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Registro Completo |
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Biblioteca(s): |
Embrapa Agricultura Digital; Embrapa Gado de Leite; Embrapa Pecuária Sudeste. |
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Data corrente: |
26/05/2017 |
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Data da última atualização: |
21/05/2019 |
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Tipo da produção científica: |
Artigo em Periódico Indexado |
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Autoria: |
BUZANSKAS, M. E.; VENTURA, R. V.; CHUD, T. C. S.; BERNARDES, P. A.; SANTOS, D. J. de A.; REGITANO, L. C. de A.; ALENCAR, M. M. de; MUDADU, M. de A.; ZANELLA, R.; SILVA, M. V. G. B.; LI, C.; SCHENKE, F. S.; MUNARI, D. P. |
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Afiliação: |
Marcos Eli Buzanskas, Unesp; Ricardo Vieira Ventura, USP; Tatiane Cristina Seleguim Chud, Unesp; Priscila Arrigucci Bernardes, Unesp; Daniel Jordan de Abreu Santos, Unesp; LUCIANA CORREIA DE ALMEIDA REGITANO, CPPSE; MAURICIO MELLO DE ALENCAR, CPPSE; MAURICIO DE ALVARENGA MUDADU, CNPTIA; Ricardo Zanella, UPF; MARCOS VINICIUS GUALBERTO B SILVA, CNPGL; Changxi Li, University of Alberta; Flavio Schramm Schenke, University of Guelph; Danísio Prado Munari, Unesp. |
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Título: |
Study on the introgression of beef breeds in canchim cattle using single nucleotide polymorphism markers. |
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Ano de publicação: |
2017 |
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Fonte/Imprenta: |
Plos one, v. 12, p. 1-16, 2017. |
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DOI: |
https://doi.org/10.1371/journal.pone.0171660 |
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Idioma: |
Inglês |
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Conteúdo: |
The aim of this study was to evaluate the level of introgression of breeds in the Canchim (CA: 62.5% Charolais?37.5% Zebu) and MA genetic group (MA: 65.6% Charolais?34.4% Zebu) cattle using genomic information on Charolais (CH), Nelore (NE), and Indubrasil (IB) breeds. The number of animals used was 395 (CA and MA), 763 (NE), 338 (CH), and 37 (IB). The Bovine50SNP BeadChip from Illumina panel was used to estimate the levels of introgression of breeds considering the Maximum likelihood, Bayesian, and Single Regression method. After genotype quality control, 32,308 SNPs were considered in the analysis. Furthermore, three thresholds to prune out SNPs in linkage disequilibrium higher than 0.10, 0.05, and 0.01 were considered, resulting in 15,286, 7,652, and 1,582 SNPs, respectively. For k = 2, the proportion of taurine and indicine varied from the expected proportion based on pedigree for all methods studied. For k = 3, the Regression method was able to differentiate the animals in three main clusters assigned to each purebred breed, showing more reasonable according to its biological viewpoint. Analyzing the data considering k = 2 seems to be more appropriate for Canchim-MA animals due to its biological interpretation. The usage of 32,308 SNPs in the analyses resulted in similar findings between the estimated and expected breed proportions. Using the Regression approach, a contribution of Indubrasil was observed in Canchim-MA when k = 3 was considered. Genetic parameter estimation could account for this breed composition information as a source of variation in order to improve the accuracy of genetic models. Our findings may help assemble appropriate reference populations for genomic prediction for Canchim-MA in order to improve prediction accuracy. Using the information on the level of introgression in each individual could also be useful in breeding or crossing design to improve individual heterosis in crossbred cattle. MenosThe aim of this study was to evaluate the level of introgression of breeds in the Canchim (CA: 62.5% Charolais?37.5% Zebu) and MA genetic group (MA: 65.6% Charolais?34.4% Zebu) cattle using genomic information on Charolais (CH), Nelore (NE), and Indubrasil (IB) breeds. The number of animals used was 395 (CA and MA), 763 (NE), 338 (CH), and 37 (IB). The Bovine50SNP BeadChip from Illumina panel was used to estimate the levels of introgression of breeds considering the Maximum likelihood, Bayesian, and Single Regression method. After genotype quality control, 32,308 SNPs were considered in the analysis. Furthermore, three thresholds to prune out SNPs in linkage disequilibrium higher than 0.10, 0.05, and 0.01 were considered, resulting in 15,286, 7,652, and 1,582 SNPs, respectively. For k = 2, the proportion of taurine and indicine varied from the expected proportion based on pedigree for all methods studied. For k = 3, the Regression method was able to differentiate the animals in three main clusters assigned to each purebred breed, showing more reasonable according to its biological viewpoint. Analyzing the data considering k = 2 seems to be more appropriate for Canchim-MA animals due to its biological interpretation. The usage of 32,308 SNPs in the analyses resulted in similar findings between the estimated and expected breed proportions. Using the Regression approach, a contribution of Indubrasil was observed in Canchim-MA when k = 3 was considered. Genetic parameter estimat... Mostrar Tudo |
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Palavras-Chave: |
Canchim cattle; Polimorfismo de nucleotídeo único; Raças de gado. |
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Thesagro: |
Gado canchim; Gado de corte; Gado Indubrasil; Gado nelore. |
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Thesaurus Nal: |
beef cattle; Cattle breeds; Charolais; Composite breeds; polymorphism; Single nucleotide polymorphism. |
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Categoria do assunto: |
G Melhoramento Genético |
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URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/item/160251/1/journal.pone.0171660.pdf
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Marc: |
LEADER 03213naa a2200433 a 4500
001 2070093
005 2019-05-21
008 2017 bl uuuu u00u1 u #d
024 7 $ahttps://doi.org/10.1371/journal.pone.0171660$2DOI
100 1 $aBUZANSKAS, M. E.
245 $aStudy on the introgression of beef breeds in canchim cattle using single nucleotide polymorphism markers.$h[electronic resource]
260 $c2017
520 $aThe aim of this study was to evaluate the level of introgression of breeds in the Canchim (CA: 62.5% Charolais?37.5% Zebu) and MA genetic group (MA: 65.6% Charolais?34.4% Zebu) cattle using genomic information on Charolais (CH), Nelore (NE), and Indubrasil (IB) breeds. The number of animals used was 395 (CA and MA), 763 (NE), 338 (CH), and 37 (IB). The Bovine50SNP BeadChip from Illumina panel was used to estimate the levels of introgression of breeds considering the Maximum likelihood, Bayesian, and Single Regression method. After genotype quality control, 32,308 SNPs were considered in the analysis. Furthermore, three thresholds to prune out SNPs in linkage disequilibrium higher than 0.10, 0.05, and 0.01 were considered, resulting in 15,286, 7,652, and 1,582 SNPs, respectively. For k = 2, the proportion of taurine and indicine varied from the expected proportion based on pedigree for all methods studied. For k = 3, the Regression method was able to differentiate the animals in three main clusters assigned to each purebred breed, showing more reasonable according to its biological viewpoint. Analyzing the data considering k = 2 seems to be more appropriate for Canchim-MA animals due to its biological interpretation. The usage of 32,308 SNPs in the analyses resulted in similar findings between the estimated and expected breed proportions. Using the Regression approach, a contribution of Indubrasil was observed in Canchim-MA when k = 3 was considered. Genetic parameter estimation could account for this breed composition information as a source of variation in order to improve the accuracy of genetic models. Our findings may help assemble appropriate reference populations for genomic prediction for Canchim-MA in order to improve prediction accuracy. Using the information on the level of introgression in each individual could also be useful in breeding or crossing design to improve individual heterosis in crossbred cattle.
650 $abeef cattle
650 $aCattle breeds
650 $aCharolais
650 $aComposite breeds
650 $apolymorphism
650 $aSingle nucleotide polymorphism
650 $aGado canchim
650 $aGado de corte
650 $aGado Indubrasil
650 $aGado nelore
653 $aCanchim cattle
653 $aPolimorfismo de nucleotídeo único
653 $aRaças de gado
700 1 $aVENTURA, R. V.
700 1 $aCHUD, T. C. S.
700 1 $aBERNARDES, P. A.
700 1 $aSANTOS, D. J. de A.
700 1 $aREGITANO, L. C. de A.
700 1 $aALENCAR, M. M. de
700 1 $aMUDADU, M. de A.
700 1 $aZANELLA, R.
700 1 $aSILVA, M. V. G. B.
700 1 $aLI, C.
700 1 $aSCHENKE, F. S.
700 1 $aMUNARI, D. P.
773 $tPlos one$gv. 12, p. 1-16, 2017.
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Registro original: |
Embrapa Pecuária Sudeste (CPPSE) |
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| Registros recuperados : 11 | |
| 2. |  | ROSA, J. O.; VARGAS, G.; BERNARDES, P. A.; FIGUEIREDO, E. A. P. de; LEDUR, M. C.; MUNARI, D. P. Avaliação da endogamia de uma população de aves de postura White Leghorn. In: SIMPÓSIO BRASILEIRO DE MELHORAMENTO ANIMAL, 10., 2013, Uberaba. Anais... Belo Horizonte: SBMA, 2013.| Tipo: Artigo em Anais de Congresso |
| Biblioteca(s): Embrapa Suínos e Aves. |
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| 3. | | LEONI, G.; BUZANSKAS, M. E.; MARCONDES, C. R.; REGITANO, L. C. de A.; MUNARI, D. P.; BERNARDES, P. A. Imputação utilizando painéis personalizados em bovinos da raça Canchim. In: SIMPÓSIO BRASILEIRO DE MELHORAMENTO ANIMAL, 15., 2023, Jataí. O reinado dos fenótipos: novos desafios. Anais.... Jataí: SBMA, 2023. p. 120-122.| Tipo: Artigo em Anais de Congresso |
| Biblioteca(s): Embrapa Pecuária Sudeste. |
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| 6. | | CARVAJAL, A. B.; MARCHESI, J. A. P.; BERNARDES, P. A.; CANTAO, M. E.; PEIXOTO, J. de O.; FIGUEIREDO, E. A. P. de; LEDUR, M. C.; MUNARI, D. P. Estrutura populacional de uma linha paterna de frangos de corte usando análise de registros de pedigree. In: CURSO DE INVERNO DE GENÉTICA, 7., FACAV-UNESP, 2016. Publicado: Ciência & Tecnologia: Fatec-JB, Jaboticabal, v. 8, n. 1, 2016. Número especial 2.| Tipo: Artigo em Anais de Congresso |
| Biblioteca(s): Embrapa Suínos e Aves. |
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| 7. | | NASCIMENTO, G. B.; SAVEGNAGO, R. P.; URBINATI, I.; BERNARDES, P. A.; FERRAUDO, A. S.; SCHMIDT, G. S.; LEDUR, M. C.; MUNARI, D. P. The use of artificial neural networks to explore the relationship between breeding values of egg production with other phenotypic measurements in hens of a white leghorn population. In: CONGRESSO BRASILEIRO DE GENÉTICA, 58., 2012, Foz do Iguaçu. Resumos... Foz do Iguaçú: SBG, 2012. p. 38.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Suínos e Aves. |
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| 8. | | MARCIANO, L. E. A.; MAIA, R. de O. G.; SANTOS; DUARTE, I. N. H.; BERNARDES, P. A.; CHUD, T. C. S.; REGITANO, L. C. de A.; BUZANSKAS, M. E. Estratégias de imputação em gado Canchim utilizando população de referência da raça Nelore. In: REUNIÃO ANUAL DA SOCIEDADE BRASILEIRA DE ZOOTECNIA, 55.; CONGRESSO BRASILEIRO DE ZOOTECNIA, 28., 2018, Goiânia. Construindo saberes, formando pessoas e transformando a produção animal: anais eletrônicos. Goiânia: Sociedade Brasileira de Zootecnia, 2018.| Tipo: Artigo em Anais de Congresso |
| Biblioteca(s): Embrapa Pecuária Sudeste. |
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| 9. | | DUARTE, I. N. H.; MAIA, R. de O. G.; MARCIANO, L E. A.; SANTOS, M. S.; BERNARDES, P. A.; BERRY, D.; REGITANO, L. C. de A.; BUZANSKAS, M. E. Contribuição das raças charolês e nelore na acurácia de imputação de animais Canchim. In: CONGRESSO NORDESTINO DE PRODUÇÃO ANIMAL, 13., 2018, João Pessoa, PE. Anais... João Pessoa, PE: SNPA, 2018. João Pessoa de 15 a 17 de novembro de 2018.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Pecuária Sudeste. |
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| 10. | | BUZANSKAS, M. E.; VENTURA, R. V.; CHUD, T. C. S.; SANTOS, D. J. A.; BERNARDES, P. A.; SILVA, T. B. R.; MUDADU, M. A.; REGITANO, L. C. A.; SILVA, M. V. G. B.; LI, C.; SCHENKEL, F. S.; ALENCAR, M. M.; MUNARI, D. P. Admixture analysis in Brazillian synthetic cattle. In: ADSA ASAS JOINT ANNUAL MEETING, 2015, Orlando. Proceedings... Orlando: ADSA: ASAS, 2015.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Gado de Leite. |
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| 11. | | BUZANSKAS, M. E.; VENTURA, R. V.; CHUD, T. C. S.; BERNARDES, P. A.; SANTOS, D. J. de A.; REGITANO, L. C. de A.; ALENCAR, M. M. de; MUDADU, M. de A.; ZANELLA, R.; SILVA, M. V. G. B.; LI, C.; SCHENKE, F. S.; MUNARI, D. P. Study on the introgression of beef breeds in canchim cattle using single nucleotide polymorphism markers. Plos one, v. 12, p. 1-16, 2017.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
| Biblioteca(s): Embrapa Agricultura Digital; Embrapa Gado de Leite; Embrapa Pecuária Sudeste. |
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| Registros recuperados : 11 | |
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| Nenhum registro encontrado para a expressão de busca informada. |
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