|
|
Registro Completo |
Biblioteca(s): |
Embrapa Agricultura Digital. |
Data corrente: |
26/02/2016 |
Data da última atualização: |
21/01/2020 |
Tipo da produção científica: |
Resumo em Anais de Congresso |
Autoria: |
LOBO, F. P.; CINTRA, L. C.; VARELA, E. S.; ALVES, A. L.; SILVA, N. M. A. da; IANELLA, P.; PAIVA, S. R.; CAETANO, A. R. |
Afiliação: |
FRANCISCO PEREIRA LOBO, CNPTIA; LEANDRO CARRIJO CINTRA, CNPTIA; EDUARDO SOUSA VARELA, CNPASA; ANDERSON LUIS ALVES, CNPASA; NAIARA MILAGRES AUGUSTO DA SILVA, CENARGEN; PATRICIA IANELLA, CENARGEN; SAMUEL REZENDE PAIVA, SRI; ALEXANDRE RODRIGUES CAETANO, CENARGEN. |
Título: |
Genome Sequencing and de novo assembly of the South American Tiger Catfish (Pseudoplatystoma punctifer). |
Ano de publicação: |
2016 |
Fonte/Imprenta: |
In: PLANT & ANIMAL GENOME CONFERENCE, 24., 2016, San Diego, CA. [Abstracts...]. San Diego: [s.n.], 2016. |
Páginas: |
Não paginado. |
Idioma: |
Inglês |
Notas: |
PAG 2016. Pôster P0481. |
Conteúdo: |
The South American Tiger Catfish (Pseudoplatystoma punctifer) is a freshwater fish species naturally found in the Amazon river basin with an important role in local community and commercial fishing. Recent efforts to domesticate and raise the species in aquaculture systems has led to >10-fold production increases in the last decade. Current production levels are >15,000mt/year. Recently stablished initiatives to structure genetic improvement programs for increasing productivity-associated traits could greatly benefit from using genomic tools for broodstock management and assisted genetic evaluations and breeding. Multiple shotgun libraries with two different insert sizes and multiple Nextera mate pair libraries with three different sizes were sequenced (2x160bps) with Illumina HiSeq2000 technology. A total of 124.8Gbp quality-filtered nucleotides were sequenced which amount to 85x mean genome coverage, considering previously published information (C-value = 1.12pg = 1.095Gbp). Initial sequence assembly was performed with SOAPdenovo and generated 686.171 scaffolds spanning 1.41 Gbp (N50 scaffold length: 908Kbp, L50 scaffold count: 420). Gene model prediction is underway with MAKER2 using as extrinsic evidence protein and EST data from phylogenetically related taxa. This represents the first report of a draft genome sequence for this species, which will be a valuable resource for basic biology studies, and marker detection/selection for use in genetic improvement and resource conservation activities. MenosThe South American Tiger Catfish (Pseudoplatystoma punctifer) is a freshwater fish species naturally found in the Amazon river basin with an important role in local community and commercial fishing. Recent efforts to domesticate and raise the species in aquaculture systems has led to >10-fold production increases in the last decade. Current production levels are >15,000mt/year. Recently stablished initiatives to structure genetic improvement programs for increasing productivity-associated traits could greatly benefit from using genomic tools for broodstock management and assisted genetic evaluations and breeding. Multiple shotgun libraries with two different insert sizes and multiple Nextera mate pair libraries with three different sizes were sequenced (2x160bps) with Illumina HiSeq2000 technology. A total of 124.8Gbp quality-filtered nucleotides were sequenced which amount to 85x mean genome coverage, considering previously published information (C-value = 1.12pg = 1.095Gbp). Initial sequence assembly was performed with SOAPdenovo and generated 686.171 scaffolds spanning 1.41 Gbp (N50 scaffold length: 908Kbp, L50 scaffold count: 420). Gene model prediction is underway with MAKER2 using as extrinsic evidence protein and EST data from phylogenetically related taxa. This represents the first report of a draft genome sequence for this species, which will be a valuable resource for basic biology studies, and marker detection/selection for use in genetic improvement and resource ... Mostrar Tudo |
Palavras-Chave: |
Bioinformática; Genômica; Sequenciamento de genoma. |
Thesaurus Nal: |
Bioinformatics; Genome assembly; Genomics; Sequence analysis. |
Categoria do assunto: |
X Pesquisa, Tecnologia e Engenharia |
URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/item/140246/1/PAG-p0481.pdf
|
Marc: |
LEADER 02463nam a2200301 a 4500 001 2038884 005 2020-01-21 008 2016 bl uuuu u00u1 u #d 100 1 $aLOBO, F. P. 245 $aGenome Sequencing and de novo assembly of the South American Tiger Catfish (Pseudoplatystoma punctifer).$h[electronic resource] 260 $aIn: PLANT & ANIMAL GENOME CONFERENCE, 24., 2016, San Diego, CA. [Abstracts...]. San Diego: [s.n.]$c2016 300 $aNão paginado. 500 $aPAG 2016. Pôster P0481. 520 $aThe South American Tiger Catfish (Pseudoplatystoma punctifer) is a freshwater fish species naturally found in the Amazon river basin with an important role in local community and commercial fishing. Recent efforts to domesticate and raise the species in aquaculture systems has led to >10-fold production increases in the last decade. Current production levels are >15,000mt/year. Recently stablished initiatives to structure genetic improvement programs for increasing productivity-associated traits could greatly benefit from using genomic tools for broodstock management and assisted genetic evaluations and breeding. Multiple shotgun libraries with two different insert sizes and multiple Nextera mate pair libraries with three different sizes were sequenced (2x160bps) with Illumina HiSeq2000 technology. A total of 124.8Gbp quality-filtered nucleotides were sequenced which amount to 85x mean genome coverage, considering previously published information (C-value = 1.12pg = 1.095Gbp). Initial sequence assembly was performed with SOAPdenovo and generated 686.171 scaffolds spanning 1.41 Gbp (N50 scaffold length: 908Kbp, L50 scaffold count: 420). Gene model prediction is underway with MAKER2 using as extrinsic evidence protein and EST data from phylogenetically related taxa. This represents the first report of a draft genome sequence for this species, which will be a valuable resource for basic biology studies, and marker detection/selection for use in genetic improvement and resource conservation activities. 650 $aBioinformatics 650 $aGenome assembly 650 $aGenomics 650 $aSequence analysis 653 $aBioinformática 653 $aGenômica 653 $aSequenciamento de genoma 700 1 $aCINTRA, L. C. 700 1 $aVARELA, E. S. 700 1 $aALVES, A. L. 700 1 $aSILVA, N. M. A. da 700 1 $aIANELLA, P. 700 1 $aPAIVA, S. R. 700 1 $aCAETANO, A. R.
Download
Esconder MarcMostrar Marc Completo |
Registro original: |
Embrapa Agricultura Digital (CNPTIA) |
|
Biblioteca |
ID |
Origem |
Tipo/Formato |
Classificação |
Cutter |
Registro |
Volume |
Status |
URL |
Voltar
|
|
| Acesso ao texto completo restrito à biblioteca da Embrapa Clima Temperado. Para informações adicionais entre em contato com cpact.biblioteca@embrapa.br. |
Registro Completo
Biblioteca(s): |
Embrapa Clima Temperado. |
Data corrente: |
11/12/2008 |
Data da última atualização: |
15/01/2009 |
Tipo da produção científica: |
Artigo em Anais de Congresso / Nota Técnica |
Autoria: |
GOMES, A. da S.; PETRINI, J. A.; SCIVITTARO, W. B.; FERREIRA, L. E. G.; KABKE, R.; CHIARELO, C.; SANTOS, L. O. dos; PIMENTA, R. P.; HANNEMANN, M. A.; OSSANES, L. da S. |
Título: |
Estratégias para o aumento da eficiência do uso da água pelo arroz: efeito de sistemas alternativos de irrigação. |
Ano de publicação: |
2008 |
Fonte/Imprenta: |
In: CONGRESSO NACIONAL DE IRRIGAÇÃO E DRENAGEM, 18., 2008, São Mateus. O equilíbrio do fluxo hídrico para uma agricultura irrigada sustentável. São Mateus: ABID, 2008. 1 CD-ROM. |
Idioma: |
Português |
Thesagro: |
Arroz. |
Categoria do assunto: |
-- |
Marc: |
LEADER 00820naa a2200229 a 4500 001 1746290 005 2009-01-15 008 2008 bl uuuu u00u1 u #d 100 1 $aGOMES, A. da S. 245 $aEstratégias para o aumento da eficiência do uso da água pelo arroz$befeito de sistemas alternativos de irrigação. 260 $c2008 650 $aArroz 700 1 $aPETRINI, J. A. 700 1 $aSCIVITTARO, W. B. 700 1 $aFERREIRA, L. E. G. 700 1 $aKABKE, R. 700 1 $aCHIARELO, C. 700 1 $aSANTOS, L. O. dos 700 1 $aPIMENTA, R. P. 700 1 $aHANNEMANN, M. A. 700 1 $aOSSANES, L. da S. 773 $tIn: CONGRESSO NACIONAL DE IRRIGAÇÃO E DRENAGEM, 18., 2008, São Mateus. O equilíbrio do fluxo hídrico para uma agricultura irrigada sustentável. São Mateus: ABID, 2008. 1 CD-ROM.
Download
Esconder MarcMostrar Marc Completo |
Registro original: |
Embrapa Clima Temperado (CPACT) |
|
Biblioteca |
ID |
Origem |
Tipo/Formato |
Classificação |
Cutter |
Registro |
Volume |
Status |
Fechar
|
Expressão de busca inválida. Verifique!!! |
|
|