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Registro Completo |
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Biblioteca(s): |
Embrapa Agricultura Digital. |
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Data corrente: |
29/05/2012 |
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Data da última atualização: |
22/05/2024 |
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Tipo da produção científica: |
Artigo em Periódico Indexado |
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Autoria: |
FARIA, L. C. B.; ROCHA, A. S. L.; KLEINSCHMIDT, J. H.; SILVA-FILHO, M. C.; BIM, E.; HERAI, R. H.; YAMAGISHI, M. E. B.; PALAZZO JÚNIOR, R. |
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Afiliação: |
LUZINETE C. B. FARIA, UNIVERSIDADE ESTADUAL DE CAMPINAS; ANDRÉA S. L. ROCHA, UNIVERSIDADE ESTADUAL DE CAMPINAS; JOÃO H. KLEINSCHMIDT, UNIVERSIDADE FEDERAL DO ABC; MÁRCIO C. SILVA-FILHO, UNIVERSIDADE DE SÃO PAULO; EDSON BIM, UNIVERSIDADE ESTADUAL DE CAMPINAS; ROBERTO H. HERAI, UNIVERSITY OF CALIFORNIA; MICHEL EDUARDO BELEZA YAMAGISHI, CNPTIA; REGINALDO PALAZZO JÚNIOR, UNIVERSIDADE ESTADUAL DE CAMPINAS. |
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Título: |
Is a genome a codeword of an error-correcting code? |
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Ano de publicação: |
2012 |
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Fonte/Imprenta: |
PLoS ONE, San Francisco, v. 7, n. 5, e105396, May 2012. |
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DOI: |
https://doi.org/10.1371/journal.pone.0036644 |
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Idioma: |
Inglês |
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Conteúdo: |
Since a genome is a discrete sequence, the elements of which belong to a set of four letters, the question as to whether or not there is an error-correcting code underlying DNA sequences is unavoidable. The most common approach to answering this question is to propose a methodology to verify the existence of such a code. However, none of the methodologies proposed so far, although quite clever, has achieved that goal. In a recent work, we showed that DNA sequences can be identified as codewords in a class of cyclic error-correcting codes known as Hamming codes. In this paper, we show that a complete intron-exon gene, and even a plasmid genome, can be identified as a Hamming code codeword as well. Although this does not constitute a definitive proof that there is an error-correcting code underlying DNA sequences, it is the first evidence in this direction. |
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Palavras-Chave: |
Biology; Sequência de DNA. |
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Thesagro: |
Biologia. |
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Thesaurus Nal: |
Genome; Nucleotide sequences. |
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Categoria do assunto: |
-- |
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URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/item/60323/1/journal.pone.0036644.pdf
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Marc: |
LEADER 01659naa a2200277 a 4500
001 1925637
005 2024-05-22
008 2012 bl uuuu u00u1 u #d
024 7 $ahttps://doi.org/10.1371/journal.pone.0036644$2DOI
100 1 $aFARIA, L. C. B.
245 $aIs a genome a codeword of an error-correcting code?$h[electronic resource]
260 $c2012
520 $aSince a genome is a discrete sequence, the elements of which belong to a set of four letters, the question as to whether or not there is an error-correcting code underlying DNA sequences is unavoidable. The most common approach to answering this question is to propose a methodology to verify the existence of such a code. However, none of the methodologies proposed so far, although quite clever, has achieved that goal. In a recent work, we showed that DNA sequences can be identified as codewords in a class of cyclic error-correcting codes known as Hamming codes. In this paper, we show that a complete intron-exon gene, and even a plasmid genome, can be identified as a Hamming code codeword as well. Although this does not constitute a definitive proof that there is an error-correcting code underlying DNA sequences, it is the first evidence in this direction.
650 $aGenome
650 $aNucleotide sequences
650 $aBiologia
653 $aBiology
653 $aSequência de DNA
700 1 $aROCHA, A. S. L.
700 1 $aKLEINSCHMIDT, J. H.
700 1 $aSILVA-FILHO, M. C.
700 1 $aBIM, E.
700 1 $aHERAI, R. H.
700 1 $aYAMAGISHI, M. E. B.
700 1 $aPALAZZO JÚNIOR, R.
773 $tPLoS ONE, San Francisco$gv. 7, n. 5, e105396, May 2012.
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Registro original: |
Embrapa Agricultura Digital (CNPTIA) |
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Registro Completo
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Biblioteca(s): |
Embrapa Algodão. |
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Data corrente: |
17/03/2014 |
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Data da última atualização: |
19/03/2014 |
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Autoria: |
ALMEIDA, C. M. A.; DONATO, V. M. T. S.; AMARAL, D. O. J.; LIMA, G. S. A.; BRITO, G. G. de; LIMA, M. M. de A.; CORREIA, M. T. S.; SILVA, M. V. |
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Afiliação: |
Clebia M A Almeida, UFPE; Virginia M T S Donato, UFPE; Daniel O J Amaral, UFPE; Gaus S A Lima, UNIVERSIDADE FEDERAL DE ALAGOAS.; GIOVANI GREIGH DE BRITO, CNPA; MARLEIDE MAGALHAES DE ANDRADE LIMA, CNPA; Maria Tereza S Correia, UFPE; Márcia V Silva, UFPE. |
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Título: |
Differential gene expression in sugarcane induced by salicylic acid and under water deficit conditions. |
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Ano de publicação: |
2013 |
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Fonte/Imprenta: |
Agricultural Science Research Journal, v. 3, n.1, p.38-44, Jan. 2013. |
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Idioma: |
Português |
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Palavras-Chave: |
CDNA LIBRARY; SACCHARUM SP. |
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Thesaurus NAL: |
abiotic stress; drought; suppression subtractive hybridization. |
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Categoria do assunto: |
-- |
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URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/item/99372/1/sugarcane.pdf
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Marc: |
LEADER 00802naa a2200253 a 4500
001 1982544
005 2014-03-19
008 2013 bl uuuu u00u1 u #d
100 1 $aALMEIDA, C. M. A.
245 $aDifferential gene expression in sugarcane induced by salicylic acid and under water deficit conditions.$h[electronic resource]
260 $c2013
650 $aabiotic stress
650 $adrought
650 $asuppression subtractive hybridization
653 $aCDNA LIBRARY
653 $aSACCHARUM SP
700 1 $aDONATO, V. M. T. S.
700 1 $aAMARAL, D. O. J.
700 1 $aLIMA, G. S. A.
700 1 $aBRITO, G. G. de
700 1 $aLIMA, M. M. de A.
700 1 $aCORREIA, M. T. S.
700 1 $aSILVA, M. V.
773 $tAgricultural Science Research Journal$gv. 3, n.1, p.38-44, Jan. 2013.
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Registro original: |
Embrapa Algodão (CNPA) |
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