMACHADO, M. A.
700 1 $aPANETTO, J. C. do C.
700 1 $aSILVA, M. V. G. B.
700 1 $aMUNARI, D. P.
773 $tPLoS ONE$gv. 18, n. 4, e0284085, 2023.
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Registro original: |
Embrapa Gado de Leite (CNPGL) |
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Biblioteca |
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Origem |
Tipo/Formato |
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Cutter |
Registro |
Volume |
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URL |
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Registro Completo
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Biblioteca(s): |
Embrapa Tabuleiros Costeiros. |
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Data corrente: |
07/01/2021 |
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Data da última atualização: |
13/01/2021 |
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Tipo da produção científica: |
Artigo em Periódico Indexado |
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Circulação/Nível: |
A - 2 |
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Autoria: |
MELO, P. L. A.; CHERUBIN, M. R.; GOMES, T. C. de A.; LISBOA, I. P.; SATIRO, L. S.; CERRI, C. E. P.; SIQUEIRA NETO, M. |
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Afiliação: |
PAIL L. A. MELO; MAURICIO R. CHERUBIN; TAMARA CLAUDIA DE ARAUJO GOMES, CPATC; IZAIAS P. LISBOA; LUCAS S. SATIRO; CARLOS E. P. CERRI; MARCOS SIQUEIRA NETO. |
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Título: |
Straw removal effects on sugarcane root system and stalk yield. |
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Ano de publicação: |
2020 |
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Fonte/Imprenta: |
Agronomy, v. 10, 1048, 2020. |
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DOI: |
10.3390/agronomy10071048 |
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Idioma: |
Inglês |
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Conteúdo: |
The sugarcane (Saccharum spp. L.) mechanical harvesting system leaves a large amount of straw mulch on the soil surface. The straw mulch may affect soil conditions, root regrowth, and sugarcane yield. Thus, this study assessed the response of sugarcane root system growth and stalk yield to different rates of straw removal. An experiment was conducted in a Rhodic Kandiudox with sand clay loam texture to test the impact of four rates of straw removal: no removal (18.9 Mg ha−1 of dry mass); moderate removal (8.7 Mg ha−1); high removal (4.2 Mg ha−1) and total removal on sugarcane root system and stalk yield. Higher concentrations of roots (60%) were found in the first 40 cm of soil. Moderate straw removal resulted in higher root mass (3.6 Mg ha−1 ) and stalk production (23 Mg ha−1 of dry mass). However, no straw removal reduced root mass by <40% (2099 kg ha−1) and reduced stalk yield by >20% (105 Mg ha−1). Through regression analysis, it was estimated that retaining between 8.5 and 13 Mg ha−1 of straw resulted in the highest root mass and stalk yield. Managing straw removal to retain a moderate amount enables producers to sustain suitable soil conditions for sugarcane root growth and stalk production while providing straw for industrial use. |
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Thesagro: |
Cana de Açúcar; Colheita; Colheita Mecânica; Palha; Sistema Radicular. |
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Thesaurus NAL: |
Mechanical harvesting; Straw mulches; Sugarcane. |
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Categoria do assunto: |
-- |
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URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/item/219975/1/2020StrawRemovalEffectsonSugarcaneRootSystemandStalkYieldMELOetal2020.pdf
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Marc: |
LEADER 02130naa a2200301 a 4500
001 2129065
005 2021-01-13
008 2020 bl uuuu u00u1 u #d
024 7 $a10.3390/agronomy10071048$2DOI
100 1 $aMELO, P. L. A.
245 $aStraw removal effects on sugarcane root system and stalk yield.$h[electronic resource]
260 $c2020
520 $aThe sugarcane (Saccharum spp. L.) mechanical harvesting system leaves a large amount of straw mulch on the soil surface. The straw mulch may affect soil conditions, root regrowth, and sugarcane yield. Thus, this study assessed the response of sugarcane root system growth and stalk yield to different rates of straw removal. An experiment was conducted in a Rhodic Kandiudox with sand clay loam texture to test the impact of four rates of straw removal: no removal (18.9 Mg ha−1 of dry mass); moderate removal (8.7 Mg ha−1); high removal (4.2 Mg ha−1) and total removal on sugarcane root system and stalk yield. Higher concentrations of roots (60%) were found in the first 40 cm of soil. Moderate straw removal resulted in higher root mass (3.6 Mg ha−1 ) and stalk production (23 Mg ha−1 of dry mass). However, no straw removal reduced root mass by <40% (2099 kg ha−1) and reduced stalk yield by >20% (105 Mg ha−1). Through regression analysis, it was estimated that retaining between 8.5 and 13 Mg ha−1 of straw resulted in the highest root mass and stalk yield. Managing straw removal to retain a moderate amount enables producers to sustain suitable soil conditions for sugarcane root growth and stalk production while providing straw for industrial use.
650 $aMechanical harvesting
650 $aStraw mulches
650 $aSugarcane
650 $aCana de Açúcar
650 $aColheita
650 $aColheita Mecânica
650 $aPalha
650 $aSistema Radicular
700 1 $aCHERUBIN, M. R.
700 1 $aGOMES, T. C. de A.
700 1 $aLISBOA, I. P.
700 1 $aSATIRO, L. S.
700 1 $aCERRI, C. E. P.
700 1 $aSIQUEIRA NETO, M.
773 $tAgronomy$gv. 10, 1048, 2020.
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Embrapa Tabuleiros Costeiros (CPATC) |
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